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DAMASK_EICMD
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1656 Commits

Author SHA1 Message Date
Martin Diehl 4788fc6046 making use of new class 
@philip: 1D arrangement needed?
 2019-05-25 08:37:02 +02:00
Martin Diehl 6c7f7c77da specifying non-existing or invalid files is an user error 
this is the standard behavior for common unix tools, no need to make an
exception here
 2019-05-25 08:24:32 +02:00
Martin Diehl cf374a04dc using new class 2019-05-25 08:21:00 +02:00
Martin Diehl 420abfa162 use new class 2019-05-24 22:34:27 +02:00
Philip Eisenlohr eb13fbc0ce streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max 2019-05-23 13:03:24 -04:00
Philip Eisenlohr e6cec6ecbe added option to reverse inside/outside of primitive body 2019-05-23 12:49:03 -04:00
Franz Roters 998789528c Merge branch 'HDF5-out-homog-2' into 'development' 
Hdf5 out homog 2

See merge request damask/DAMASK!78
 2019-05-13 17:34:59 +02:00
Vitesh Shah feb1465803 Better to have actual increment num in output file 2019-05-08 17:31:18 +02:00
Martin Diehl 0cc2b1214d store requested data in ASCII file 2019-05-07 15:18:12 +02:00
Martin Diehl 1eaf67ad82 store results in subdirectory 
defaults to postProc
 2019-05-07 13:30:05 +02:00
Martin Diehl f65423fe9f rudimentary postResults for HDF5 output 
only meant for compatibility during transition
 2019-05-05 10:09:23 +02:00
Martin Diehl 8a9baf6d78 preparing output of mech_homog to HDF5 2019-04-30 18:45:38 +02:00
Philip Eisenlohr d74599d39a Merge branch 'HDF5-postprocessing' into 'development' 
Hdf5 postprocessing

See merge request damask/DAMASK!72
 2019-04-29 23:24:42 +02:00
Martin Diehl 6b7fd6b7ea visualizing data from DADF5: first prototype 2019-04-18 11:58:17 +02:00
Martin Diehl 7177813710 adding data to geometry 2019-04-17 19:57:16 +02:00
Martin Diehl 8eb1a35dfb first version of a library to parse HDF5 
- preliminarly called DADF5 (DAMASK HDF5)
- script to write (empty undeformed) geometries is also added
 2019-04-13 11:25:53 +02:00
Martin Diehl 0c6fde97f9 wrong positions for point visualization 
- now the cell centers are at the centers of the cells for cell
visualization
 2019-04-13 00:42:05 +02:00
Martin Diehl ed7423a3d6 bug fixes 2019-03-10 08:16:01 +01:00
Martin Diehl 67619fa92a consistent definition of axis angle 2019-03-09 20:18:28 +01:00
Martin Diehl 433281f71d following Rowenhorst convention 2019-03-09 19:58:17 +01:00
Martin Diehl 0d08659b2a general cleaning 2019-03-09 11:11:40 +01:00
Martin Diehl 60feb96afd let vtk decide on the file extension 2019-03-09 11:11:40 +01:00
Martin Diehl 5ab8e50d09 consistent with reference paper 2019-03-08 19:07:19 +01:00
Martin Diehl b84d4f1b6a improved error handling/clearer messages 2019-03-05 10:58:57 +01:00
Philip Eisenlohr e030038b73 [skip ci] added --blank option to create fresh canvas (from nothing) 2019-02-27 19:37:38 -05:00
Philip Eisenlohr c706ca5ba3 no progress bars in quite mode 2019-02-26 21:22:49 -05:00
Eureka Pai f3d2803443 addMises failed for single run of either --stress or --strain 2019-02-25 19:29:12 -05:00
Eureka Pai 2089726800 corrected output extension of vtk files to reflect binary format 2019-02-25 18:48:40 -05:00
Eureka Pai e401c21266 dropped obsolete option --inplace from geom_check 2019-02-25 18:30:45 -05:00
Martin Diehl e88182b007 improved converte, now with test 
still needs to figure out how +P is handled
 2019-02-24 14:39:34 +01:00
Martin Diehl 0d7fd587e3 direct translation from DREAM.3D to DAMASK geom 
needs test
 2019-02-24 12:59:10 +01:00
Martin Diehl 95be7ef938 directly convert to geom file + material config 2019-02-24 10:33:30 +01:00
Martin Diehl 903edcd429 do not patronize the user, rather give hints 2019-02-24 10:31:08 +01:00
Martin Diehl d3ac3cc0f5 using new Orientation class 2019-02-24 08:34:20 +01:00
Martin Diehl 9dc8dff4b1 cleaning and adding compatibility layer 2019-02-23 22:35:04 +01:00
Martin Diehl 9fa2553af4 task for DREAM.3D if needed 
pointwise takeover should not be a problem anymore as reading in takes
no time (at least in comparison to addGrainID)
 2019-02-23 22:14:55 +01:00
Martin Diehl a8e8b75cc0 use new rotation class 2019-02-23 22:13:24 +01:00
Martin Diehl fff377de7f initial simplification. 
Should be able to generate from table containing either <microstructure>
or <texture> and <phase>
 2019-02-23 22:06:31 +01:00
Martin Diehl b3455c825e transition to new orientation class 
forward-backward conversion quite stable
 2019-02-23 21:49:05 +01:00
Martin Diehl e4bb61c9d9 transition to new orientation class/DREAM.3D 2019-02-23 11:37:09 +01:00
Martin Diehl 93ae5cbd07 Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3 2019-02-22 23:05:36 +01:00
Satyapriya Gupta 3bec76e781 can now deal with 1x1x1 geoms 2019-02-19 12:06:46 -05:00
Martin Diehl 25727bfa52 using CamelCase 2019-02-19 10:32:18 +01:00
Martin Diehl 43a451b2e1 inplace not useful 
use shell script if you want to keep an backup of your old data
 2019-02-18 14:36:04 +01:00
Martin Diehl 27ebe1f665 improved documentation 2019-02-17 08:17:40 +01:00
Martin Diehl 5c20609e81 more verbose help, drop support for really old vtk 2019-02-16 22:20:44 +01:00
Martin Diehl 802ef6fe5c more precise help 2019-02-16 18:25:41 +01:00
Martin Diehl c6781e415a using default notation for vector access 2019-02-16 18:23:00 +01:00
Martin Diehl 0b1bfdfd4e was only working with python2 2019-02-16 18:17:05 +01:00
Martin Diehl 29fc53fdcb more specific about invocation 2019-02-16 17:41:56 +01:00
Martin Diehl fa003e8077 small adjustments for autodoc 2019-02-16 15:26:21 +01:00
Martin Diehl 4ce151c967 camel casing (easer for foswiki) 2019-02-15 23:22:51 +01:00
Martin Diehl 0cc4e582e4 Merge branch 'development' into 26_autodoc-2 2019-02-15 20:47:14 +01:00
Martin Diehl 566099ad81 automatic documentation for some post processing scripts 2019-02-15 18:52:47 +01:00
Philip Eisenlohr dc133344b6 [skip ci] migrated to python3 compatibility 2019-02-14 18:44:06 -05:00
Philip Eisenlohr d58c3008ae fixed too long line in addLinked 2019-02-14 18:31:22 -05:00
Philip Eisenlohr 742d58cfce added ASCIItable tests to CI pipelining 2019-02-14 18:24:09 -05:00
Martin Diehl c4cb35891c all fine with python3 2019-02-14 22:56:39 +01:00
Martin Diehl 889cfc8ba0 vtk script only work with python3 on new testing 2019-02-14 01:39:54 +01:00
Martin Diehl 217024667b forgotten comma 2019-02-12 11:30:43 +01:00
Martin Diehl 608852df83 rotation paper has angle as last component 2019-02-12 10:58:38 +01:00
Martin Diehl 7da8980cc0 bugfixes: wrong shape, wrong conversion 2019-02-12 09:04:35 +01:00
Martin Diehl 336a80091f rodrigues is 4-vector with rotation being the last component 
established a single source of truth for length
 2019-02-12 08:59:26 +01:00
Martin Diehl 97ac437686 more user friendly constructors 2019-02-12 08:14:27 +01:00
Martin Diehl ef3fc0b58a bugfix: wrong array indexing 
rotation of meshgrid tuple implemented
 2019-02-12 07:42:46 +01:00
Martin Diehl 48b0307fab using new rotation class 
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
 2019-02-12 00:27:13 +01:00
Philip Eisenlohr 74956c0290 avoid error for empty "name" 2019-01-23 20:59:07 -05:00
Martin Diehl da115ca9d4 probably never used and outdated (python2.7) 
doing the same conversion via DREAM.3D will be available soon
 2019-01-16 17:51:37 +01:00
Martin Diehl c5dabbb68f correct comment sign 
the # indicates the end of a list
 2019-01-09 16:31:00 +01:00
Martin Diehl 0dca8d2740 compatible to python 3 and mentat >= 2017 2019-01-09 16:28:21 +01:00
Martin Diehl 1192f16582 Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5 2019-01-06 20:56:36 +01:00
Martin Diehl 7768c5874b simpler interface for progress bar 2019-01-05 10:41:49 +01:00
Martin Diehl c00d00c219 Merge remote-tracking branch 'origin/development' into misc-improvements 2019-01-05 09:22:41 +01:00
Philip Eisenlohr 3c5df0a4a4 [skip ci] viewTable acknowledges requested output type(s) 2019-01-04 16:34:21 -05:00
Philip Eisenlohr bcd4288f1e [skip ci] groupTable according to unique values in more than one column 2019-01-03 18:25:28 -05:00
Philip Eisenlohr b5d62c8e29 [skip ci] print estimated remaining processing time for postResults 2019-01-03 11:31:04 -05:00
Martin Diehl 835e3f95a5 [skip ci] was not used 2018-12-31 08:05:56 +01:00
Martin Diehl 6f40989465 order was randomized when creating dict 2018-12-31 07:18:45 +01:00
Martin Diehl a992b8b1f5 random order caused test to fail 
rather a workaround, but since HDF5 is coming...
 2018-12-30 11:41:22 +01:00
Philip Eisenlohr 9bdd4d1d68 added <!skip> line to stop config parser from trying to interpret rest of geom description---huge speedup!! 2018-12-20 17:22:29 -05:00
Philip Eisenlohr 25a80723c0 numpy interface changed to be strict about 2D array shape in histogram 2018-12-20 17:14:55 -05:00
Martin Diehl 1ef82e351b Merge branch 'orientationClass_with_negative_P' into development 2018-12-20 20:43:00 +01:00
Philip Eisenlohr 7df6dfbf3f renamed "showTable" to "viewTable" to avoid clashing with astropy.table module 2018-12-18 15:10:26 -05:00
Martin Diehl 5d7f930592 math.isclose does not exist for older versions 
np.isclose does the same
 2018-12-17 20:04:16 +01:00
Martin Diehl 3bab08fdeb Merge branch 'development' into 56-parallel-hdf5 2018-12-12 07:46:02 +01:00
Martin Diehl 1f2fbbee21 consistent name 2018-12-10 09:38:57 +01:00
Martin Diehl 767650e002 more general option + improved descriptions 
hopefully more user friendly
 2018-12-10 09:27:39 +01:00
Martin Diehl d219842ad8 [skip ci] consistent tolerances 2018-12-09 20:19:33 +01:00
Martin Diehl 60686fb72c [skip ci] improved reporting 2018-12-09 18:05:37 +01:00
Martin Diehl bc04b83d8a no reason for using python2.7 2018-12-09 14:09:26 +01:00
Martin Diehl 08ac49fac0 line too long 2018-12-09 13:21:56 +01:00
Martin Diehl 130fac21c6 cleaning 2018-12-09 13:15:59 +01:00
Martin Diehl d43dfa569b lines too long 2018-12-09 12:37:27 +01:00
Martin Diehl 65165ffc5e assumed wrong type 
quaternion should have lenght one
 2018-12-09 12:35:32 +01:00
Martin Diehl 697d97cd38 cleaned 
legacy format was for pre-MPI output where the extra bytes at start and
end of a chunk (Fortran out) had to be handled manually
 2018-12-09 12:30:07 +01:00
Martin Diehl 5054291557 python3 compatible status message 2018-12-09 12:25:31 +01:00
Martin Diehl 741032339e time/math/datatype are not used/defined any more 2018-12-09 11:05:35 +01:00
Martin Diehl aefa006d09 simplified 
assume quaternions as input
 2018-12-09 10:53:53 +01:00
Martin Diehl 213e31ff87 string was split into letters 2018-12-09 10:53:25 +01:00
Martin Diehl d9b47f09bc modernized 
split arguments logically, assume 3-vector for coordinates
 2018-12-09 10:52:37 +01:00