Philip Eisenlohr
|
382727f2d6
|
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
|
2016-04-22 13:13:42 -05:00 |
Philip Eisenlohr
|
a1927f84c4
|
renamed "coordinates" option to "position".
added explicit choice to write out as legacy format.
|
2016-04-22 13:09:23 -05:00 |
Martin Diehl
|
a3da663931
|
piping was broken
|
2016-04-22 17:59:50 +02:00 |
Martin Diehl
|
c57c76085f
|
missing labels
|
2016-04-21 15:41:35 +02:00 |
Martin Diehl
|
28423d4b45
|
increment information got lost
|
2016-04-21 11:31:02 +02:00 |
Martin Diehl
|
8ec9243016
|
new label name
|
2016-04-21 11:06:39 +02:00 |
Philip Eisenlohr
|
13e214fe18
|
added support for legacy VTK format
|
2016-04-18 15:08:29 -04:00 |
Philip Eisenlohr
|
0bc7f36ee5
|
added (transparent) capability to deal with geom files.
|
2016-04-18 14:49:11 -04:00 |
Philip Eisenlohr
|
24d029c7ed
|
speed up (x 5 to 10) identification of most frequent microstructure index
|
2016-04-15 18:54:09 -04:00 |
Philip Eisenlohr
|
81f6530f52
|
changed default label of coordinates to "pos"
|
2016-04-15 18:27:23 -04:00 |
Philip Eisenlohr
|
7567aae7c0
|
now deals with 1D, 2D, 3D. speed up of grid detection. "pos" as default coordinate label.
|
2016-04-15 18:25:56 -04:00 |
Philip Eisenlohr
|
8ac40ced5a
|
coordinates of nodal or cell-centered values are always labelled "pos"
|
2016-04-15 18:23:35 -04:00 |
Philip Eisenlohr
|
cbe9afb2b3
|
removed --mode option. script figures on its own.
|
2016-04-15 14:06:01 -04:00 |
Philip Eisenlohr
|
3474800db1
|
switched coordinates default from "ipinitialcoords" (ugh) to "pos"
|
2016-04-15 14:04:10 -04:00 |
Philip Eisenlohr
|
f040842ed4
|
superseded by addDisplacements
|
2016-04-15 07:41:55 -04:00 |
Philip Eisenlohr
|
01ba11448c
|
small polishing of remark output regarding <3D vectors
|
2016-04-15 07:41:24 -04:00 |
Martin Diehl
|
91753d5322
|
more style related changes
|
2016-04-15 00:35:21 +02:00 |
Martin Diehl
|
5682d8f627
|
also not needed
|
2016-04-15 00:11:03 +02:00 |
Martin Diehl
|
6aa6b418ea
|
not needed (Philip has different names)
|
2016-04-15 00:08:01 +02:00 |
Martin Diehl
|
573d10f1e1
|
Merge branch 'development' into NoCoreModule
|
2016-04-15 00:05:38 +02:00 |
Philip Eisenlohr
|
dbfd107b48
|
Add deformed configuration of given initial coordinates.
Operates on periodic three-dimensional x,y,z-ordered data sets.
Replaces 3Dvisualize..!
|
2016-04-14 17:53:48 -04:00 |
Philip Eisenlohr
|
170d377092
|
much improved algorithm to speed up grain identification.
|
2016-04-13 19:36:24 -04:00 |
Philip Eisenlohr
|
1994b5a4c1
|
removed debug messages
|
2016-04-13 19:29:04 -04:00 |
Philip Eisenlohr
|
ea0bc80af9
|
modernized to reflect rectilinearGrid processing. Now supports vector data and in-place adding.
|
2016-04-13 18:03:40 -04:00 |
Philip Eisenlohr
|
0b09ce31db
|
changed coordinate option to be consistent with rectilinearGrid.
|
2016-04-13 17:49:48 -04:00 |
Philip Eisenlohr
|
feae2164fc
|
polishing and now explicitly closing input table.
|
2016-04-13 17:48:49 -04:00 |
Philip Eisenlohr
|
6e2ca7d595
|
Removed hard requirement of 3D dataset. Fills in necessary dimensions.
|
2016-04-13 17:48:17 -04:00 |
Martin Diehl
|
70afa462b2
|
should work now with odd resolution as well
|
2016-04-11 20:25:24 +02:00 |
Martin Diehl
|
18f18aa4b9
|
detabbing
|
2016-04-11 19:55:55 +02:00 |
Martin Diehl
|
82063494fd
|
adopted to new json format of paraview
introduced "standard" colormaps for stress, strain, and orientation
file is now implicit the first argument without key (in line with other scripts)
|
2016-04-11 19:47:07 +02:00 |
Martin Diehl
|
f483c6a404
|
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
|
2016-04-11 16:06:00 +02:00 |
Martin Diehl
|
d278d86f9d
|
long line
|
2016-04-11 13:24:43 +02:00 |
Martin Diehl
|
b1d714581c
|
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
|
2016-04-10 15:40:52 +02:00 |
Philip Eisenlohr
|
b0496f20ca
|
grouped command line options.
removed functionality to add random second phase.
|
2016-04-08 17:47:02 -04:00 |
Philip Eisenlohr
|
2354cd609a
|
small polishing of help.
added option to change output number format.
|
2016-04-08 17:46:06 -04:00 |
Philip Eisenlohr
|
3e6d2710a3
|
added option to report probability density
|
2016-04-05 16:18:34 -04:00 |
Philip Eisenlohr
|
e9ec497da6
|
fixed bug preventing files specified with full path to be treated properly
|
2016-04-05 16:17:55 -04:00 |
Philip Eisenlohr
|
fcddf9345e
|
added option for non-uniform weights
|
2016-03-27 17:54:49 -04:00 |
Philip Eisenlohr
|
7c72ede29d
|
now works properly for labels specified as index (instead of string)
|
2016-03-27 16:29:45 -04:00 |
Philip Eisenlohr
|
0d93a47c71
|
Generate histogram of N bins in given data range.
|
2016-03-27 13:34:19 -04:00 |
Martin Diehl
|
97314619cc
|
corrections
|
2016-03-26 19:59:05 +01:00 |
Martin Diehl
|
7423c1a06a
|
not needed anymore
|
2016-03-24 18:47:11 +01:00 |
Martin Diehl
|
04d2148e61
|
will replace geom_fromAng (in combination with geom_fromTable)
|
2016-03-24 17:55:15 +01:00 |
Martin Diehl
|
ea28bc8f06
|
restored script for calculation of nodal positions
|
2016-03-24 16:19:49 +01:00 |
Martin Diehl
|
8b89063113
|
less core module
|
2016-03-24 14:19:00 +01:00 |
Martin Diehl
|
60a3ac5b04
|
copied fortran code
|
2016-03-24 12:35:33 +01:00 |
Martin Diehl
|
022b089fa7
|
cleaned core module related stuff
|
2016-03-24 11:49:23 +01:00 |
Martin Diehl
|
4592db8dfb
|
added python based geometry reconstruction
|
2016-03-24 10:37:15 +01:00 |
Martin Diehl
|
809f03bef5
|
new printing for python3 and corrected help
|
2016-03-23 17:02:51 +01:00 |
Martin Diehl
|
466178cfc7
|
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
|
2016-03-23 11:06:11 +01:00 |
Martin Diehl
|
900d2f7bf2
|
output follows damask.croak syntax
|
2016-03-23 11:05:36 +01:00 |
Philip Eisenlohr
|
0840a5f42e
|
modernized orientation treatment and adopted slip systems from lattice.f90
|
2016-03-22 20:52:02 -04:00 |
Martin Diehl
|
fafedd5cd6
|
Merge branch 'LargeFiles' into development
|
2016-03-22 15:45:42 +01:00 |
Philip Eisenlohr
|
a41cd3df40
|
added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid.
|
2016-03-20 16:46:35 -04:00 |
Philip Eisenlohr
|
6865987ea7
|
restored option to output microstructure indices as one-dimensional list (not clear why that got lost!)
|
2016-03-20 15:01:47 -04:00 |
Philip Eisenlohr
|
e39441f36b
|
corrected usage message to tell about string comparison in filter condition
|
2016-03-17 19:02:30 -04:00 |
Aritra Chakraborty
|
0f78f1c747
|
possibility to treat floating point numbers as microstructure indices
|
2016-03-17 18:09:22 -04:00 |
Aritra Chakraborty
|
36c703ecd3
|
shortened excessively long lines
|
2016-03-16 15:20:31 -04:00 |
Aritra Chakraborty
|
3a267dc7ff
|
FFT-based gradient calculation of scalar or vector field data (sibling of addCurl and addDivergence)
|
2016-03-16 15:02:38 -04:00 |
Aritra Chakraborty
|
ce26ad06da
|
polishing and introduction of locally derived grid in FFT subroutine
|
2016-03-16 15:01:22 -04:00 |
Philip Eisenlohr
|
6197e839c9
|
fixed missing file extension when adding in-place
|
2016-03-15 14:52:10 -04:00 |
Martin Diehl
|
f857353e16
|
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
|
2016-03-11 12:49:47 +01:00 |
Martin Diehl
|
b0dedb8cbd
|
=addOrientation can do the same (and more)
|
2016-03-09 19:02:28 +01:00 |
Philip Eisenlohr
|
e9338200eb
|
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
|
2016-03-09 12:28:52 -05:00 |
Philip Eisenlohr
|
b933359f17
|
clarified text of error message complaining about wrong input dimension
|
2016-03-09 12:28:36 -05:00 |
Philip Eisenlohr
|
4dfd59a9e2
|
output complete microstructure and texture info instead of limiting to grainIDs used in geometry
|
2016-03-07 22:15:40 -05:00 |
Martin Diehl
|
f13ba71f6e
|
fixed typo
|
2016-03-04 17:24:13 +01:00 |
Martin Diehl
|
48233d2767
|
missing variable
|
2016-03-03 14:58:04 +01:00 |
Martin Diehl
|
a51f2a29f6
|
cleaning
|
2016-03-03 14:53:55 +01:00 |
Martin Diehl
|
76a0a93c42
|
removed unneeded variables, fixed docstrings. missing variable jc in Barlat1989 from 46c33b0
|
2016-03-03 14:52:47 +01:00 |
Martin Diehl
|
3ff3bb1a5b
|
pre processing finished
|
2016-03-03 14:44:51 +01:00 |
Martin Diehl
|
93d7643875
|
no long lines anymore and prospector is also happy
|
2016-03-03 14:44:29 +01:00 |
Martin Diehl
|
9fa49b8584
|
vtk files, mainly removed from vtk import *
|
2016-03-02 13:52:33 +01:00 |
Martin Diehl
|
f7fedc4744
|
next bunch of accepted scripts
|
2016-03-02 13:50:57 +01:00 |
Martin Diehl
|
3ed3073eff
|
more...
|
2016-03-02 11:29:07 +01:00 |
Martin Diehl
|
e89923d6d3
|
next round
|
2016-03-02 11:11:20 +01:00 |
Martin Diehl
|
5d7e138a9b
|
long line
|
2016-03-02 10:55:21 +01:00 |
Martin Diehl
|
f77de7ac6e
|
adjusting style (mainly long lines an "== None")
|
2016-03-02 10:52:24 +01:00 |
Martin Diehl
|
c1dd5febd5
|
some more scripts passed
|
2016-03-01 22:27:21 +01:00 |
Martin Diehl
|
974b8cde41
|
some more syntax improvements
|
2016-03-01 22:13:57 +01:00 |
Martin Diehl
|
043f2faeb3
|
line too long
|
2016-03-01 21:59:59 +01:00 |
Martin Diehl
|
98476ea29c
|
more improved scripts
|
2016-03-01 21:35:59 +01:00 |
Martin Diehl
|
9cfc27d295
|
line too long (132 lines max code, like Fortran, 159 including comments, Python standard)
|
2016-03-01 21:18:32 +01:00 |
Martin Diehl
|
80dc23d93d
|
following "prospector -t pep8 -t pyflakes -t dodgy -t profile-validator -t pep257"
|
2016-03-01 21:11:43 +01:00 |
Martin Diehl
|
e55d0ae3ca
|
further attemps to make it conform with best python practice
|
2016-03-01 20:44:43 +01:00 |
Martin Diehl
|
6eb170bc07
|
still struggling with prospector
|
2016-03-01 19:37:31 +01:00 |
Martin Diehl
|
3b33d320b1
|
getting pyflakes to ignore
|
2016-03-01 19:06:00 +01:00 |
Martin Diehl
|
2a50c6bf86
|
using prospector --tool=dodgy --tool=pyflakes -M to find python flaws
|
2016-03-01 18:25:14 +01:00 |
Martin Diehl
|
7c9d344601
|
python files now report their version depending on VERSION file in $DAMASK_ROOT
|
2016-01-27 17:06:00 +00:00 |
Martin Diehl
|
f693ead989
|
adding material.config to header
|
2015-12-28 16:36:26 +00:00 |
Martin Diehl
|
c710709b1a
|
example Makefile typically does not work, deleted
|
2015-12-15 14:34:03 +00:00 |
Martin Diehl
|
19ddbc9b21
|
fixed typo and simplified
|
2015-12-15 06:16:47 +00:00 |
Philip Eisenlohr
|
6de6b8b87f
|
fixed wrong variable name when using pre-existing microstructures from table.
added switch to skip effort for tolerance == 0.
|
2015-12-09 14:13:19 +00:00 |
Martin Diehl
|
d76fcb4be8
|
was giving wrong results
|
2015-12-05 21:34:39 +00:00 |
Martin Diehl
|
7eb7a4e8cd
|
changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered
|
2015-12-04 22:34:19 +00:00 |
Philip Eisenlohr
|
35202494c2
|
fixed issue caused by using -r twice as option label.
|
2015-12-04 04:33:23 +00:00 |
Philip Eisenlohr
|
784c78a3b0
|
removed defunct option to output labels as column vector.
|
2015-12-04 04:31:53 +00:00 |
Philip Eisenlohr
|
937634d703
|
added group shuffling (i.e. exchanging unique values)
|
2015-12-04 01:17:45 +00:00 |
Philip Eisenlohr
|
08014a7030
|
small polishing
|
2015-12-04 01:16:49 +00:00 |
Philip Eisenlohr
|
3fb1f02382
|
forgot $Id$ and line endings…
|
2015-12-03 22:33:38 +00:00 |
Philip Eisenlohr
|
2efc602854
|
Smooth geometry by selecting most frequent microstructure index within given stencil at each location.
|
2015-12-03 22:32:28 +00:00 |
Philip Eisenlohr
|
8f5c3b9ad7
|
small polishing.
|
2015-12-02 23:13:10 +00:00 |
Philip Eisenlohr
|
55b33e5597
|
added option “inplace” to directly modify VTK file instead of creating copy_added.
|
2015-12-02 23:10:14 +00:00 |
Martin Diehl
|
f49091c952
|
addDeformedConfiguration without core module
|
2015-12-02 20:53:02 +00:00 |
Martin Diehl
|
6ecbd3ae56
|
makefile had problems with static flag, mentat spectral Box was still using table.croak
|
2015-12-02 20:02:19 +00:00 |
Martin Diehl
|
0ffcb7fdaf
|
cleaning
|
2015-12-01 16:37:20 +00:00 |
Martin Diehl
|
f61f87e6d0
|
updated reference results (visual impression much better now) for geom_fromTable and silenced verbose debug output per default since it's causing problems when piping to file
|
2015-11-30 16:22:59 +00:00 |
Philip Eisenlohr
|
cee9a345b7
|
added option to label microstructure.
updated to most recent asciitable/damask.util infrastructure.
|
2015-11-20 16:30:55 +00:00 |
Philip Eisenlohr
|
0db4a7fad0
|
added debug messages.
added background message for estimated time (+ grain info).
fixed functionality—finally works as intended (lump orientations within threshold).
|
2015-11-20 16:27:57 +00:00 |
Martin Diehl
|
40c2a5dd6d
|
differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though
|
2015-11-20 15:58:32 +00:00 |
Martin Diehl
|
24382ed827
|
unified options to enable automated parsing for documentation
|
2015-11-16 10:52:56 +00:00 |
Martin Diehl
|
1336c8d0e6
|
now using default 2D output for geometry
|
2015-11-16 09:54:39 +00:00 |
Martin Diehl
|
302178ebb4
|
some trouble since clean was already in PETSc rules
|
2015-11-14 09:47:18 +00:00 |
Philip Eisenlohr
|
4c51c15795
|
changed option to —coordinates.
gracefully extend points to be 3D.
|
2015-11-14 01:52:31 +00:00 |
Martin Diehl
|
4b85941a94
|
some comments
|
2015-11-11 19:51:34 +00:00 |
Martin Diehl
|
4ca566efa8
|
geom_rotate: rotates a geometry
|
2015-11-11 19:51:17 +00:00 |
Philip Eisenlohr
|
2c9f9981e2
|
polishing of addRectiliearGridData.
subsumed functionality of addVoxelgridData into it.
|
2015-11-10 01:49:32 +00:00 |
Philip Eisenlohr
|
434bf2413e
|
simplified if—else with a = b if c else d
|
2015-11-10 01:35:26 +00:00 |
Philip Eisenlohr
|
ccf7530121
|
added output selection “rodrigues”
|
2015-11-10 01:34:10 +00:00 |
Chen Zhang
|
fe1dbf2ea0
|
output file name now contains both position and mode.
e.g. ${prefix}_ipinitialcoord(point).vtr
|
2015-11-03 21:44:36 +00:00 |
Philip Eisenlohr
|
ad06fc1a77
|
fixed buggy mapIncremental behavior for anything else than averaging (the standard case luckily…)
|
2015-10-27 20:16:24 +00:00 |
Martin Diehl
|
072be9c1bb
|
help now working if no mentat release present.
improved style
|
2015-10-26 19:34:44 +00:00 |
Martin Diehl
|
41f1994569
|
new style and test for grain growth
|
2015-10-26 17:59:36 +00:00 |
Martin Diehl
|
ebf20f2ebc
|
unified style and other minor improvements
|
2015-10-15 19:51:27 +00:00 |
Martin Diehl
|
e72ae63873
|
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
|
2015-10-14 21:35:56 +00:00 |
Martin Diehl
|
dd0167821f
|
corrected reporting and convergence check
|
2015-10-14 20:33:22 +00:00 |
Martin Diehl
|
bdfd9c69bb
|
simplified dimension handling
|
2015-10-14 18:45:33 +00:00 |
Martin Diehl
|
46564d3df8
|
commenting and introducing functions for regulary used code
|
2015-10-14 18:40:02 +00:00 |
Martin Diehl
|
180d4625c1
|
trying to simplify
|
2015-10-13 21:00:12 +00:00 |
Martin Diehl
|
8fac635c15
|
made hybridIA stuff working again
|
2015-10-13 17:02:07 +00:00 |
Martin Diehl
|
f1482a2af4
|
fixed buggy behavior in case of non unit-sized geometry
|
2015-10-12 18:10:26 +00:00 |
Aritra Chakraborty
|
723f135177
|
can now handle tiling of values (scalar [string,number] spread out to vector and such)
|
2015-10-09 14:22:41 +00:00 |
Philip Eisenlohr
|
196afb9b31
|
adopted change in named argument (strict -> SST) for disorientation
|
2015-10-09 13:06:51 +00:00 |
Martin Diehl
|
fc9d290339
|
unified structure and names, added test for vtk{point/voxel}cloud
|
2015-10-09 11:24:26 +00:00 |
Martin Diehl
|
8fe443d068
|
clearer naming
|
2015-10-09 06:26:18 +00:00 |
Martin Diehl
|
61090c955d
|
removed code doubling
|
2015-10-09 05:51:58 +00:00 |
Martin Diehl
|
6d74cbf374
|
simpliefied scripts for vtk generation and introduce simple test to check if they run
|
2015-10-08 21:30:33 +00:00 |
Martin Diehl
|
fd04e0763b
|
legacy code geom... can be achieved by combining voronoi tesselation and geom_rescale, for ipfs can be plotted from ascii table with matlab
|
2015-10-08 17:41:35 +00:00 |
Martin Diehl
|
127c03c525
|
unneeded module
|
2015-10-06 19:29:32 +00:00 |
Martin Diehl
|
1bd8167445
|
requires core module and is most likely not used.
When needed, a Complete, lean redesign is simpler than updating to current coding style
|
2015-10-06 18:11:58 +00:00 |
Martin Diehl
|
f014cef043
|
improved performance for non-weighted Voronoi Tessellation
|
2015-10-06 18:03:06 +00:00 |
Aritra Chakraborty
|
22048cb546
|
fixed a bug
|
2015-10-02 01:59:59 +00:00 |
Philip Eisenlohr
|
2c6a6f6530
|
fixed bug.
introduced possibility for poke bounding box in all dimensions.
|
2015-10-02 00:21:23 +00:00 |
Philip Eisenlohr
|
a2a7664e8e
|
default to 0–1 for z range
|
2015-09-29 22:35:57 +00:00 |
Philip Eisenlohr
|
21bcafe3e4
|
seeds coordinates now rescaled to proper box size.
|
2015-09-29 22:27:46 +00:00 |
Philip Eisenlohr
|
863fe5ddf0
|
needs modules “math” and “random” for user-supplied conditions…
(do not remove through pyflakes—shall we introduce dummy code to keep the modules “active”?)
|
2015-09-29 22:27:07 +00:00 |
Harsha Phukan
|
202ee00049
|
Eliminated redundant searches for similar orientations in neighboring points…speeds up script by 2 orders of magnitude
|
2015-09-28 19:03:24 +00:00 |
Martin Diehl
|
55dc2b419a
|
warn if unexpected file size is encoutered
|
2015-09-24 17:07:27 +00:00 |
Martin Diehl
|
4ead24a134
|
more tests
|
2015-09-24 16:52:58 +00:00 |
Martin Diehl
|
f4c53e0be8
|
removed warnings by pyflakes, implemented new croak functionality
|
2015-09-24 15:34:27 +00:00 |