4acfc73fa1
Merge branch 'Python3' into development
2016-10-31 11:28:40 -04:00
94fcc9ad24
fixed language and syntax
2016-10-31 10:40:58 -04:00
8eb93a3274
python scripts now pack "a a-1 a-2 ... a-n" to "a to a-n"
2016-10-29 10:49:40 +02:00
aa3dc56949
fixed handling of last line (bug fix for second but last commit)
2016-10-29 10:30:42 +02:00
7e6e2e1c84
not using reserverd keyword "type"
2016-10-29 10:28:34 +02:00
1a56ad7a72
no logic change yet
2016-10-29 10:21:00 +02:00
6d9d25ea43
python 3 compatible and modernized
2016-10-28 15:40:17 +02:00
e43e37aae1
new style option setting
2016-10-27 23:06:17 +02:00
99dc75c2fd
proper capitalization
2016-10-25 21:53:32 +02:00
a62ab3b5d4
fixes (mainly tuple arguments for functions and lambda functions)
2016-10-25 21:52:51 +02:00
8a94f55a2e
python 3 compatibility
2016-10-25 06:44:12 +02:00
a84e7310f5
fixed prospector hints
2016-10-24 20:30:51 +02:00
96349ebf53
add log to each dataset
2016-10-17 18:24:47 -04:00
703ae3c6d6
add script for adding von Mises equivalent to HDF5 file
2016-10-17 17:29:44 -04:00
4d849219f7
will come back for this later
2016-10-17 16:59:42 -04:00
8e7f0c255b
fix some syntax error
2016-10-17 16:58:04 -04:00
74b29881f3
strain tensor calculation script for HDF5
2016-10-17 16:24:11 -04:00
1a2194f042
remove useless functions
2016-10-17 16:23:21 -04:00
fb1e4f0c39
add IPF color tuple for HDF5 file
2016-10-17 12:24:29 -04:00
b04c5801a5
syntax polish
2016-10-14 14:38:09 -04:00
0a35761636
delete unused module
2016-10-14 14:33:22 -04:00
dfb49c3138
as script for calc Cauchy stress in HDF5
...
no safe net in the script, following 'let-it-fail' design
2016-10-14 14:32:20 -04:00
fd4b495de2
adding interface for addCalc with HDF5
2016-10-14 14:30:46 -04:00
05a3b569fc
adding parallel version of addCalc for H5 table
2016-10-14 12:26:46 -04:00
33de9cf2b9
script for adding data from HDF5 to vtk file
2016-10-14 12:06:59 -04:00
1f01dce862
use 4 space indentation
2016-10-14 12:06:09 -04:00
2f2490e784
remove unused import
2016-10-14 10:48:08 -04:00
e5e2eef375
add script generate vtr file from HDF5
...
following "let-it-fail" design
2016-10-14 10:45:42 -04:00
353b5b6994
avoid doctring as argument
2016-10-14 10:42:03 -04:00
9ac3f564c8
syntax fix
2016-10-13 13:45:25 -04:00
8cdc7c0b10
add xdmf wrapper generator for HDF5
...
Not recommended for large dataset due to potential memory leak currently plaguing Xdmf ilbrary.
2016-10-13 13:41:04 -04:00
ec59dfeec0
do not reshape data
...
since xdmf is not stable right now, there is no need to reshape the data to tie it to the mesh. comment them out for future reference
2016-10-13 13:22:37 -04:00
ace06fd0e1
skip dulplicated columns in ascii table
...
also add a todo list at the top
2016-10-13 11:33:38 -04:00
c311ac47ca
force using rectangular mesh
...
Paraview cannot handle large number of polyvertices using xdmf, forcing a meshed structure to by pass the problem.
2016-10-12 20:20:15 -04:00
ffcfe67c73
remove debug output, fix name handling error
2016-10-10 09:46:11 -04:00
7278605004
fix naming error
2016-10-09 19:13:44 -04:00
6450cb3003
fix syntax error
2016-10-09 19:12:45 -04:00
6eb111dc7c
add script convert ASCII table to HDF5
...
using H5Table
2016-10-09 19:01:38 -04:00
4e8bd83d4b
syntax error fix
2016-10-07 15:32:10 -04:00
5951b45259
only grain file type 1 seems to make sense (type 2 has average values).
...
For type one, data is fixed i.e. flexible labels are not useful
2016-10-06 15:22:05 +02:00
de88bebe99
handling defaults correctly for extend option
2016-10-06 12:14:07 +02:00
f78f89fb12
periodic microstructure needs to be updated per iteration (N).
...
now calling script twice gives the same result as one call with N=2.
results for N=1 are not affected
2016-10-05 15:24:37 +02:00
3abf0bc2d3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-27 06:22:52 +02:00
0ffd74d536
correct flag "data" for updated vtk_addRectilinearGridData
2016-09-26 16:32:39 -04:00
1d06e82700
grain circumference identification
...
fixed right most path selection criteria for grain circumference
2016-09-26 16:30:50 -04:00
5345b42d71
improved robustness against faulty RCB data
...
deals gracefully with duplicate segments, new option to export cleaned up RCB
2016-09-25 21:18:53 -04:00
fb23c49b41
should be executable
2016-09-24 15:58:13 +02:00
e20623845a
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-22 16:14:07 +02:00
0f09a66b62
pyflake was complaining
2016-09-22 15:36:28 +02:00
f8901220ab
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-09-22 15:34:28 +02:00
25103205a8
bug fix, adjust to options change of vtk_addXXXData
2016-09-21 22:01:16 +02:00
0f636bf6c3
not needed
2016-09-21 17:47:37 +02:00
4cd8fe7f36
indices should be integers (visible warning)
2016-09-21 17:45:23 +02:00
43457dcfc5
flexible selection of axes
2016-09-21 17:43:07 +02:00
4ccc0cf5a1
tool to mirror geometries (enforce periodicity on measured data)
2016-09-21 17:06:50 +02:00
1180c8bb88
Fix calculation of interfaceEnergy
2016-09-15 17:36:43 -04:00
f3308dbef6
replace scalar/vector option with data
...
vtk does not care 1D data array length
2016-09-14 19:59:26 -04:00
38d1a2c254
Merged branch development into development
2016-09-14 19:50:18 -04:00
eb69d6f4f1
Merged branch development into development
2016-09-14 19:42:15 -04:00
59c1eee16b
added possibility to restrict seed coordinates to fraction of unit box
2016-09-14 19:42:05 -04:00
ae16ccae61
need to use deep copy when converting np array to vtk array
...
for batch array conversion, it is necessary to use the deep copy to ensure numpy_support.numpy_to_vtk works as it should.
2016-09-14 15:06:00 -04:00
53d2df6058
vector support 1D vector with arbitrary lenght
...
simple hack to bypass the size check for vectors since vtk does not care the vector size.
2016-09-14 12:37:07 -04:00
804931db9e
force type cast index to int for numpy array
...
Force type casting indices into int array to avoid warning:
VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future
For more info, see http://stackoverflow.com/questions/20084218/deprecation-warning-in-scikit-learn-svmlight-format-loader
2016-09-12 19:09:48 -04:00
77729f39e3
commenting last commit
2016-09-11 14:41:48 +02:00
06405bc251
fixed coordinate system convention to be right handed always instead of random left and right handed assignment
2016-09-10 16:39:25 -04:00
2daad7542e
added option for periodic averaging
2016-09-10 16:39:25 -04:00
ee322be870
use np.histogram2d, fixed list.append bug when using weight column
2016-09-09 16:17:00 -04:00
8c4767d58c
syntax fix
2016-09-09 07:28:54 -04:00
017c08a7bb
syntax fix
2016-09-09 07:28:31 -04:00
da538fbce9
speed up of VTK data transformation
2016-09-08 18:05:49 -04:00
c05307a273
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-03 14:35:53 +02:00
a2f3839ca8
add missing numpy import
2016-09-02 14:37:15 -04:00
d9077805e4
Forced symetric tensor when adding tensor to vtk
...
VTK addTensor by default using the lower triangle to populate its tensor object. Enforcing the tensor to be symmetric to avoid necessary confusion when adding data (most stress/strain tensor should symmetric by default, so it should not affect the results)
2016-09-02 09:30:49 -04:00
20d1164e5d
add tensor support for vtk_addRectlinearGridData
2016-09-01 16:57:29 -04:00
6db0a42eae
addvtk data now support tensor type (9 components)
2016-09-01 12:47:26 -04:00
4b02a55f4d
explicit type casting from boolean to int
2016-08-30 16:08:47 -04:00
891ac4d585
fixed comma syntax error
2016-08-25 12:17:27 -04:00
55d6adf1b8
renamed to reflect more general nature of script
2016-08-25 12:15:41 -04:00
85abf84186
generalized to user-specified mapping function instead of hardwired avg
2016-08-25 12:15:03 -04:00
f984f1ebea
enable floating point data and corrected counting of microstructures
2016-08-24 16:05:50 -04:00
7710f4d444
hybridIA (stand alone script and DAMASK) need standard ASCII table
...
export of TSL OIM is similar to standard ASCII table, simply add correct header
including labels
2016-08-23 17:21:17 +02:00
c2b1499d84
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-08-16 12:46:03 +02:00
64ac05fc26
removed left-over debug output
2016-08-11 14:24:40 -04:00
600731b15c
modernized, gracefully add NaN for out-of-bounds mapping
2016-08-11 14:23:29 -04:00
d239cab3ae
corrected help
2016-08-11 13:48:15 +02:00
a0567e8642
added FeatureID and right coordniates to table
2016-08-04 11:11:24 +02:00
ccc0ac35ac
copied from ang_toTable
2016-08-02 11:30:36 +02:00
6c82641713
added defaults (bugfix)
2016-08-01 16:43:14 +02:00
fa3387486d
clarified meaning of possible (global) rotation (lab/crystal frame)
2016-07-31 19:35:10 -04:00
79ff040426
sorting and clarification of help, shortening of output labels
2016-07-30 15:07:44 -04:00
23a57ec78f
reinstalled "NOQA" keyword for "import math"
2016-07-30 12:52:49 -04:00
ab3415d44e
polishing and rearrangement of code snippets
2016-07-30 12:46:00 -04:00
c3650a1b00
shebang got reverted
2016-07-30 08:20:57 +02:00
6a80c71c0b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-07-29 20:42:38 -04:00
304fdf1ebe
can deal with "veterans" and "newbies" meaning over ride existing with new
2016-07-29 20:41:15 -04:00
b39915afe1
Merged branch development into development
2016-07-29 17:51:16 -04:00
0bbf54e0e4
switched to string.format() method
2016-07-29 17:49:29 -04:00
afff0b8614
fixed STDOUT error
...
no files on command line translate to "filename" being empty list. Cannot test for filename[0] then...
2016-07-29 17:48:40 -04:00
2a0be6d232
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-27 08:57:13 +02:00
1195593233
some casting was needed, corrected header
2016-07-25 19:39:09 +02:00
4d01e826c5
fixed typo in usage msg
2016-07-25 00:46:11 -04:00
99963ca1dd
Merged branch development into development
2016-07-24 19:19:03 -04:00
6f527b2af8
fixed upperCase typo in vtk_addPointcloudData call
2016-07-24 19:18:48 -04:00
03bb0b8a98
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-18 19:36:47 +02:00
cd63a92733
using python 2.7 has shebang will also work on mac without symlink
...
unless someone uses the 6 year old python 2.6, this should be save
2016-07-18 19:35:35 +02:00
0a2d5e4c2a
add missing newline to header for postResult
2016-07-18 12:29:12 -04:00
325e153d3d
import of string not needed
2016-07-18 11:22:53 +02:00
e3f83b6d66
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-18 11:22:12 +02:00
1b30b186f4
rootRelation keyword was still used
2016-07-18 06:17:22 +02:00
0c2b7782d4
reporting correct ID
2016-07-17 18:18:57 +02:00
40414c767c
like ang_toTable (not sure if both are needed anyway)
2016-07-15 21:03:10 +02:00
ce7cd36bf5
better be done with load case rotation
2016-07-15 20:23:20 +02:00
e8153ad196
corrected name
2016-07-15 15:48:53 +02:00
c792b73b4e
simplified
2016-07-15 14:52:48 +02:00
7d84b99710
bugfix: axis out of bounds for np.repeat, np.tile seems to be ok @Philip: pls check. autodoc friendly help
2016-07-15 10:34:17 +02:00
9e8adf731b
fixed buggy a.all() call
...
removed squaring of Laguerre weights (no clue why we considered this a good idea in the first place)
2016-07-07 15:23:01 -04:00
3ada327d3f
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-07-04 21:43:33 +02:00
745c012088
fully adopted code from addDisplacement
2016-06-29 20:09:42 +02:00
f04b737e4c
Merge remote-tracking branch 'origin/development' into NoCoreModule
2016-06-29 16:11:07 +02:00
2c8427eb2a
seems to work now
2016-06-29 12:35:50 +02:00
9bf8b6221c
fixed fluct displacement
2016-06-29 12:11:07 +02:00
a64388355a
simplified
2016-06-29 11:02:49 +02:00
9ea6d3afd7
simplified FFT statements
2016-06-29 10:58:15 +02:00
cd5eddb444
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-06-28 22:44:23 +02:00
af2404f0f8
no access out of bounds anymore (but incorrect results)
2016-06-27 23:27:30 +02:00
8307a4a9ab
trying to get the last things work without the core module
2016-06-27 19:38:12 +02:00
259ee072a6
Merge branch 'development' into NoCoreModule
2016-06-27 15:35:46 +02:00
b40cbd68bb
"-"sign caused reversed deformation mode
2016-06-27 15:19:02 +02:00
5fb5edc2ed
should be executable
2016-06-24 07:31:46 +02:00
aa9a8b21c7
lables is now a method, not an attribute
2016-05-18 18:31:54 +02:00
be99018ce3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-05-18 18:28:57 +02:00
a7c15b4c00
avoided quoting of "N of x" and "a to b".
2016-05-17 11:29:31 -04:00
12affbd240
simplified and corrected
2016-05-17 11:23:57 -04:00
a8765a963d
more fixing of old .labels use
2016-05-17 11:12:26 -04:00
66e06cf61f
shebang for python2 got lost
2016-05-17 16:41:38 +02:00
9103ee544b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-05-17 09:52:18 -04:00
fa3d8fa460
adopted description/simplified
2016-05-17 11:05:50 +02:00
8d6c601a45
fixed python flake complaints.
2016-05-16 20:17:17 -04:00
8e01247597
merged functionality of fillTable (change existing column values) into addCalculation. If labels already exist, they are altered. Otherwise, new columns are appended.
2016-05-16 20:06:13 -04:00
515b8ee457
reworked use of "labels" property to proper methods for access.
2016-05-16 19:55:06 -04:00
49b02ac1f2
label name inline with current scheme
2016-05-13 22:46:03 +02:00
fa5ebdd46b
added correct metavar
2016-05-13 09:43:56 +02:00
61c93bdbf4
adjusted help message for automated documentation
2016-05-12 08:54:34 +02:00
ba6889a54f
removed debug statement
2016-05-11 10:04:55 -04:00
0da55113f9
not needed anymore
2016-05-11 11:44:24 +02:00
a21e8cd863
usind explicitly python2 to run in environments with python 3 as default
2016-05-11 11:01:39 +02:00
5089d86b3d
sorting labels are now optional. uses existing labels (from left to right) for sorting if none specified.
2016-04-28 20:28:45 -04:00
d3a7ceff15
fixed serious bug regarding wrong reshaping order (was 'C' now 'F') of 3dim to 1dim and back.
2016-04-28 13:25:46 -04:00
426658eb36
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-27 09:28:51 -04:00
b3e9877058
changed from "coords" to "pos"
...
remind user about (creating a new) nodal output file
2016-04-27 09:28:43 -04:00
d497503411
renamed options.coords/options.coordinates consistently to options.pos
2016-04-26 22:49:58 +02:00
0f0ca8cd71
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-25 10:24:30 -05:00
36f41341ec
Merge branch 'SimplifiedvtkRectilinear' into development
2016-04-25 10:23:50 -05:00
c67fbe7653
distinguished between singular and plural in remark
2016-04-25 10:23:08 -05:00
7ed4ce859a
remove obsolete geom_frombarucentric script for microstructure reconstruction
2016-04-25 09:24:05 -04:00
c30c7714ad
hickup, probably from merge
2016-04-25 14:11:27 +02:00
26e5f97ff3
missing comma
2016-04-25 13:22:34 +02:00
2eb7ad7432
polishing
2016-04-25 12:59:15 +02:00
7ce208019c
Merge branch 'development' into miscImprovements
2016-04-25 12:36:02 +02:00
469ec4b00e
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-25 12:33:06 +02:00
d6002bdb10
removed remaining argument line
2016-04-25 09:08:24 +02:00
e8afd57536
seems to work
2016-04-25 08:40:36 +02:00
26f437b507
fixed pointcloud issues for vtk < 7.0 (going back to old, non-XML format)
2016-04-25 08:28:00 +02:00
34aa11f197
finishing half-done renaming
2016-04-24 22:50:41 +02:00
db7c4bba45
same functionality can be accomplished with existing scripts.
...
addEuclideanDistance + geom_fromTable
(reLabel) + specify grid and size
2016-04-24 14:18:29 -05:00
2daa162da2
renamed option "position" to "seedposition". now uses util.report_geom.
2016-04-24 14:12:10 -05:00
4b7b473d2b
superseded by more modern vtk_* machinery
2016-04-24 13:46:25 -05:00
478acb96ce
exchanged by more modern vtk_* machinery...
2016-04-24 13:38:36 -05:00
88548cbb87
accidentally copied wrong writerType. now rectilinear...
2016-04-24 13:22:06 -05:00
8c0b0351cd
renamed "coordinates" option to "position". small additional polishing.
2016-04-24 13:12:18 -05:00
10e31e489a
new script to add arbitrary lines to ASCIItable header
2016-04-24 13:10:25 -05:00
b2b5f6b68c
removed useless check for croaking
2016-04-24 13:00:57 -05:00
219d489df4
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-24 12:35:17 -05:00
94933514a1
removed "legacy" option. STDOUT reports most modern format available (ASCII XML for point cloud, VTK for rectilinear grid).
2016-04-24 12:34:01 -05:00
bd23f979f4
also not needed anymore
2016-04-24 19:27:19 +02:00
33391fcf5b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-24 18:58:32 +02:00
ac9a9cb6ac
scripts deemed useless
2016-04-24 18:56:13 +02:00
f1b5d40bac
now uses util.report_geometry. some additional modernizing on the fly.
2016-04-24 11:24:00 -05:00
c37c0a8ed9
added awareness for Laguerre weights
2016-04-24 11:22:54 -05:00
f42c316aa2
updated help
2016-04-24 10:14:16 -05:00
9e5a8d2391
modernized string formatting, updated help strings, using label_indexrange for data-slicing.
2016-04-24 10:09:28 -05:00
648c2dd1d3
Only read position coordinates for grid detection. Needs data_rewind before writing of (condensed due to readArray) head.
2016-04-24 09:22:07 -05:00
3b53d1bc82
polished option help messages
2016-04-22 14:20:36 -05:00
dffa119724
Added explicit option to force geom input format.
...
Added option to output legacy format.
Possible bug in VTK presently prevents XML output to STDOUT... (Have filed issue to VTK developers.)
2016-04-22 14:02:07 -05:00
57acaba63e
Missed out on putting the if..else statement as a bracketed group in a former commit. Next try of getting rid of {True: a,False: b}[choice] style...
2016-04-22 13:19:32 -05:00
382727f2d6
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-22 13:13:42 -05:00
a1927f84c4
renamed "coordinates" option to "position".
...
added explicit choice to write out as legacy format.
2016-04-22 13:09:23 -05:00
a3da663931
piping was broken
2016-04-22 17:59:50 +02:00
c57c76085f
missing labels
2016-04-21 15:41:35 +02:00
28423d4b45
increment information got lost
2016-04-21 11:31:02 +02:00
8ec9243016
new label name
2016-04-21 11:06:39 +02:00
13e214fe18
added support for legacy VTK format
2016-04-18 15:08:29 -04:00
0bc7f36ee5
added (transparent) capability to deal with geom files.
2016-04-18 14:49:11 -04:00
24d029c7ed
speed up (x 5 to 10) identification of most frequent microstructure index
2016-04-15 18:54:09 -04:00
81f6530f52
changed default label of coordinates to "pos"
2016-04-15 18:27:23 -04:00
7567aae7c0
now deals with 1D, 2D, 3D. speed up of grid detection. "pos" as default coordinate label.
2016-04-15 18:25:56 -04:00
8ac40ced5a
coordinates of nodal or cell-centered values are always labelled "pos"
2016-04-15 18:23:35 -04:00
cbe9afb2b3
removed --mode option. script figures on its own.
2016-04-15 14:06:01 -04:00
3474800db1
switched coordinates default from "ipinitialcoords" (ugh) to "pos"
2016-04-15 14:04:10 -04:00
f040842ed4
superseded by addDisplacements
2016-04-15 07:41:55 -04:00
01ba11448c
small polishing of remark output regarding <3D vectors
2016-04-15 07:41:24 -04:00
91753d5322
more style related changes
2016-04-15 00:35:21 +02:00
5682d8f627
also not needed
2016-04-15 00:11:03 +02:00
6aa6b418ea
not needed (Philip has different names)
2016-04-15 00:08:01 +02:00
573d10f1e1
Merge branch 'development' into NoCoreModule
2016-04-15 00:05:38 +02:00
dbfd107b48
Add deformed configuration of given initial coordinates.
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Operates on periodic three-dimensional x,y,z-ordered data sets.
Replaces 3Dvisualize..!
2016-04-14 17:53:48 -04:00
170d377092
much improved algorithm to speed up grain identification.
2016-04-13 19:36:24 -04:00
1994b5a4c1
removed debug messages
2016-04-13 19:29:04 -04:00
ea0bc80af9
modernized to reflect rectilinearGrid processing. Now supports vector data and in-place adding.
2016-04-13 18:03:40 -04:00
0b09ce31db
changed coordinate option to be consistent with rectilinearGrid.
2016-04-13 17:49:48 -04:00
feae2164fc
polishing and now explicitly closing input table.
2016-04-13 17:48:49 -04:00
6e2ca7d595
Removed hard requirement of 3D dataset. Fills in necessary dimensions.
2016-04-13 17:48:17 -04:00
70afa462b2
should work now with odd resolution as well
2016-04-11 20:25:24 +02:00
18f18aa4b9
detabbing
2016-04-11 19:55:55 +02:00
82063494fd
adopted to new json format of paraview
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introduced "standard" colormaps for stress, strain, and orientation
file is now implicit the first argument without key (in line with other scripts)
2016-04-11 19:47:07 +02:00
f483c6a404
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-11 16:06:00 +02:00
d278d86f9d
long line
2016-04-11 13:24:43 +02:00
b1d714581c
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-10 15:40:52 +02:00
b0496f20ca
grouped command line options.
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removed functionality to add random second phase.
2016-04-08 17:47:02 -04:00
2354cd609a
small polishing of help.
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added option to change output number format.
2016-04-08 17:46:06 -04:00
3e6d2710a3
added option to report probability density
2016-04-05 16:18:34 -04:00
e9ec497da6
fixed bug preventing files specified with full path to be treated properly
2016-04-05 16:17:55 -04:00
fcddf9345e
added option for non-uniform weights
2016-03-27 17:54:49 -04:00
7c72ede29d
now works properly for labels specified as index (instead of string)
2016-03-27 16:29:45 -04:00
0d93a47c71
Generate histogram of N bins in given data range.
2016-03-27 13:34:19 -04:00
97314619cc
corrections
2016-03-26 19:59:05 +01:00
7423c1a06a
not needed anymore
2016-03-24 18:47:11 +01:00
04d2148e61
will replace geom_fromAng (in combination with geom_fromTable)
2016-03-24 17:55:15 +01:00
ea28bc8f06
restored script for calculation of nodal positions
2016-03-24 16:19:49 +01:00
8b89063113
less core module
2016-03-24 14:19:00 +01:00
60a3ac5b04
copied fortran code
2016-03-24 12:35:33 +01:00
022b089fa7
cleaned core module related stuff
2016-03-24 11:49:23 +01:00
4592db8dfb
added python based geometry reconstruction
2016-03-24 10:37:15 +01:00
809f03bef5
new printing for python3 and corrected help
2016-03-23 17:02:51 +01:00
466178cfc7
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-23 11:06:11 +01:00
900d2f7bf2
output follows damask.croak syntax
2016-03-23 11:05:36 +01:00
0840a5f42e
modernized orientation treatment and adopted slip systems from lattice.f90
2016-03-22 20:52:02 -04:00
fafedd5cd6
Merge branch 'LargeFiles' into development
2016-03-22 15:45:42 +01:00
a41cd3df40
added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid.
2016-03-20 16:46:35 -04:00
6865987ea7
restored option to output microstructure indices as one-dimensional list (not clear why that got lost!)
2016-03-20 15:01:47 -04:00
e39441f36b
corrected usage message to tell about string comparison in filter condition
2016-03-17 19:02:30 -04:00
0f78f1c747
possibility to treat floating point numbers as microstructure indices
2016-03-17 18:09:22 -04:00
36c703ecd3
shortened excessively long lines
2016-03-16 15:20:31 -04:00
3a267dc7ff
FFT-based gradient calculation of scalar or vector field data (sibling of addCurl and addDivergence)
2016-03-16 15:02:38 -04:00
ce26ad06da
polishing and introduction of locally derived grid in FFT subroutine
2016-03-16 15:01:22 -04:00
6197e839c9
fixed missing file extension when adding in-place
2016-03-15 14:52:10 -04:00
f857353e16
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-11 12:49:47 +01:00
b0dedb8cbd
=addOrientation can do the same (and more)
2016-03-09 19:02:28 +01:00
e9338200eb
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-09 12:28:52 -05:00
b933359f17
clarified text of error message complaining about wrong input dimension
2016-03-09 12:28:36 -05:00
4dfd59a9e2
output complete microstructure and texture info instead of limiting to grainIDs used in geometry
2016-03-07 22:15:40 -05:00
f13ba71f6e
fixed typo
2016-03-04 17:24:13 +01:00
48233d2767
missing variable
2016-03-03 14:58:04 +01:00
a51f2a29f6
cleaning
2016-03-03 14:53:55 +01:00
76a0a93c42
removed unneeded variables, fixed docstrings. missing variable jc in Barlat1989 from 46c33b0
2016-03-03 14:52:47 +01:00
3ff3bb1a5b
pre processing finished
2016-03-03 14:44:51 +01:00
93d7643875
no long lines anymore and prospector is also happy
2016-03-03 14:44:29 +01:00
9fa49b8584
vtk files, mainly removed from vtk import *
2016-03-02 13:52:33 +01:00
f7fedc4744
next bunch of accepted scripts
2016-03-02 13:50:57 +01:00
3ed3073eff
more...
2016-03-02 11:29:07 +01:00
e89923d6d3
next round
2016-03-02 11:11:20 +01:00
5d7e138a9b
long line
2016-03-02 10:55:21 +01:00
f77de7ac6e
adjusting style (mainly long lines an "== None")
2016-03-02 10:52:24 +01:00
c1dd5febd5
some more scripts passed
2016-03-01 22:27:21 +01:00
974b8cde41
some more syntax improvements
2016-03-01 22:13:57 +01:00
043f2faeb3
line too long
2016-03-01 21:59:59 +01:00
98476ea29c
more improved scripts
2016-03-01 21:35:59 +01:00
9cfc27d295
line too long (132 lines max code, like Fortran, 159 including comments, Python standard)
2016-03-01 21:18:32 +01:00
80dc23d93d
following "prospector -t pep8 -t pyflakes -t dodgy -t profile-validator -t pep257"
2016-03-01 21:11:43 +01:00
e55d0ae3ca
further attemps to make it conform with best python practice
2016-03-01 20:44:43 +01:00
6eb170bc07
still struggling with prospector
2016-03-01 19:37:31 +01:00
3b33d320b1
getting pyflakes to ignore
2016-03-01 19:06:00 +01:00
2a50c6bf86
using prospector --tool=dodgy --tool=pyflakes -M to find python flaws
2016-03-01 18:25:14 +01:00
7c9d344601
python files now report their version depending on VERSION file in $DAMASK_ROOT
2016-01-27 17:06:00 +00:00
f693ead989
adding material.config to header
2015-12-28 16:36:26 +00:00
c710709b1a
example Makefile typically does not work, deleted
2015-12-15 14:34:03 +00:00
19ddbc9b21
fixed typo and simplified
2015-12-15 06:16:47 +00:00
6de6b8b87f
fixed wrong variable name when using pre-existing microstructures from table.
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added switch to skip effort for tolerance == 0.
2015-12-09 14:13:19 +00:00
d76fcb4be8
was giving wrong results
2015-12-05 21:34:39 +00:00
7eb7a4e8cd
changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered
2015-12-04 22:34:19 +00:00
35202494c2
fixed issue caused by using -r twice as option label.
2015-12-04 04:33:23 +00:00
784c78a3b0
removed defunct option to output labels as column vector.
2015-12-04 04:31:53 +00:00
937634d703
added group shuffling (i.e. exchanging unique values)
2015-12-04 01:17:45 +00:00
08014a7030
small polishing
2015-12-04 01:16:49 +00:00
3fb1f02382
forgot $Id$ and line endings…
2015-12-03 22:33:38 +00:00
2efc602854
Smooth geometry by selecting most frequent microstructure index within given stencil at each location.
2015-12-03 22:32:28 +00:00
8f5c3b9ad7
small polishing.
2015-12-02 23:13:10 +00:00
55b33e5597
added option “inplace” to directly modify VTK file instead of creating copy_added.
2015-12-02 23:10:14 +00:00
f49091c952
addDeformedConfiguration without core module
2015-12-02 20:53:02 +00:00
6ecbd3ae56
makefile had problems with static flag, mentat spectral Box was still using table.croak
2015-12-02 20:02:19 +00:00
0ffcb7fdaf
cleaning
2015-12-01 16:37:20 +00:00
f61f87e6d0
updated reference results (visual impression much better now) for geom_fromTable and silenced verbose debug output per default since it's causing problems when piping to file
2015-11-30 16:22:59 +00:00
cee9a345b7
added option to label microstructure.
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updated to most recent asciitable/damask.util infrastructure.
2015-11-20 16:30:55 +00:00
0db4a7fad0
added debug messages.
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added background message for estimated time (+ grain info).
fixed functionality—finally works as intended (lump orientations within threshold).
2015-11-20 16:27:57 +00:00
40c2a5dd6d
differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though
2015-11-20 15:58:32 +00:00
24382ed827
unified options to enable automated parsing for documentation
2015-11-16 10:52:56 +00:00
1336c8d0e6
now using default 2D output for geometry
2015-11-16 09:54:39 +00:00
302178ebb4
some trouble since clean was already in PETSc rules
2015-11-14 09:47:18 +00:00
4c51c15795
changed option to —coordinates.
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gracefully extend points to be 3D.
2015-11-14 01:52:31 +00:00
4b85941a94
some comments
2015-11-11 19:51:34 +00:00
4ca566efa8
geom_rotate: rotates a geometry
2015-11-11 19:51:17 +00:00
2c9f9981e2
polishing of addRectiliearGridData.
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subsumed functionality of addVoxelgridData into it.
2015-11-10 01:49:32 +00:00
434bf2413e
simplified if—else with a = b if c else d
2015-11-10 01:35:26 +00:00
ccf7530121
added output selection “rodrigues”
2015-11-10 01:34:10 +00:00
fe1dbf2ea0
output file name now contains both position and mode.
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e.g. ${prefix}_ipinitialcoord(point).vtr
2015-11-03 21:44:36 +00:00
ad06fc1a77
fixed buggy mapIncremental behavior for anything else than averaging (the standard case luckily…)
2015-10-27 20:16:24 +00:00
072be9c1bb
help now working if no mentat release present.
...
improved style
2015-10-26 19:34:44 +00:00
41f1994569
new style and test for grain growth
2015-10-26 17:59:36 +00:00
ebf20f2ebc
unified style and other minor improvements
2015-10-15 19:51:27 +00:00
e72ae63873
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
2015-10-14 21:35:56 +00:00
dd0167821f
corrected reporting and convergence check
2015-10-14 20:33:22 +00:00
bdfd9c69bb
simplified dimension handling
2015-10-14 18:45:33 +00:00
46564d3df8
commenting and introducing functions for regulary used code
2015-10-14 18:40:02 +00:00
180d4625c1
trying to simplify
2015-10-13 21:00:12 +00:00
8fac635c15
made hybridIA stuff working again
2015-10-13 17:02:07 +00:00
f1482a2af4
fixed buggy behavior in case of non unit-sized geometry
2015-10-12 18:10:26 +00:00
723f135177
can now handle tiling of values (scalar [string,number] spread out to vector and such)
2015-10-09 14:22:41 +00:00
196afb9b31
adopted change in named argument (strict -> SST) for disorientation
2015-10-09 13:06:51 +00:00
fc9d290339
unified structure and names, added test for vtk{point/voxel}cloud
2015-10-09 11:24:26 +00:00
8fe443d068
clearer naming
2015-10-09 06:26:18 +00:00
61090c955d
removed code doubling
2015-10-09 05:51:58 +00:00
6d74cbf374
simpliefied scripts for vtk generation and introduce simple test to check if they run
2015-10-08 21:30:33 +00:00
fd04e0763b
legacy code geom... can be achieved by combining voronoi tesselation and geom_rescale, for ipfs can be plotted from ascii table with matlab
2015-10-08 17:41:35 +00:00
127c03c525
unneeded module
2015-10-06 19:29:32 +00:00
1bd8167445
requires core module and is most likely not used.
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When needed, a Complete, lean redesign is simpler than updating to current coding style
2015-10-06 18:11:58 +00:00
f014cef043
improved performance for non-weighted Voronoi Tessellation
2015-10-06 18:03:06 +00:00
22048cb546
fixed a bug
2015-10-02 01:59:59 +00:00
2c6a6f6530
fixed bug.
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introduced possibility for poke bounding box in all dimensions.
2015-10-02 00:21:23 +00:00
a2a7664e8e
default to 0–1 for z range
2015-09-29 22:35:57 +00:00
21bcafe3e4
seeds coordinates now rescaled to proper box size.
2015-09-29 22:27:46 +00:00
863fe5ddf0
needs modules “math” and “random” for user-supplied conditions…
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(do not remove through pyflakes—shall we introduce dummy code to keep the modules “active”?)
2015-09-29 22:27:07 +00:00
202ee00049
Eliminated redundant searches for similar orientations in neighboring points…speeds up script by 2 orders of magnitude
2015-09-28 19:03:24 +00:00
55dc2b419a
warn if unexpected file size is encoutered
2015-09-24 17:07:27 +00:00
4ead24a134
more tests
2015-09-24 16:52:58 +00:00
f4c53e0be8
removed warnings by pyflakes, implemented new croak functionality
2015-09-24 15:34:27 +00:00
e1157126bc
cleaned with pyflakes, added test for seed generation
2015-09-24 13:21:44 +00:00
f4d4a8e1ec
adopted philips changes for reporting, using pyflakes to clean up
2015-09-24 09:24:42 +00:00
3c901e5549
added option for Euler angle output in degrees
2015-09-23 23:05:28 +00:00
3fa0312087
update usage of asciitable to new interface
2015-09-23 19:20:18 +00:00
42ac7902f7
indents wrong in fortran, seeds_fromDistribution bugfix and using ASCII table facilities
2015-09-20 21:03:10 +00:00
666b438e6a
using ASCII table
2015-09-18 16:12:27 +00:00
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
fb48719283
fixed critical bugs
2015-09-15 19:02:59 +00:00
6f20651250
copy and paste error and new interface for test
2015-09-12 19:29:34 +00:00
6683c1fb73
fixed a bug
2015-09-12 16:34:31 +00:00
0c7f4e690a
fixed reference, still not 100% sure if everything is correct, but apparently the test never run
2015-09-12 16:30:28 +00:00
c53bf02fea
changed back to old behavior
2015-09-11 15:38:03 +00:00
5f9fae1b75
simplified reporting using "emph"
2015-09-11 12:55:43 +00:00
c69e7ec149
switched conjugation to apply to symmetric equivalents instead of incoming quaternion.
...
passing-down of degree option handled directly.
2015-09-09 22:43:56 +00:00
e0d5cef047
Script to merge multiple ASCIItables. Stops at end of shortest one.
2015-09-09 22:22:29 +00:00
Philip Eisenlohr