Commit Graph

758 Commits

Author SHA1 Message Date
Martin Diehl de96e99bca corrected determination of restartRead from commandline (now done by FEsolving instead of DAMASK_spectral_interface)
recompiled fftw libraries with --enable-shared to make them work with f2py
added draft for compilation test of spectral solver
2011-11-07 18:25:10 +00:00
Christoph Kords ba63d3231f fixed string include 2011-11-04 10:27:41 +00:00
Philip Eisenlohr 9e3d7d7d6c made $DAMASK_ROOT definition optional 2011-11-03 13:51:54 +00:00
Philip Eisenlohr b9647b2584 moved parts into new "lib" folder 2011-11-03 13:21:11 +00:00
Philip Eisenlohr aba7937845 now uses msc_tools method to figure out Mentat path 2011-11-03 13:16:00 +00:00
Philip Eisenlohr 4e8f36a133 remove $ID$ from first line (I am wondering how this could work...) 2011-11-02 18:49:53 +00:00
Martin Diehl 7642509a47 first working draft of automated code testing, run_tests.py assumes DAMASK is located under ~/DAMASK/ 2011-10-24 16:24:15 +00:00
Claudio Zambaldi e7a60988a1 modified exit number extraction 2011-10-24 13:02:08 +00:00
Claudio Zambaldi 93b2160c2f extract exit number from MSC out-file. Other MSC utility functions can also go into MSC_TOOLS class. 2011-10-24 12:59:46 +00:00
Philip Eisenlohr 414bacb096 deleted unused vars. changed linking library info/path 2011-10-20 12:47:57 +00:00
Philip Eisenlohr ed08dfc2be added option to select between cell-centered (as before) or vertex-centered data 2011-10-20 12:29:59 +00:00
Philip Eisenlohr c78227cec1 added option to skip data points along x,y,z in case they are periodic images. relevant for vertex-centered data for which outer surface data is doubled, i.e. data(0,0,0) == data(Nx,Ny,Nz) 2011-10-20 12:28:39 +00:00
Philip Eisenlohr 3a0911ca89 added option to output RGB palette on terminal
number of colors is now variable (default 32)
warning issued if MSC path not valid

new "redblue" sym colormap
2011-10-20 11:59:15 +00:00
Philip Eisenlohr c7c541f393 corrected typos and such 2011-09-13 15:57:58 +00:00
Philip Eisenlohr b412239d9f reflects new output format of DAMASK_spectral to find
*** Loadcase...
lines.
2011-09-05 13:39:44 +00:00
Philip Eisenlohr f3c2547fba name change to better reflect what happens: comparison between local deformation field and a (necessarily compatbile) geometry reconstructed from the whole deformation field. 2011-08-26 07:17:35 +00:00
Martin Diehl eb0ce3992b debugging of addDebugInformation (now working, but not tested in detail)
Added Id to postprocessingMath
2011-08-25 18:18:38 +00:00
Philip Eisenlohr 7aba05ed9f reworked to match former script layouts and logics. (not yet tested, use at your own risk) 2011-08-25 17:55:36 +00:00
Martin Diehl 282d2d7b97 corrected wrong Id tag 2011-08-25 16:47:12 +00:00
Martin Diehl bbee6c4658 forget to check in addDebugInformation 2011-08-25 16:44:36 +00:00
Martin Diehl a5f176cf18 put divergence calculation using FDM to postprocessingMath, added divergence calculation using differentation in Fourier space to postprocessingMath
added functions to calculate the shape and volume mismatch of compatible and non-compatible geometry reconstruction to postprocessingMath. They can be accessed using addDebugInformation
2011-08-25 15:31:05 +00:00
Martin Diehl cc3bc4a216 made handling of unknown dimension (i.e. resolution ==1) the same as for preprocessing (last commit) 2011-08-25 15:28:33 +00:00
Philip Eisenlohr 2dd8a353bb now also works for single stepped loadcases, too 2011-08-19 10:03:42 +00:00
Martin Diehl 878ea443d6 added options to control written output (mesh(default), box, points) and to control reconstruction. --undeformed does not calculate average deformation of ve, --scaling controls the scaling of the fluctuation. Default is 1.0, with 0.0 no fluctuations are shown 2011-08-19 07:33:22 +00:00
Philip Eisenlohr def056f30f added $Id$ escaping 2011-08-18 08:00:19 +00:00
Philip Eisenlohr e851c934ee interrogate output from DAMASK_spectral for "error divergence:" evolution.
results in an ASCII datafile containing the increment counter with corresponding divergence value. the evolution within an increment i is stretched between i and i+1 (and likely jumps then for the next increment i+1 at the value i+1)
2011-08-14 10:44:15 +00:00
Philip Eisenlohr a58158fc7c bug fix related to hash key error when requesting --increments range 2011-07-25 12:53:54 +00:00
Onur Guevenc 8cb8637d41 fixed running with default --range & using --separation options. 2011-07-22 11:59:03 +00:00
Onur Guevenc 105a09f3df only consider increments actually present in (spectral) result
added switch to change from range of positions to range of increments

polished help output
2011-07-21 15:45:41 +00:00
Christoph Kords cb96559d99 mappings should rather be called "sumabs" and "avgabs" than "abssum" and "absavg" 2011-07-15 11:27:47 +00:00
Christoph Kords 63451f6edf added "absavg" (=average of the absolute values) to the predefined mappings 2011-07-15 08:07:33 +00:00
Philip Eisenlohr b252b467e8 moved useful ASCII post processing scripts from my Code repository into the DAMASK post-proc. 2011-06-21 16:25:48 +00:00
Onur Guevenc daa45306f2 fixed a nasty bug in reading the header of spectral files
file type is guessed from extension

script tries to gracefully continue when data is missing but not crucial

ASCII file splitting now has correct increment (not position) in its name: poop_inc123.txt refers to true increment 123 not to position 123 in the result file anymore...
2011-06-21 12:38:58 +00:00
Philip Eisenlohr b6b02f6cf9 now reports over all loadcases present in the output file, not just a selected one... 2011-06-15 18:14:05 +00:00
Philip Eisenlohr dd11ef3072 added capability to deal with (Marc, spectral) output files that have less than every increment stored. 2011-06-15 17:49:59 +00:00
Onur Guevenc d52fb1666e "step" header is modified to "inc" to be consistent with postResults outputs. 2011-06-09 12:39:08 +00:00
Philip Eisenlohr a72a97f0ba added nodalScalar capability.
--ns 'elements' reports the nodal connectivity (list of elements touching a node)

--prefix allows to prefix the output filename
2011-06-08 16:54:46 +00:00
Christoph Kords 5740e13485 added new predefined mapping "abssum", which returns the sum of all absolute values 2011-06-08 14:07:15 +00:00
Christoph Kords 2cbfb69235 user defined mapping didn't work because of misspelled variable in "mapIncremental" 2011-06-08 13:56:21 +00:00
Philip Eisenlohr 4a2078e965 produces two-column data of step | iteration at which convergence was reached (or aborted). Source file is the redirected STDOUT of DAMASK_spectral 2011-05-31 12:31:35 +00:00
Philip Eisenlohr 5e6de13962 removed useless grain selection option (--grain)
escaped MPIE\n.... in $ID$

fixed problem when writing output files into subdirectories
2011-05-26 09:44:10 +00:00
Philip Eisenlohr 96a4d83b9b fixed bug in user mapping function.
corrected examples and added incremental mapping explanation to usage hint.
2011-05-26 09:41:53 +00:00
Nan Jia 3ae8b0f732 dropped grain index from output header (did not work anyhow)
introduced string escape for the likes of MPIE\n.jia to prevent newline literal
2011-05-24 17:23:22 +00:00
Nan Jia 73b1dbc5f7 corrected printing bug 2011-05-23 15:11:01 +00:00
Philip Eisenlohr 6daa8b710b shortened output header to contain only one description line that includes the command line switches passed to postResults 2011-05-23 07:13:28 +00:00
Philip Eisenlohr 2a8dc1bff1 Fixed a bug introduced in the last revision. Datatype keywords (SCALARS, VECTORS, ...) were not written in plural form into VTK file, thus had not been recognized by ParaView. 2011-05-22 14:01:18 +00:00
Philip Eisenlohr 8879e03a60 better reporting and fixed a bug when requesting non-existing data 2011-05-21 21:43:40 +00:00
Philip Eisenlohr 25e3c4baf8 nicer STDOUTput and can now properly deal with resolutions of 1 2011-05-13 16:53:27 +00:00
Philip Eisenlohr 4658190951 now reports command line switches used in generating output files 2011-05-12 09:53:44 +00:00
Philip Eisenlohr 25bf6bf7dd reports command line switches used in generating output files 2011-05-12 08:25:34 +00:00
Christoph Kords 1928fa816c output now contains both node and ip number
relation between node and ip numbering is given in new function ipIDs
2011-05-06 10:00:27 +00:00
Christoph Kords 56b2b3e572 * quick fix in order to make it work for elements of type 57 (quadratic with reduced integration)
* length for results of type "elemental tensor" is exactly 7
2011-05-05 09:16:29 +00:00
Philip Eisenlohr 2fa4a344b9 added sloppy option to circumvent increment range check. that is useful to reach the last inc in former FFT sim results, which have a wrong inc count in their header 2011-05-02 16:10:18 +00:00
Philip Eisenlohr 97185fb30b removed debug printing... 2011-04-14 14:03:06 +00:00
Philip Eisenlohr f598e3b6ed corrected mixup of Fortran (1,2,3,...) indexing to Python (0,1,2,...) style.
fixed erroneous array indexing in neighborhood calculation.
2011-04-14 10:11:23 +00:00
Philip Eisenlohr 2a04bfdbba fixed error concerning mixed-up index starts (0 vs 1)
"illegal" mapping functions are not checked anymore, i.e., if you want to average Euler angles you get it..!

sorting is now "natural", i.e., separating or sorting for "x,y,z" returns x varying fast and z slow. "--sort" overrides "--separate" in terms of output sorting (as expected...)
2011-04-13 16:31:44 +00:00
Philip Eisenlohr 482be626e0 major recoding.
now with tiny memory footprint and better guessing of remaining time.
2011-04-12 17:46:35 +00:00
Nan Jia e4cbdc5743 now also works for 2D quadratic triangular element type 125 2011-04-06 13:11:25 +00:00
Philip Eisenlohr a989aa979e corrected increment offsetting for spectral file type. should now be consistent with new (0+N) mpie_spectral output scheme 2011-04-06 10:00:19 +00:00
Franz Roters 8467c91dab moved setup scripts back to subdirs where they are needed 2011-03-22 15:42:53 +00:00
Philip Eisenlohr 6ac2b4cf88 deleted useless storage of data resulting in partial speed-up.
large datasets (>1 mio elements) cannot be processed at the moment---investigation required, why each element eats about 20kB of memory?
2011-03-11 16:32:01 +00:00
Philip Eisenlohr 1f0569230b new installation/setup dir to hold all top-level make_*-scripts 2011-03-11 09:20:37 +00:00
Philip Eisenlohr 621c1198a4 Marc/Mentat related things are only executed for filetype marc. this has been too lax before, causing trouble.
filetype is now lowercased right from the start, keeping effort low downstream...
2011-03-10 09:45:57 +00:00
Christoph Kords 6b63d488cb need py_post, not py_mentat 2011-02-28 10:00:08 +00:00
Philip Eisenlohr 9312aed545 set executable bit 2011-02-27 21:51:56 +00:00
Martin Diehl 8cae4d609a some polishing for single precision version.
Now only prec and mpie_spectral are needed in different versions
2011-02-25 12:41:46 +00:00
Martin Diehl cd5407b08b removed all math functions only for double precision by the more flexible counterpart, e.g. "dsqrt --> sqrt", "dsin --> sin". Should not cause any harm, as long as "implicit none" is used.
Now it is possible to compile a single precision spectral solver/crystal plasticity by replacing mesh.f90 and prec.f90 with mesh_single.f90 and prec_single.f90.
For the spectral method, just call "make precision=single" instead of "make". Use "make clean" evertime you switch precision
2011-02-25 09:25:53 +00:00
Martin Diehl f525c02ded added single precision libraries for FFTW
First try of implement single precision crystal plasticity, not working yet.
polishing text about geometry construction.
polishing postResults, still having problems concerning machines without MSC installation
2011-02-24 18:39:57 +00:00
Martin Diehl 3c944e79fa did some things Philip told me to do (postResults for spectral files is now working without MSC installation) 2011-02-22 16:18:47 +00:00
Philip Eisenlohr 003b0def46 fixed a stupido error 2011-02-22 16:06:24 +00:00
Martin Diehl 333445be8b changed meshing routine from python to fortran (f2py) 2011-02-22 16:00:22 +00:00
Philip Eisenlohr 2dc3b35725 no need anymore for msc python interface when dealing with spectralOut files 2011-02-22 15:57:27 +00:00
Martin Diehl 8a5e28d5a6 now using fft reconstruction in 3Dvisualize, linear python code for reconstruction is removed 2011-02-21 21:03:21 +00:00
Martin Diehl c399a06c97 tried to implement an inverse reconstruction, meaning to calculate an average deformation gradient from the 8 cornes of a node in reference and current configuration. Not working yet.
polishing, mainly in fft reconstruction.
added fftw library file and fortran file for type specification
added folder references with literature for visualization/geometry reconstruction
2011-02-21 16:30:18 +00:00
Philip Eisenlohr 34336bc659 fixed bug when no argument was supplied 2011-02-18 09:02:29 +00:00
Martin Diehl 438bf95105 added ft-based reconstruction of deformed configuration to postprocessingMath.f90 and postprocessingMath.pyf
also added function to calculate average of tensor
some polishing in mpie_spectral.f90, added sanity check to see im resolution is power of 2
2011-02-14 17:21:31 +00:00
Martin Diehl 3d7fad6ba9 mpie_spectral.f90: changed fourier transormation, now using the advanced interface to do the tranformation both ways with just one call. now also using the same variable for pk-stress in both domains and the change of deformation gradient in both domains.
postprocessing: renamed name of python/f2py modul from "reconstruct" to "postprocessingMath", added some numerical operations to use for postprocessing.
2011-02-09 17:47:28 +00:00
Philip Eisenlohr 65ae7de42b fixed bug for missing file name 2011-02-09 09:18:21 +00:00
Martin Diehl 7a7ca1aab7 mpie_spectral and mpie_interface: changed workingdir from pathToLoadFile to pathToGeomFile
mpie_spectral and numerics: added switch to prevent pre calculation of gamma_hat. slower, but saves memory
3Dvisualize: started to add support for gmsh (not fully working yet)
reconstruct: new version of f2py/Fortran subroutines for output of results from spectral method
2011-02-07 14:35:42 +00:00
Philip Eisenlohr 6511b4b5a2 added possibility to select predefined colorscheme from config file 2011-02-04 09:36:26 +00:00
Philip Eisenlohr 05350d573e fixed a bug in new --sort
--separation option now keeps data point location as intact as meaningful after applying averaging
2011-02-01 18:32:20 +00:00
Martin Diehl 669893b397 binary \n will not longer cause problems 2011-02-01 18:25:40 +00:00
Philip Eisenlohr 14d3d0ba99 less output but can now handle 'n/a' in data files without crashing 2011-02-01 16:43:00 +00:00
Philip Eisenlohr ebf201e89c sorry---wrong file version uploaded before.
now correct: added "--sort" option extending the existing sorting according due to "--separation". This is, for instance, useful for separating /elementhomogeneous/ results by element and later listing the results along x,y,z...

slight improvement in file-error reporting
2011-02-01 13:24:19 +00:00
Philip Eisenlohr 958c51fc26 added "--sort" option extending the existing sorting according due to "--separation". This is, for instance, useful for separating /elementhomogeneous/ results by element and later listing the results along x,y,z... 2011-02-01 13:13:05 +00:00
Philip Eisenlohr d6edb64929 produce VTK visualizations from postResults files 2011-02-01 10:48:44 +00:00
Martin Diehl fec2c14a4e removed hard-coded tolerances from mpie_spectral and put them to numerics/IO
removed storage of full cauchy stres field from mpie_spectral.f90, only average is stored now
added cauchy stress and von mises equivalent calculation to spectral post.
2011-01-31 17:07:42 +00:00
Martin Diehl 17b8205e3f reconstruction of geometry is now working. It is directly implemented in python (file spectral_post.py).
reconstruction in fortran is not working (file reconstruct.f90) due to some problems with f2py
2011-01-26 12:56:52 +00:00
Christoph Kords 581955f68d parsePostFile screwed up the position of outputs for a grain number larger than 1 2011-01-14 13:15:19 +00:00
Martin Diehl a662a28a97 added support for spectral method result files 2011-01-12 16:55:56 +00:00
Martin Diehl 322cbd2597 changed tools for voronoi tessellation to match new specification (file extension and resolution). Also renamed the files, because the space characters cause trouble
improved reconstruct.f90 and spectral_post.py, both files work now under linux

added make_reconstruct.py, small shell script for using f2py
2011-01-07 14:37:05 +00:00
Martin Diehl 20c00288b8 ---had some problems with svn, hope everything is ok now---
added new tools to generate colormaps for paraview and gmsh, written in python
removed old fortran colormap generator.

removed test.py (not longer needed) and the python module reconstruct.pyd (not running under linux)
2011-01-05 14:53:31 +00:00
Martin Diehl 3b0eeb9956 added files for geometry reconstruction from given deformation gradient.
reconstruct.f90 is a fortran source file with comments to use with f2py
reconstruct.pyd is the compiled python module

test.py is a test file to check if the reconstruction works (unfortunately i does not at the moment, probably because there are type conflicts between fortran and python)
2010-12-22 10:59:54 +00:00
Martin Diehl 8d6ddcf28b restructured (or structured at all) reading of header, first try of reading in deformation gradient 2010-12-09 15:53:52 +00:00
Martin Diehl ac676623ca reading of header is now working 2010-12-03 14:57:28 +00:00
Martin Diehl 2f47d4b09b added conversion of 'resolution' in result file to integer array 2010-12-02 14:53:17 +00:00
Martin Diehl ab82dbc99c continued working on reading header of output file 2010-11-30 14:26:30 +00:00
Martin Diehl 9d32bc7ae6 added output of complete mesh to voronoi fast.f90
first version of post processing for spectral method: spectral_post.py
2010-11-29 10:08:53 +00:00
Philip Eisenlohr b2cc34349f corrected mistake in nodeCoordinate assignment, bug-fix for option " --filter 'x,y,z' " 2010-11-12 08:56:04 +00:00
Philip Eisenlohr be265aef37 slight improvement of remaining time estimate... 2010-11-02 16:55:56 +00:00
Philip Eisenlohr 796bffee2e 1) speed-up of elementTensor output
2) added estimate of remaining time
2010-11-02 15:45:23 +00:00
Martin Diehl e80e055c75 added three small programs useful for spectral method (fortran sourececode)
voronoi fast.f90 and voronoi small memory.f90 are two variants to do a voronoi tessellation and write the result to a mesh file that can be interpreted by mpie_spectral.f90. Difference is the memory management resulting in one faster and one memory saving version. voronoi fast.f90 has also the ability to write out a file for Ricardo Lebensohns spectral code.
colormap.f90 is a simple code that can be used to generate colormaps for gmsh.
2010-10-31 16:06:10 +00:00
Philip Eisenlohr 487466dd88 scripts are now aware of symbolic links to themselves... 2010-10-26 16:26:55 +00:00
Philip Eisenlohr d8a4cd1739 added optional argument --baseindex to specify what colorset should be influenced. identify colors, for instance, start at idx 214... 2010-09-13 07:31:27 +00:00
Alankar Alankar 006dce7d8a printing euler angles (and defgrads and orientations) for individual ips now works 2010-09-08 11:55:57 +00:00
Philip Eisenlohr 4a31b175da 1) introduced default colors
2) complaints are more verbose
2010-09-06 16:51:11 +00:00
Philip Eisenlohr 3b671faae7 added some flexibility (and bug-fixing) to the pre/post processing. the file 'MSCpath' contains the LOCAL path to the MSC installation (/msc in our case) 2010-08-17 18:21:22 +00:00
Philip Eisenlohr 94efd57663 started to put Marc/Mentat related scripts to corresponding post/pre processing folders. We should move development from my Code folder to here (sorry, lost history then...) 2010-08-16 20:47:27 +00:00