da23c916ca
polish
2021-11-21 15:49:04 -05:00
28ff027b38
exploit symmetry for stress calculation
2021-11-20 22:36:01 +01:00
a857285e34
backward transformation for Voigt
2021-11-20 22:09:01 +01:00
f6440f7f17
need to check 'any', adjusted tolerance
2021-11-20 15:18:48 +01:00
87100d1dce
avoid conversion Voigt-6x6 to 3x3x3x3
2021-11-20 15:15:59 +01:00
a6c311f410
commented
2021-11-20 12:16:32 +01:00
021d614daf
using Voigt notation
...
This is a bugfix with a change of behavior
2021-11-19 20:44:30 +01:00
ff9fa1d4f7
using Voigt notation instead of proprietary scaled 6x6 notation
...
Note: This results in a change of behavior for the transformation
systems of dislotwin. I assume that this fixes a bug, but still need to
confirm where the equations in lattice_C66_trans come from
2021-11-19 07:33:59 +01:00
fa8218124a
avoid conversions
2021-11-18 22:02:19 +01:00
038dd1fc40
correct names
...
whether C66 is homogenized or not is a decision of the caller
2021-11-18 21:31:08 +01:00
dfe6d0a195
more support for Voigt notation
2021-11-18 21:06:38 +01:00
020ef64d7d
explicit conversions
2021-11-18 19:37:48 +01:00
8a8fdfc93c
use Voigt notation
...
there is no advantage of using the symmetrized conversions
2021-11-18 17:33:08 +01:00
4d29393ced
simplified
2021-11-18 16:59:23 +01:00
f7a42bdc1a
avoid conversion to 3333
2021-11-18 16:56:36 +01:00
8d64a1c2f2
mark compressed notation
2021-11-18 16:37:34 +01:00
72c07cfc17
'present' propagates
2021-11-18 16:33:21 +01:00
29771feaae
cleaning
2021-11-18 14:43:05 +01:00
eee455c0d3
polishing
2021-11-18 13:12:14 +01:00
0badba032b
Merge remote-tracking branch 'origin/development' into dynamic-C
2021-11-18 10:29:33 +01:00
55d6b1dd1a
preparing for temperature dependent C by calling it dynamically
2021-11-17 21:35:39 +01:00
262ff03b9f
more consistent formatting of loops
2021-11-17 09:11:30 +01:00
4ebf14317a
Merge branch 'development' into pretty-print-init
2021-11-16 12:56:38 -05:00
58410709b9
Merge branch '136-skip-plasticity-calculations-for-purely-elastic' into 'development'
...
reduce computation effort for plasticity==none
Closes #136
See merge request damask/DAMASK!452
2021-11-16 16:28:25 +00:00
43ae4983ed
fixed misaligned/too short "writing..." statements
2021-11-15 12:58:59 -05:00
69843d0833
Merge branch 'development' into pretty-print-init
2021-11-15 12:39:14 -05:00
da9fdf53d2
consistent indentation and line-spacings in reporting
2021-11-15 12:35:44 -05:00
64d70d9be3
user option to have no output
...
f_out = none
2021-11-15 14:39:29 +01:00
f7dbda31e8
style adjustments
...
- two empty lines after variables
- enddo, endif should have space
2021-11-14 06:46:01 +01:00
2408b74cac
reduce computation effort for plasticity==none
2021-11-14 06:45:37 +01:00
aa6efd21cd
Merge remote-tracking branch 'origin/development' into initial-eigenstrain
2021-11-12 08:46:50 +01:00
8138d3a180
style adjustments
2021-11-11 23:59:48 +01:00
ba31ff7263
do not rely on ML per default
2021-11-11 23:23:14 +01:00
b7ad5b3167
'standard' style
2021-11-10 20:53:20 +01:00
186b688b04
only look for opening part of <CellData> tag
2021-11-09 15:10:19 -05:00
0514ca7a56
Merge remote-tracking branch 'origin/development' into initial-eigenstrain
2021-11-08 18:49:41 +01:00
a041551b9f
Merge remote-tracking branch 'origin/development' into mesh-order
2021-11-03 07:57:59 +01:00
f4f0163d5e
Merge remote-tracking branch 'origin/development' into initial-eigenstrain
2021-11-02 13:22:47 +01:00
e0b6a28b48
better matching name
2021-10-31 22:13:36 +01:00
737eff9179
bugfix: change of behavior
...
v_0 was erroneously introduced
use tau = (tau_pos+tau_neg)/2
2021-10-31 18:59:51 +01:00
6d117882c5
use precalculated value
2021-10-31 17:29:35 +01:00
fbc4865c30
mathematically equivalent re-formulation
...
allows to disable contribution from grain size by setting it to a large
value
2021-10-31 15:42:18 +01:00
f5fe0b9dca
bugfix: change of behavior
...
negative values for the resolved stress do not make sense.
The paper does not take this into account (eq (14), Cereceda et. al
2016). According to my understanding, only the non-thermal contributions should be
substracted, so abs(tau_pos)/abs(tau_neg) would not be sufficient.
2021-10-31 09:53:58 +01:00
e20b705f54
following dislotwin
2021-10-30 23:02:51 +02:00
bff186051c
simplified
2021-10-30 22:54:02 +02:00
bb757cf82e
style adjustments
2021-10-30 13:15:03 +02:00
f0a33b452f
unifying style
2021-10-28 07:05:14 +02:00
b4ff89f304
improved test
2021-10-27 22:54:26 +02:00
a00c6743c3
symbolic notation in numerics.yaml
...
- p_i: integration order
- p_s: shape function order
ensure working combination (p_s = p_i: full integration, p_s = p_i+1:
reduced integration)
2021-10-26 11:51:08 +02:00
fc42665838
Merge branch 'modern-complex-components' into 'development'
...
better readable
See merge request damask/DAMASK!444
2021-10-22 10:48:40 +00:00
256c48831e
better readable
2021-10-19 23:08:21 +02:00
2e340d3489
forgotten rename
2021-10-15 22:19:58 +02:00
519bb857d7
save list of files used for compilation
...
helpful for debugging and creating automated documentation
2021-10-15 22:15:08 +02:00
c628c028dc
SYNTAXONLY for mesh, avoid code duplication
2021-10-15 22:14:37 +02:00
dd7549a381
seems to work without further changes
2021-10-06 07:50:42 +02:00
29431eb8c5
same reporting as in python
2021-09-12 21:55:14 +02:00
949eea1624
bugfix: did not work with VTK 8
2021-09-01 11:07:39 +02:00
566e0445fc
old url is not working anymore
2021-08-25 08:18:46 +02:00
129ff28692
Merge remote-tracking branch 'origin/master' into misc-improvements
2021-08-24 16:04:32 +02:00
9061297e6e
typo
2021-08-19 19:57:52 +02:00
caf9a29b73
useful information, especially in logs from bug reports
2021-08-19 07:10:00 +02:00
411f35272a
offset should have been taken into account (like earlier)
...
new changes should not break old functionality
2021-08-19 06:10:44 +02:00
49ccbf3eb8
still not perfect:
...
https://stackoverflow.com/questions/32411963
2021-08-18 22:20:30 +02:00
93d23fa6bb
Merge remote-tracking branch 'origin/development' into YAML-bug-fix
2021-08-17 18:57:14 +02:00
a1fd45bded
offset should have been taken into account (like earlier)
...
new changes should not break old functionality
2021-08-17 17:46:22 +02:00
4160c4fdb4
fix for parallel HDF5
...
if filters are applied, writing from one process does not work if the
file is opened for parallel write
2021-08-15 13:26:15 +02:00
497bf2c645
avoid errors for empty datasets
...
empty dataset cannot be chunked, but filters can only be applied to
chunked datasets
2021-08-14 20:44:59 +02:00
1963343cd8
avoid issues with empty files
...
optional files (numerics.yaml, debug.yaml) can be empty
2021-08-14 20:01:25 +02:00
30d9f57db0
also compress string datasets
...
results in different type (numpy string instead of numpy object), tests need to be adjusted
2021-08-14 16:28:51 +02:00
595cc4e59e
always chunk data
...
for small datasets:
- only one chunk
- no compression
2021-08-14 15:48:07 +02:00
01d5458611
correct line continuation
2021-08-11 14:32:21 +02:00
c2e86a2b2a
lessons learned from compilation with Intel 2021.3
2021-08-10 23:47:13 +02:00
b29b0ecd71
Merge branch 'development' into report-systems
2021-08-10 09:16:13 +02:00
f75235f6a9
Merge branch 'more-flexible-L' into 'development'
...
more flexibility for the L in the load case
See merge request damask/DAMASK!420
2021-08-09 21:27:13 +00:00
cf66b81e3a
avoid code duplication
2021-08-07 22:02:44 +02:00
5b4b1c1933
enforce correct shape
2021-08-05 20:32:58 +02:00
00a053c4c8
Merge remote-tracking branch 'origin/development' into initial-eigenstrain
2021-08-05 16:25:27 +02:00
2635bb012c
Merge remote-tracking branch 'origin/development' into YAML-improvements
2021-08-05 14:49:33 +02:00
68eb930bf0
Merge remote-tracking branch 'origin/development' into report-systems
2021-08-03 21:57:50 +02:00
4a8c836117
Merge branch 'store-sim-setup' into 'development'
...
store information on slip and twin systems
See merge request damask/DAMASK!422
2021-08-03 13:16:59 +00:00
100215edb6
Merge remote-tracking branch 'origin/development' into YAML-improvements
2021-08-02 16:57:07 +02:00
c5a80bc75d
more readable
2021-08-02 16:50:21 +02:00
e8312a49ed
polishing
2021-08-02 10:38:59 +02:00
044a048944
taking care of corner cases (e.g. restart)
...
adjusting tests to take care of new 'setup' group
2021-08-01 22:46:11 +02:00
e97757bd25
Merge remote-tracking branch 'origin/development' into report-systems
2021-07-30 15:49:42 +02:00
e89a03d456
Suggestion by @Franz
2021-07-28 18:04:52 +02:00
578ee2b214
Merge remote-tracking branch 'origin/development' into YAML-improvements
2021-07-28 12:15:09 +02:00
3d7f15c940
meaningful error message incase of mismatch in quotes
2021-07-28 12:14:00 +02:00
5d0c0f4283
outdated instructions
2021-07-27 16:44:52 +02:00
af714cfd5b
broken Intel compiler (do concurrent)
...
errors occur under unclear conditions, better avoid at the moment:
https://community.intel.com/t5/Intel-Fortran-Compiler/do-concurrent-broken-with-openmp/m-p/1301528#M156942
https://community.intel.com/t5/Intel-Fortran-Compiler/Bug-with-do-concurrent-and-openmp/m-p/1173473m
2021-07-27 16:44:13 +02:00
07fb7f8fdf
save information on slip systems for reproducibility
2021-07-27 15:39:21 +02:00
a6f7e4f1a6
play it safe
2021-07-27 10:18:55 +02:00
64d52dbbf4
store input deck, MSC.Marc now 100% reproducible
2021-07-27 09:46:51 +02:00
26ae352a4c
make setup data easily accessible to the user
2021-07-27 09:38:47 +02:00
b9d4eb23cc
only rank 0 reads file for MPI
2021-07-27 08:54:17 +02:00
812b0f07f5
read file only once (per process)
2021-07-27 08:35:52 +02:00
367c088b16
sorting according to dependency (no Makefile)
2021-07-27 08:00:24 +02:00
ddb0429a1d
store load case (full reproducibility for grid solver)
2021-07-27 07:57:04 +02:00
e01d271ee4
store geometry (for full reproducibility)
2021-07-27 07:43:35 +02:00
3b06498c2f
make results self-contained for reproducibility
...
ToDo: same functionality for load and geom
2021-07-27 07:40:55 +02:00
f20302e0ee
early initialization of results
...
need to be done before config if config writes to it
2021-07-27 07:27:18 +02:00
820d590b6b
write string to result
...
requires to open file without MPI support
2021-07-27 07:25:44 +02:00
58c1f5fdc1
write string, only from one MPI process
...
needed to store simulation setup. I don't see a situation where strings
are distributed over multiple processes
2021-07-27 07:23:02 +02:00
a891fe4281
keep it simple
2021-07-26 22:59:53 +02:00
558a643120
microstructure is now dependentState
2021-07-26 22:56:40 +02:00
b5dade2f70
Report slip system definition to result file
2021-07-26 22:49:19 +02:00
855186eb83
Merge remote-tracking branch 'origin/development' into report-systems
2021-07-26 20:29:23 +02:00
c7ed0e7934
Merge remote-tracking branch 'origin/development' into do-concurrent
2021-07-26 20:20:52 +02:00
012f09caa7
Merge branch 'plastic-name-behavior-fix' into 'development'
...
adjusted names and behavior of dislo(tungsten + twin) + kinehardening
See merge request damask/DAMASK!419
2021-07-26 14:51:20 +00:00
ac6d31b1f9
Merge branch 'polishing' into 'development'
...
Polishing
See merge request damask/DAMASK!418
2021-07-26 13:09:49 +00:00
f1f658bbd2
Merge remote-tracking branch 'origin/development' into plastic-name-behavior-fix
2021-07-26 15:07:53 +02:00
6a9c892d7b
Merge branch 'write_ipdisplacements' into 'development'
...
Write ip displacements
See merge request damask/DAMASK!414
2021-07-26 09:01:04 +00:00
e56f2e09a4
trivial and never used
...
even the more commoly used fucntions for 3x3 matrices are not all in use
2021-07-26 10:22:53 +02:00
d19ab4c4f6
co concurrent possible here
...
note: do concurrent cannot be used for the double loops for 66 to 3333!
2021-07-25 14:37:50 +02:00
61a3b33e71
output info about used slip/twin systems
2021-07-25 14:11:07 +02:00
31a4000655
no need for arbitrary dimension
...
not sure if correct, not used at all (even identity4th for 3 dim is not
used, but now at least tested)
2021-07-25 13:32:11 +02:00
3bb5ae3d9e
concurrent/parallel execution is possible here
2021-07-25 13:20:39 +02:00
d2b5a4b339
pointer voodoo for ifort
2021-07-25 10:30:44 +02:00
18b3424975
handle twin and slip systems
2021-07-25 10:12:01 +02:00
c388ab97c9
trying to make sense of HDF5 pointer magic
2021-07-25 09:43:52 +02:00
d9ef1ef5e4
write variable length string (as other, best compatibility with h5py)
2021-07-25 09:36:56 +02:00
26e1e979f5
length is known
2021-07-24 23:08:05 +02:00
71e17ba917
WIP: report active slip systems to DADF5
...
needs further work, currently an array of fixed length strings is
written while all single strings are of variable length type
2021-07-24 22:51:57 +02:00
a98ae267a0
option to initialize F_i
...
start simulation with eigenstrain. Works only for moderate
eigentstrains, reaching the plastic limit is most likely an issue.
2021-07-24 18:47:45 +02:00
b3f5e12232
using burgers vector of tw/tr system seems to make more sense here
...
otherwise twinning will not work in many cases.
Matching number is only required for nucleation of tw/tr
2021-07-24 18:37:25 +02:00
ae49920256
support single and double quotes in key value pairs also
...
escape characters not supported in double quotes
2021-07-24 17:40:27 +02:00
59d09d708e
string array support for attributes
2021-07-24 17:18:31 +02:00
eef7b8f0a9
nothing to select anymore
2021-07-24 15:16:30 +02:00
d87b10bfe7
symbolic names
2021-07-24 15:03:26 +02:00
db07ee2113
supported by recent compilers
2021-07-24 14:35:17 +02:00
f22f30e05d
same functionality as for 1D
2021-07-24 14:27:00 +02:00
d6ce721a25
need to check type of leaf
...
otherwise, using a [list] where a scalar is expected results in a crash,
not in a meaningful error message
2021-07-24 12:10:59 +02:00
931dc99557
not used
...
climb formulation was updated a while ago
2021-07-24 11:21:07 +02:00
d4ffc778c2
easier to read
...
removed comment regarding use of dot_state in kinetics_t(w/r). Data stored
in dotState is not reliable, FPI integrator for writes to it and Runge-Kutta
calls the dot state function at different time steps
2021-07-24 07:11:31 +02:00
527fd306e2
change of behavior
...
- gamma (state) increases monotoneously
- region of spontaneous annihilation is ignored in dipole formation
2021-07-23 22:25:06 +02:00
2a78174547
standard names in source code
2021-07-23 22:17:00 +02:00
c46813657f
better to understand
2021-07-23 21:56:34 +02:00
f96b0371ac
proper output name/format
2021-07-23 21:48:40 +02:00
6936ecb091
sl is the subscript for slip
2021-07-23 21:36:26 +02:00
a5c4e7232c
probably not needed
...
We remove blank spaces while converting to flow YAML.
2021-07-23 18:37:45 +02:00
c347688410
Merge remote-tracking branch 'origin/development' into YAML-improvements
2021-07-23 17:55:03 +02:00
ca8775e0d4
allow " " in YAML, follow yamllint.
2021-07-23 17:45:10 +02:00
d216e77ca6
default values for p/q are dangerous
2021-07-23 09:07:39 +02:00
2cc8612572
consistent variable names
2021-07-23 07:16:08 +02:00
f6378790f1
following python
...
we might want to rename the whole module from 'lattice' to 'crystal'
2021-07-23 06:46:17 +02:00
f5af352644
whitespace adjustments
2021-07-23 00:09:51 +02:00
d682b477dd
following paper
2021-07-22 23:22:45 +02:00
85fd2e3fad
not needed
2021-07-22 23:15:20 +02:00
3f7043de74
standard name
2021-07-22 23:15:20 +02:00
7e27baacfe
missing conversion
2021-07-22 21:39:05 +02:00
bd9cae11a5
allow multi line scalar list items.
...
If a scalar list item has ',', the parser would consider it as a separator and not a part of the string
For the moment, this scalar item is enclosed with double quotes ""
In the next step, the flow parser should be able to use this quotes as an indicator for strings
2021-07-22 15:51:33 +02:00
a03aa97970
default name
2021-07-22 15:41:09 +02:00
4fab078d18
multinomial tested+simplified
2021-07-22 15:31:30 +02:00
d9aa638ad7
shorter
2021-07-22 15:11:38 +02:00
5ac592eb9e
initialize L_(i/p), L_(i,p)0
2021-07-22 12:31:10 +02:00
69cc0b528b
do calculation for initialization
2021-07-22 11:38:03 +02:00
aa03e59306
same statement, different syntax but silences gfortran runtime warning
...
with automated LHS, compiling in DEBUG mode (tested for mesh solver)
gives:
home/m/DAMASK/src/phase_mechanical.f90:1010:43: runtime error: signed integer overflow:
-9223372036854775808 - 1 cannot be represented in type 'integer(kind=8)'
2021-07-22 11:24:10 +02:00
5b66db8a39
only mechanics at the moment
...
will be extended, but most likely differently
2021-07-22 10:12:43 +02:00
eb834b635d
unify notation with grid
...
consistent style: Symbols, not descriptions.
also removed untested/unused loginc functionality. Once load cases are
written in YAML, we can introduce the scaling as in DAMASK_grid
2021-07-22 08:48:44 +02:00
173a5f8e55
less public/unneeded variables
2021-07-22 07:48:01 +02:00
574cfd7034
Merge remote-tracking branch 'origin/development' into more-flexible-L
2021-07-22 00:20:33 +02:00
de7ef43095
documenting/silencing gfortran
2021-07-21 23:49:24 +02:00
aace5d25a8
initialization needed
2021-07-21 23:19:41 +02:00
58a7921966
no need for temp, pack instead of reshape for 1D array
2021-07-21 22:45:04 +02:00
b817c620a3
let the computer count
2021-07-21 21:25:33 +02:00
23077fd58c
testing coordinates
...
I don't understand why this pattern exists (with w(2) = 3, w(3) = 2),
but it exists
2021-07-21 19:42:53 +02:00
5a04a1d661
let the computer do the counting
2021-07-21 19:41:14 +02:00
c56979e2ad
single source of truth
2021-07-21 18:47:19 +02:00
000007ba59
better test automatically
2021-07-21 18:06:37 +02:00
b1ba64e6af
understanding floating point precision
...
double can use 16 or 17 significant figures
- if the leading number is high (above 5 or so), only 16 figures are
significant.
- a trailing 1 is never significant
2021-07-21 18:04:50 +02:00
76572e4ca9
standard notation
2021-07-21 16:34:33 +02:00
e3e9dfdc60
following paper
2021-07-21 16:29:57 +02:00
8feeda6f05
phase_mechanical_elastic should store data related to elasticity
2021-07-21 16:23:21 +02:00
fc5237fa80
using central values
2021-07-21 15:46:38 +02:00
8259cb3cdc
notation as in paper
2021-07-21 15:03:28 +02:00
b2e94974ca
short names
2021-07-21 14:52:37 +02:00
f25dee4c3a
quad points updated and rounded based on literature values
2021-07-21 14:34:18 +02:00
df1fe39dc2
Merge remote-tracking branch 'origin/development' into write_ipdisplacements
2021-07-21 13:30:12 +02:00
9d349f8a7c
symbolic notation
2021-07-21 06:50:28 +02:00
b5bf1d525e
Merge remote-tracking branch 'origin/development' into more-flexible-L
2021-07-21 06:36:05 +02:00
6f19113072
L, P, F, etc. are second order tensors
2021-07-21 06:19:04 +02:00
b98819a36c
adjusting names
2021-07-20 18:29:21 +02:00
a919ac0aea
Merge branch 'write_ipdisplacements' of git.damask.mpie.de:damask/DAMASK into write_ipdisplacements
2021-07-20 15:35:48 +02:00
86d918367f
Round quadrature points
2021-07-20 15:34:13 +02:00
85735605f8
more flexibility for the L in the load case
...
Note that mixed boundary conditions for L introduce an ambiguity.
Consider:
L = [[1.0, x, x],
[ 0, 0, 0],
[ 0, 0, 0]]
P = [[x, 0, 0],
[x, x, x],
[x, x, x]]
What we need is F^(n+1)=F_dot^(n+1) x Delta_t, where F_dot^(n+1) is
F_dot^(n+1)_ij = L_ik F^n_kj.
So component F_11 has contributions from L_12 and L_13. We first assume
L_12=L_13=0 and then choose F^(n+1)_12 and F^(n+1)_13 to get
P_12=P_13=0. This implicitly gives a solution for L_12 and L_13, which
is however only one out of infinitely many.
2021-07-20 07:10:28 +02:00
03b7532cc5
numpy.MaskedArray behavior
2021-07-19 23:27:10 +02:00
1c1dc9383e
symbolic names
2021-07-19 22:30:20 +02:00
4a2e62fdb2
Merge branch 'development' into 'write_ipdisplacements'
...
# Conflicts:
# src/mesh/mesh_mech_FEM.f90
2021-07-19 17:19:40 +00:00
a654cd4fb1
To avoid fortran double variable truncation for quadrature points
2021-07-19 17:07:43 +02:00
97203ff551
document and keep definitions together
2021-07-18 23:30:30 +02:00
53b7aab29d
use ph,en access pattern
2021-07-18 09:48:49 +02:00
6ad6158bfb
(en)try is the name used in the DADF5 file
2021-07-18 09:44:52 +02:00
57ad308a7f
readable
2021-07-18 09:22:12 +02:00
d068f45aa0
avoid superflouos damage calculations
2021-07-17 15:25:00 +02:00
c109d5a37b
better have different physics separated
2021-07-17 14:06:48 +02:00
f9edeb40a5
descriptive names
2021-07-17 11:50:21 +02:00
e6d25294d3
separating functionality
2021-07-16 23:32:08 +02:00
fc735d6391
substate0 only needed for staggered state-stress integration
2021-07-16 23:19:48 +02:00
777620b800
polishing
2021-07-16 22:41:38 +02:00
594ad2c310
semi-separate handling of damage
2021-07-16 22:22:41 +02:00
Philip Eisenlohr