7a4e9856c5
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-14 18:47:54 +01:00
fdd4ab483e
core.so is not part of the repo
2016-03-14 05:51:52 +01:00
2dbdf9a72f
all symbols need to be representable in unicode
2016-03-13 18:21:25 +01:00
efde4d363d
changed encoding
2016-03-07 09:56:14 +01:00
a4bbdd5ecb
further commenting, removing not used variables and code (marc2vtk)
2016-03-04 19:06:36 +01:00
d1e8f69857
added docstrings etc
2016-03-04 17:55:11 +01:00
24391b5398
checked with prospector, adopted mainly docstrings
2016-03-04 17:53:55 +01:00
9a405ef41b
using more stable way of handling unicode printing, cleaning unicode delete from output of execute
2016-03-04 17:23:38 +01:00
75480bc677
modified background threading because using it in postResults led to an dead lock.
...
rest modifications are just style
2016-03-04 15:22:01 +01:00
4d8aad36f1
first round of libraries
2016-03-01 23:02:47 +01:00
2a3e42a906
prevent import errors (e.g. when using Abaqus, having it's own python without scipy)
2016-02-02 23:24:44 +01:00
4fa2a58a19
needed to adopt to new test env (not perfect yet, but keeps things going)
2016-01-29 19:21:04 +01:00
f2c7eea161
git compatible way of version handling for Fortran and Python
2016-01-27 16:48:27 +00:00
81a8b2c4ed
color lib for output
2016-01-05 18:17:55 +00:00
120b2b8bd2
added test for hybridIA
2015-12-22 22:17:15 +00:00
0cfe35dfe6
consistently removing leading and trailing whitespace
2015-12-22 15:59:01 +00:00
bbb00b30e8
using numpy random
2015-12-17 21:26:59 +00:00
37aa559bd4
fixed missing structure type in material.config, small changes in the other code
2015-12-15 14:30:17 +00:00
97b96f13b2
updated installation for testing
2015-12-14 21:31:47 +00:00
1f08d0fbf6
verbose option for compareTables, new option to filter (now before and after normalizing)
2015-12-11 17:23:36 +00:00
c3dc05c53a
continued work on test class and adopted some tests
2015-12-04 22:40:39 +00:00
a18a1066e2
started to rework test class. Martin probably needs to check and continue improving on this.
2015-12-03 21:52:03 +00:00
fc2d79e17b
added more animations…
2015-12-02 23:08:18 +00:00
0e76ef85c1
checking return code in util.exececute, cleaning makefile, deleted dummy docs
2015-12-02 13:21:17 +00:00
0ffcb7fdaf
cleaning
2015-12-01 16:37:20 +00:00
161e637ba6
not needed any more (at more usefull position in damask.util)
2015-11-30 16:30:35 +00:00
38c536b6b7
improved unicode handling.
...
background message is now stoppable.
background message not “jumping” (multiplying) anymore.
2015-11-20 16:15:34 +00:00
30a481f152
fixed forgotten symmetry property for average orientation.
2015-11-14 04:36:46 +00:00
2b5cb08c4d
new method “head_putGeom” translates info-array into geom-description
2015-11-14 01:48:16 +00:00
6211a9faad
symQuats-related functions can take optional argument to downselect return values.
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“getAverageOrientations” —> “average” and takes optional multiplicities of orientations in list.
2015-11-14 01:46:44 +00:00
b700721905
comment on literature
2015-11-08 11:44:46 +00:00
519484233c
can now deal with “empty” header line.
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example:
# some comment
# further stuff
1_dim 2_dim
34 33
1 22
would work with “labeled”=True and stores the first two lines as “info”.
2015-11-03 21:14:45 +00:00
4ac9ef602e
still trying to find a stable solution on all machines
2015-10-29 21:51:57 +00:00
9ea0898cd9
corrected the convention added yesterday; “proper” and ‘improper” was the wrong way around. “proper = True ” considers the bigger (2 adjacent) SST. In general, an improper rotation is implicitly assumed when projecting a pole into the (single) SST, hence this is termed “improper” now.
2015-10-23 20:16:01 +00:00
15963391aa
inSST and inversePole now can consider the secondary SST related to improper rotations. Secondary SST is immediately neighboring (positively rotated around Z).
2015-10-22 21:15:15 +00:00
31579b3f88
tolerances caused problems, introduced new funtionality based on np.allclose
2015-10-22 05:59:11 +00:00
b676ed0085
support for Marc 2010 was dropped a long time ago
2015-10-20 13:32:48 +00:00
a087eedd54
added support for Marc2014.2 (so far installed on maws14 only)
2015-10-20 13:25:59 +00:00
e72ae63873
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
2015-10-14 21:35:56 +00:00
7df8d95cd0
slightly cleaner way of dealing with disorientation calculation when axis not required to fall into SST.
2015-10-09 13:03:10 +00:00
26f8f74310
undone np.unique of columns since this would introduce the unwanted side-effect of (messily) sorting columns. user expects to get sorting as provided through command line.
2015-10-09 12:55:30 +00:00
4c46d155ec
line continuation not needed
2015-10-09 10:24:17 +00:00
61090c955d
removed code doubling
2015-10-09 05:51:58 +00:00
851d2e1b2c
prevent to load columns more than once\n @Philip: OK?
2015-10-08 17:47:00 +00:00
3b0dc374bb
now using ‘emph’ in reporting function instead of code doubling.
2015-10-07 01:07:56 +00:00
801d57af4c
fixed buggy behavior caused by assigning string instead of single-item list to readBuffer.
2015-10-07 01:03:26 +00:00
6e05082133
might be needed in multicore env
2015-10-06 18:01:31 +00:00
95a8b54996
buggy behavior when read buffer contained string (len > 0, but no pop() method)
...
@Philip: please check if intended behavior
2015-10-06 16:19:37 +00:00
e089e60202
transparently deal with one-dimensional array output
2015-09-30 18:44:54 +00:00
b2243ae3c1
small polishing
2015-09-29 22:25:57 +00:00
948aa0c544
was missing in last commit
2015-09-24 10:01:15 +00:00
2aa1073949
relocated “croak” and “report” functionality to here. needs to be altered in all scripts that still use the ASCIItable class for those…
2015-09-22 21:00:18 +00:00
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
24bd3a6eee
added “non-strict” version to find disorientation, neglecting the search for axis falling into SST (has linear instead of quadratic effort).
2015-09-16 17:07:02 +00:00
8a05584924
bg.message does not require symbol selection anymore—will pick random if nothing specified…
2015-09-15 19:02:00 +00:00
5f9fae1b75
simplified reporting using "emph"
2015-09-11 12:55:43 +00:00
31bb27268c
removed dangerous property overload (.asQuaternion() —> .quaternion)
2015-09-09 22:37:18 +00:00
7495b33b68
label_dimension dropped indices >9 due to buggy string comparison…
2015-09-08 23:12:45 +00:00
ba418a5c97
reflect recent changes in orientation class
2015-09-03 16:50:49 +00:00
eb5ad7528f
fixed bug in asEulers() output in degrees
2015-08-29 23:22:32 +00:00
6848d83d13
behavior of IO_stringPos was unsafe in some situations, also took the chance to rename the variables used in its context to a more meaningful name.
...
functions in the core module are not used, including kdTree
2015-08-28 07:38:48 +00:00
f4145dd505
add numpy header location in the setup script.
2015-08-25 18:06:36 +00:00
636eb8a087
multiple fixes and improvements.
...
1) asAngleAxis got “degrees” switch, fixed buggy output for negative angles, now angles are always non-negative.
2) removed rotateBys.
3) asEulers corrected for cases w==z or x==y.
4) added method symmetryQuats.
5) calculation of disorientation (finally) fixed, returns tuple (disorientation quaternion, index symA, index symB, boolean whether A—>B or B—>A).
2015-08-24 13:39:09 +00:00
858fe7e897
prevent closing sys.stdin or sys.stdout
2015-08-24 00:40:52 +00:00
7ceb7f7614
fixed problem when reading single label through data_readArray
2015-08-23 23:18:34 +00:00
681b7f0831
added ‘emph’ method.
...
additional background message animations.
2015-08-22 17:02:49 +00:00
6ba76c3832
introduced public line object holding currently read data line as string.
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label_append now has option to overwrite (reset=True) labels that were read originally.
data_writeArray maintains full significant digit representation as default.
2015-08-20 19:38:06 +00:00
22c52fbd32
cleaned core module
2015-08-12 18:48:09 +00:00
93dd9f5c09
bug fix regarding self.tmpext.
...
added check for access rights when overwriting original file.
2015-08-12 18:41:44 +00:00
a29240242b
standard name for numpy is np
2015-08-12 18:32:28 +00:00
64515d7aca
simplified interface:
...
name == None: read from stdin
outname == None and not readonly mode: do in-place substitution of name (with transparent file renaming upon table.close)
2015-08-12 17:42:38 +00:00
f9348398ce
removed old file, added possibility to normalise euler angels to standard range, added svn properties
2015-08-12 15:15:33 +00:00
35863e0229
fixed averageDown and made it's test running
2015-08-12 13:43:05 +00:00
36caddcc24
adjusted to new ASCII table file handling
2015-08-12 12:51:47 +00:00
3991813595
fix syntax error regarding several static method
2015-08-10 21:08:00 +00:00
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
dfe0991134
adding property alias for Orientation class to simplify syntax.
2015-08-04 20:38:06 +00:00
1ec3639cf1
use pure python implementation of orientation class as default
2015-08-02 17:49:38 +00:00
fbb7f9b11b
remove deprecated function from math.f90
2015-07-29 20:49:42 +00:00
9287d6f15f
make the interface for Symmetry class compatible with pure python version.
2015-07-29 19:39:30 +00:00
5f74f3e95e
add Cython version of orientation module to provide faster orientation calculation.
2015-07-29 19:23:06 +00:00
70606770d0
correct two typos in Quaternion class
2015-07-28 20:10:27 +00:00
bfedf037c6
add asAngleAxis() to Orientation class
2015-07-22 21:49:24 +00:00
08f4495721
changed readArray default behavior to reading always scalars when columns are referenced by number
2015-07-21 20:44:40 +00:00
c46e639a38
fixed bug preventing first line to be read when using readArray without labels.
2015-07-09 03:40:15 +00:00
5fe65bfcc3
corrected OR models and set up simple test to check them
2015-06-29 16:02:56 +00:00
50bcfe6e0d
possibility to give fixed seed to random orientation
2015-06-26 06:32:25 +00:00
6aaf074651
bug fix
2015-06-25 16:16:01 +00:00
f10dfa311a
fixed ORs
2015-06-25 12:00:08 +00:00
2d8af638b0
added optional keyword `degrees´ to q.asEulers().
...
added methods inFZ, equivalentQuaternions, and equivalentOrientations to Orientation class.
general polishing…
2015-06-21 12:05:17 +00:00
16edd1693d
now only trying to close input and output tables.
...
corrected buggy behavior in case no columns found in data_readArray.
2015-06-19 06:08:09 +00:00
83547ce29f
condensed multiple import statements into general one at module start.
2015-06-15 15:36:58 +00:00
66ce1d0b33
speed up for inversePole method. Now only performing symmetry equivalence when asked for SST.
2015-06-13 11:51:10 +00:00
0efbd4b11f
added Colormap.color(fraction) function to interpolate a color from the colormap.
...
cleaned Colormap.export by now relying on new interpolation function.
2015-06-13 11:46:32 +00:00
3d7dfba40a
syntax polishing
2015-06-13 11:43:34 +00:00
d894900c2e
added support for marc 2014:X
2015-06-11 18:19:52 +00:00
48f31f13a6
label_index now transparently searches for “1_”+label if label itself not found.
...
added label_dimension method returning the dimension of the requested object, i.e. 1, 3, or 9 as typical outcomes.
2015-06-08 05:02:11 +00:00
83d5686995
added check before trying to delete/dismiss file
2015-06-06 11:18:39 +00:00
a8d61a29d6
added newlines at end of colormap.exports
2015-06-06 11:09:15 +00:00
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
9d5ca8b631
orientation matrix shape checked in “ fromMatrix “ function
2015-05-28 21:52:05 +00:00
58eb4fc301
transparent (3,3) reshape of matrix when generating orientation.
2015-05-27 18:56:18 +00:00
c8d774f456
adopted math from Martin Baker to calculate quaternion from matrix representation.
2015-05-22 20:04:05 +00:00
4bd44f8e43
better robustness against scalar arguments and “None”.
2015-05-21 21:53:54 +00:00
99adf42f0f
improved robustness of labels_index determination.
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fixed errors in data_readArray and improved functionality. Can now cope with list of columns. reads all valid columns returning list of invalid ones. updates table.labels accordingly.
2015-05-21 00:02:32 +00:00
06f017effa
added possibility to dismiss (delete) output file upon closing an ASCIItable.
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“None” labels are disregarded in labels_index() method.
2015-05-19 21:11:49 +00:00
9f569d04c6
added “.close()” method to close input and output at the same time.
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accept header only if space present between number and “head” string.
2015-05-19 20:35:56 +00:00
5d19e55eb4
corrected access by number
2015-05-15 13:35:50 +00:00
b30eba3919
introduced (untested) OR calculation
2015-05-15 12:44:48 +00:00
fa1368204d
fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help
2015-05-14 17:07:50 +00:00
b60f868a76
renumbering asciitable when readArray for selected columns only
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test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
88e16f9344
corrected Bain model
2015-05-08 14:45:59 +00:00
90ae536204
introduction of orientation-relationship (OR) models: Kurdjumov-Sachs (KS), Nishiyama and Wassermann (NW), Greninger-Troiano(GT), Bain
2015-05-08 14:14:44 +00:00
4448187c1e
functions have been removed in previous commit
2015-05-05 14:44:31 +00:00
9694d63874
introduced option mute output to screen
2015-04-22 18:47:45 +00:00
43b665ba48
add getAverageOrientation() to Orientation class as class method.
2015-04-02 19:15:09 +00:00
32f9e7f9d8
now giving just a 'Remark' when h5py is not found
2015-04-01 14:43:34 +00:00
f5801601d8
fixed UnboundLocalError (calling variable before assignment) in “inversePole” function
2015-03-29 19:16:45 +00:00
0e7325b27d
added function — “inversePole” axis rotated according to orientation (using crystal symmetry to ensure location falls into SST)
2015-03-28 07:43:49 +00:00
151d4ff75b
fixed bug (crash) in case (meaningless) strings found after part or section key.
...
DAMASK itself is fine with it, and it can be used for commenting.
thanks to B. Bode for figuring out
2015-03-27 16:23:21 +00:00
8a30021202
cleaned up core modul
2015-03-27 14:10:18 +00:00
dd5055dc19
improved warning in case the core module is not found, corrected '/echo/' handling (had problems with key 'c/a'
2015-03-15 15:24:45 +00:00
89fa31b070
avoid troubles with /echo/ tag by considering it as a comment
2015-03-13 14:46:11 +00:00
4c1e9c559b
removed debug printing.
2015-03-06 15:13:18 +00:00
3d86c9b363
corrected conversion of quaternion to AxisAngle and Euler angles.
2015-03-06 13:54:30 +00:00
7818a8f467
Add codes about enforcing the boundary constraints for the fitting parameters, especially for the exponent term of non-quadratic yield functions.
2015-02-05 21:25:00 +00:00
84df61d4a0
made license check tolerate non-existing licenses
2014-10-21 05:40:26 +00:00
b7f078971b
added background threading (might be used in more than one script)
2014-10-15 08:32:53 +00:00
8985a2d7e6
fixed wrong position when comparing tables
2014-10-09 15:37:35 +00:00
033a275d82
a bunch of small changes. deleted compiled FFTW libraries
2014-10-02 21:27:03 +00:00
28a7c4c727
corrected (probable) bug in disorientation calculation.
2014-08-22 15:45:03 +00:00
d5e2e42f21
file handle closing can now be done from within class.
...
methods:
.input_close()
.output_close()
2014-08-22 15:37:46 +00:00
a8ced53b59
fix for the fix. now both, single column and single line files are working
2014-08-07 08:51:25 +00:00
1402527f48
fixed nasty bug cause strange behavior for voronoi tessellation
2014-08-06 19:32:26 +00:00
c8cd775747
added spectral solver grid location and index function to util library
2014-07-21 17:49:45 +00:00
28f3ba6841
fixed abaqus job submission
2014-06-25 08:32:33 +00:00
930cd0f3ac
improved abaqus test structure
2014-06-24 15:32:42 +00:00
1333921ed5
improved logging
2014-06-18 09:03:48 +00:00
7d8934c9f6
made some more functions case insensitive
2014-06-17 08:53:37 +00:00
eac0217b78
check for valid marc version
2014-06-17 07:29:05 +00:00
51b92f3ef9
simplified option parsing (so far, only for addCalculation and addMises)
2014-06-17 07:10:10 +00:00
488927a231
worked on phenopowerlaw test, made material.config writer case insensitive, polished lattice, removed deprecated part of documentation
2014-06-16 13:11:26 +00:00
25459823ee
improved on test scripts to support individual parser options
2014-06-11 17:46:26 +00:00
07765da01a
fixed typo
2014-06-07 08:36:43 +00:00
f928d9406d
replaced print output by logging class for better control over output (level, screen/file)
2014-06-04 15:34:35 +00:00
27ffa658b6
corrected use of variants
2014-06-03 17:19:56 +00:00
41b097bbc1
simplified updating
2014-06-03 13:09:52 +00:00
5321019457
updated some test related files as a preparation for a more intuitive automator
2014-06-03 10:30:51 +00:00
8493d6b414
now correctly detecting symbolic links for different marc versions
2014-05-16 06:21:50 +00:00
3d4ef650f3
simplified test scripts using msc.marc.
...
changed tolerance for hex test. was successfull for rev 3058, but now needs less strict tolerance, which seems to be related to the marc run script or the library, because with rev 3058 and current marc it has a slightly higher error
2014-05-09 11:29:35 +00:00
Martin Diehl