Commit Graph

578 Commits

Author SHA1 Message Date
Martin Diehl b0263a8aab added possibility to parse options for setup_code.sh and setup_processing.sh + other improvements in setup functionality 2013-02-01 12:21:56 +00:00
Martin Diehl e74b5da19a changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
Mahesh Balasubramaniam 55957dd99e compile_CoreModule.py split seperately from the previous setup_processing.py 2013-01-29 15:33:20 +00:00
Mahesh Balasubramaniam d713ef79d0 a simple shell script that runs compile_CoreModule.py and symLink_Processing.py in the said order 2013-01-29 15:32:43 +00:00
Mahesh Balasubramaniam bd1f8044fb symLink_Processing.py split seperately from the previous setup_processing.py 2013-01-29 15:31:57 +00:00
Philip Eisenlohr 963ff0c3ae added support for tetrahedron element with 4 integration points (Marc ID 127) 2013-01-28 16:25:43 +00:00
Pratheek Shanthraj e691ff1ea1 updated setup_processing and corrected descriptions for new scripts 2013-01-22 09:56:36 +00:00
Pratheek Shanthraj a4abebfcbb some potentially useful postprocessing scripts 2013-01-21 23:15:23 +00:00
Mahesh Balasubramaniam 4af855c755 added perceptualUniformColorMap.py to the list of post-processing files 2013-01-18 17:39:09 +00:00
Mahesh Balasubramaniam 5676330e93 parsing options and file handling for perceptually linear diverging and sequential colormaps 2013-01-18 17:15:30 +00:00
Philip Eisenlohr e51779579e removed (unsupported) "--geom" option. 2013-01-18 13:01:43 +00:00
Philip Eisenlohr c8aaf8f6d4 added $id flags and specified line ending types when missing.
setup script missed ".py" extension for geom_euclideanDistance.
2013-01-18 12:59:26 +00:00
Pratheek Shanthraj 0e93d51fed adopted same algorithm as in addEuclideanDistance 2013-01-18 11:42:27 +00:00
Pratheek Shanthraj 096204cd79 corrected missing file renaming of output 2013-01-18 11:39:53 +00:00
Mahesh Balasubramaniam 7ac7d1a657 new tool for creation of colormaps, now using proper classes 2013-01-15 18:24:10 +00:00
Mahesh Balasubramaniam cd5197556b sequential colormapping with options for desired color and type(increasing or decreasing) is now working 2013-01-04 19:50:39 +00:00
Mahesh Balasubramaniam 820b8eb2c1 put colormap related functions into library, renamed and added scripts for creation of colormaps 2013-01-04 13:57:36 +00:00
Mahesh Balasubramaniam 6ab79d5593 added options for parsing and the colormap. Customized colormap is written out as an xml file importable into paraview. 2013-01-04 12:04:05 +00:00
Mahesh Balasubramaniam 3242361c91 added a minor change to the string expression and the for loop. 2013-01-04 12:01:34 +00:00
Mahesh Balasubramaniam 7157e8f03c changed some of the color-space conversion formulae. 2013-01-04 12:00:10 +00:00
Pratheek Shanthraj a69aaa1315 Use scipy euclidean distance function instead of FMM (runs without skfmm
module installed)
2012-12-19 14:50:45 +00:00
Martin Diehl 260e4191a0 replaced tabs by spaces 2012-12-13 18:15:10 +00:00
Philip Eisenlohr dfb791bcaf only complain about missing Mentat release if needed... 2012-12-12 08:33:42 +00:00
Christoph Kords 34645a7222 write warning about missing Mentat release to stderr instead of stdout 2012-12-12 08:21:59 +00:00
Christoph Kords 93d822aaa1 symmetric colormap always with pure white in the middle 2012-12-11 16:50:34 +00:00
Pratheek Shanthraj 726d1173e5 polishing 2012-12-07 17:46:28 +00:00
Pratheek Shanthraj c4ef2e5925 bug fixes 2012-12-07 17:41:50 +00:00
Pratheek Shanthraj eaf7072bc1 Vectorized checking of neighbourhood for unique microstructure
(faster) 

M    addEuclideanDistance.py
2012-12-07 10:50:34 +00:00
Philip Eisenlohr 89867a198c forgot to adopt addEuclideanDistance into the auto-setup... 2012-12-06 21:51:30 +00:00
Philip Eisenlohr a37250eef4 script to add the Euclidean distance map from boundaries, triple lines, and quadruple points to an ASCIItable of a regular grid.
requires numpy, scipy, and skfmm...
2012-12-06 21:49:49 +00:00
Philip Eisenlohr 2d4cf7da74 conditions can handle string data.
use "#s#label#" format to indicate that column headed by "label" contains strings (not floats)...
2012-12-03 14:29:21 +00:00
Philip Eisenlohr 7d96bb7ce8 Add column(s) containing directional stiffness based on given cubic stiffness values C11, C12, and C44 (in consecutive columns) 2012-12-03 13:10:16 +00:00
Philip Eisenlohr faa5f3c459 corrected severe bug in (non-logarithmic) strain calculations..! 2012-11-30 15:02:25 +00:00
Philip Eisenlohr 72159e867c fixed buggy file handling for multiple input files 2012-11-30 11:03:53 +00:00
Philip Eisenlohr 74f62c891d slightly safer file closing strategy 2012-11-30 08:38:52 +00:00
Philip Eisenlohr 9fb838fd28 changed switch from "sequential" to "column" 2012-11-30 08:29:34 +00:00
Philip Eisenlohr 1bd6bcfe3d script to list info, labels, and/or data of an ASCIItable 2012-11-30 08:26:13 +00:00
Pratheek Shanthraj e498719dcf forgot to add to last commit 2012-11-29 21:57:07 +00:00
Pratheek Shanthraj f63bb747c1 script to calculate the euclidean distance map (shortest distance to a grain boundary) of a given geom description using fast marching method (O(N logN) ops). grain boundary extracted using FD stencil. 2012-11-29 21:53:57 +00:00
Philip Eisenlohr f446d4d87e added wildcard matching ( "?", "*", "[(!)sequence_of_characters]" ) for ASCII table labels 2012-11-29 10:42:13 +00:00
Philip Eisenlohr 05507a6240 removed opening of unused _tmp file 2012-11-27 17:59:56 +00:00
Philip Eisenlohr 255af58434 post processing script to add eigenvalues and eigenvectors to tensorial data in ASCII tables. 2012-11-23 21:49:30 +00:00
Martin Diehl 78c22d8449 corrected label in case of divergence of tensor, now using correct notation for scalar: divFFT(data) instead of 1_divFFT(data) 2012-11-21 10:31:52 +00:00
Martin Diehl b5945ced5e changed counting of rows from pythonic (starting at 0) to human way (starting at 1) 2012-11-20 10:27:09 +00:00
Martin Diehl b988caa6ba added script to add deviatoric and hydrostatic part of a tensor to ASCII table 2012-11-14 10:46:51 +00:00
Martin Diehl c3926efd93 introduced logic to use gfortran as default if ifort is not found 2012-11-13 19:12:00 +00:00
Philip Eisenlohr 1df9be233d changed default threshold to 0.0 2012-11-08 17:08:41 +00:00
Philip Eisenlohr 682a98b704 forgot to alter name of 'geom_fromAng' in setup script... 2012-11-08 16:29:26 +00:00
Philip Eisenlohr 025d6c9048 renamed script to new convention
aligned output behavior to that of fromVoronoiTessellation, i.e., standard output is geom, --config gives associated material.config stud
2012-11-08 15:44:51 +00:00
Philip Eisenlohr af2aa8500d added option to specify crystallite index 2012-11-08 15:43:38 +00:00
Philip Eisenlohr c4c27860b2 renamed script
updated to recent standard in io processing
introduced "primitive" bicontinuous structure in addition to "diamond" and "gyroid"
2012-11-07 16:52:10 +00:00
Philip Eisenlohr 7cf2024be3 fixed buggy parameter checking 2012-11-07 16:51:17 +00:00
Philip Eisenlohr e11d107956 fixed reporting to STDOUT/STDERR
fixed buggy parameter checking
2012-11-07 16:49:47 +00:00
Philip Eisenlohr cfc8823328 missed those three in former commit... 2012-11-05 21:28:01 +00:00
Philip Eisenlohr 1bd4262cfb renaming of (loosely related) "spectral" scripts to (more tightly related) "geom" versions. 2012-11-05 21:19:12 +00:00
Martin Diehl 1fc59107fa removed debug statement in averageDown.py, deleted obsolete spectral_iterationCount.py (new solver will report statistics anyway and most probably the current count does not work as the screen output was modified) 2012-10-31 10:06:11 +00:00
Philip Eisenlohr afaf1f4e8c made errors report to STDERR.
maxMicrostructure remains silent if not present.
2012-10-30 16:32:00 +00:00
Philip Eisenlohr f2229883b5 exchanged "maxGrainCount" for "maxMicrostructure", since this is what it really means... 2012-10-30 16:15:10 +00:00
Philip Eisenlohr ff164c9209 changed packing syntax from "N copies of x" to "N of x" (now consistent with IO.f90) 2012-10-30 15:53:46 +00:00
Philip Eisenlohr 2d36d52cf7 changed packing syntax from "N copies of x" to "N of x" (now consistent with geomPack and IO.f90) 2012-10-30 15:47:11 +00:00
Martin Diehl b9aa50c59a improved performance for large packing values 2012-10-26 12:59:43 +00:00
Martin Diehl 868984cb89 import of damask.core will not complain any more if done in setup_processing.py, however setup_processing.py will check if core.so exist after compilation and delete it before compilation 2012-10-25 07:55:27 +00:00
Philip Eisenlohr 17bfc3b284 added explanation of script purpose to its usage output (-h) 2012-10-18 07:24:44 +00:00
Martin Diehl 573c4702eb fixed bug in averageDown.py and added test to check its features 2012-10-17 15:05:26 +00:00
Martin Diehl dcff640926 fixed handling of given resolution and dimension 2012-10-17 10:04:13 +00:00
Martin Diehl 6c7affc43f improved performance (hopefully)
now each new element gets a new ID, running from 1 to N for N elements
2012-10-16 18:06:02 +00:00
Philip Eisenlohr 1004d744f2 output speed-up by *show_table/*show_model masking 2012-10-05 21:49:33 +00:00
Martin Diehl c377dae9a6 added option to create hexagonal grid (2D slices only, according to P. Konijnenbergs experience on 3D ang) 2012-10-05 17:25:54 +00:00
Martin Diehl 124451ac1a added missing comment sign # 2012-10-04 08:42:13 +00:00
Martin Diehl 0a961bef55 made test for spectral packing/unpacking working again, small fixes in the 2 scripts 2012-09-28 14:49:07 +00:00
Martin Diehl 6d97a92913 further improvements on the conversion, seems to work quite good for the 2D case now 2012-09-28 12:10:10 +00:00
Martin Diehl 6619717baf improved the conversion of tables to ang files 2012-09-26 12:20:14 +00:00
Philip Eisenlohr 5dbbb56460 fixed bug in 2D output format alignment. 2012-09-13 12:28:21 +00:00
Martin Diehl 77b2eef269 corrected wrong compiler option for gfortran in setup and updated naming scheme 2012-09-13 12:20:00 +00:00
Philip Eisenlohr b76fee325b script to shift (physical) origin of geometry file and/or shift microstructure indices by fixed amount and substitute individual indices by other ones. 2012-09-13 10:12:00 +00:00
Philip Eisenlohr 66e38606f0 syntax errors in one file terminated the script. now continues with next input... 2012-09-13 10:09:54 +00:00
Philip Eisenlohr 1c0649e17a syntax errors in one file terminated the script. now continues with next input... 2012-09-13 10:08:57 +00:00
Philip Eisenlohr 8078585ce8 removed two left-over debug statements 2012-09-13 08:46:18 +00:00
Philip Eisenlohr 3d14c5b234 functionality now subsumed into geomCanvas 2012-09-13 07:58:29 +00:00
Philip Eisenlohr 4263191423 functionality now subsumed into geomCanvas 2012-09-13 07:57:57 +00:00
Philip Eisenlohr 1fe202fd90 added $ID and line endings. 2012-09-13 07:56:45 +00:00
Philip Eisenlohr 4f6e0eda32 splitter geom-file un/packing into two separate scripts. 2012-09-05 15:15:11 +00:00
Philip Eisenlohr dc55e30cf1 added "startingIncrement" to spectralOut result interpretation 2012-09-05 15:14:36 +00:00
Martin Diehl b7dc9f9944 renamed spectral_buildElements.py to nodesFromCentroids.py and added first simple version of an ascii table to ang converter 2012-08-30 17:01:46 +00:00
Martin Diehl 73349d02f5 merged precision info into the file prec.f90 and removed prec_single.f90
precision information is now parsed as a makro, defined by the compiler, eg. -DFLOAT=8 for 8 byte long floats or -- in case no values is given -- for the FEM wrapper by the interface files.

Please don't forget to run setup_code.py  !!!!!!!!!!!

abaqus_v6.env is adjusted to specify the standard precision (float=8, int=4) and got some extra compilation options, some deprecated warning supressors are removed

Optional Marc modification will follow that allow automatic selection of suitable precision
2012-08-28 16:08:17 +00:00
Martin Diehl 3f99d2bb65 further improved prefix handling 2012-08-27 09:39:57 +00:00
Martin Diehl 96ba5ecae4 moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
Mahesh Balasubramaniam 975c3437ac added possibility to use comma in functions, to prevent splitting substituted by ';'. Eg. round(4.021,1) becomes round(4.021;1) in command line call 2012-08-22 17:47:34 +00:00
Christoph Kords 4cfc302cdd put prefix in front of the filename, not the directory name 2012-08-03 13:14:51 +00:00
Mahesh Balasubramaniam 3d7bc40520 added output of defaults for mesh, points, and box to help 2012-08-02 13:22:57 +00:00
Martin Diehl a94b089aaa removed old fortran brute force based tessellation 2012-07-26 09:07:24 +00:00
Martin Diehl 13caf2d389 made linear shape reconstruction working again, pretty similar results like corrected FFT reconstruction 2012-07-18 18:39:59 +00:00
Martin Diehl 95d292b286 2012-07-18 12:31:07 +00:00
Martin Diehl 117d06404d cleaned up the script for setting up the postprocessing tools 2012-07-17 13:23:39 +00:00
Philip Eisenlohr b30584b8d7 added "()" to file.close command 2012-07-03 12:33:11 +00:00
Philip Eisenlohr 783e1b50e2 condensed info parsing.
added info to report new origin of grid (based on --offset).
2012-06-26 18:08:50 +00:00
Philip Eisenlohr fd3d592333 added capability to respect "origin" information in header 2012-06-26 18:07:38 +00:00
Philip Eisenlohr cd04f990c5 added $id$ property and LF ending 2012-06-26 17:20:16 +00:00
Philip Eisenlohr 9041c5de39 fixed help texts
killed full number range output option (use spectral_geomPack if needed)
2012-06-26 14:41:25 +00:00
Martin Diehl 2b5ff6a456 2 small corrections for header of geom file 2012-06-26 10:41:22 +00:00
Martin Diehl 9b76b47ef9 added missing extension causing invalid symlinking 2012-06-26 10:25:39 +00:00
Martin Diehl baacbe3b11 added ifort as standard compiler, compilation is now done in DAMASK_ROOT 2012-06-25 09:06:09 +00:00
Pratheek Shanthraj 77ee33ec1f script to changes the (three-dimensional) canvas of a spectral geometry description 2012-06-21 12:57:14 +00:00
Philip Eisenlohr 06bfce0cd3 forgot to add the updated spectral_geomMultiply... 2012-06-20 17:06:28 +00:00
Philip Eisenlohr 01a9290567 deleted old incarnation...
new script follows established option parsing.
can rescale (increase only) the number of grid points in any dimension (with or without concurrent dimension scaling).
2012-06-20 16:00:48 +00:00
Philip Eisenlohr 1105824562 new option to not rescale patch (set size = 0)
added "3 header" to file output

will now extrude for spectral grids
2012-06-20 15:58:43 +00:00
Philip Eisenlohr 925759000c added option to select data separation character from a choice of:
newline
tab (default)
space
2012-06-19 16:00:59 +00:00
Philip Eisenlohr 376ec2cd94 add option to output double, triple, and quadruple scalars 2012-06-19 15:30:16 +00:00
Krishna Komerla c36a73c142 added include path for library files 2012-06-18 12:18:06 +00:00
Martin Diehl a02dc204cc added identifier for spectral solver when compiling post processing tools to setup/setup_processing.py
test with intel compiler now uses ikml
2012-06-13 17:45:18 +00:00
Philip Eisenlohr dfc8606207 boundary conditions now consider patch dimension along pulling direction (used to be orthogonal to that..!) 2012-06-13 09:28:59 +00:00
Taymor El Achkar 98b790004a Adding Second Piola-Kirchhoff data Coloumns (addPK2).
Integrating Stress-Strain table Data numerically (integrate.py).
2012-06-12 14:09:16 +00:00
Taymor El Achkar 1c427e8642 loop corrected 2012-05-14 07:58:21 +00:00
Taymor El Achkar 542768d712 bug fixed 2012-05-11 08:36:42 +00:00
Taymor El Achkar c962452cda python version of voronoi_tessellation.f90 generating geom file and material_config file (using kd_tree nearest neighbor search) 2012-05-10 16:42:07 +00:00
Krishna Komerla c752dd5474 regridding is now working, changed the subroutine into a function
changed order of arrays in nearest neighbor search to make it fortran fast
constitutive.f90 and homogenization.f90 write state size out during initialization
setup/setup_processing.py is using byterecl to be compatible with binary files written out by solver
2012-05-08 14:57:06 +00:00
Philip Eisenlohr 34ef08c762 added unique naming of output file 2012-05-07 20:36:58 +00:00
Philip Eisenlohr a84838d3ba removed erroneous print statements (leftover from debugging) 2012-05-07 19:28:21 +00:00
Philip Eisenlohr c9e17319ec now with correct ID and LF line endings... ;-) 2012-05-07 19:11:46 +00:00
Philip Eisenlohr 361b7ad398 new script to generate a twoD probability density map from ASCIItable data 2012-05-07 19:09:11 +00:00
Philip Eisenlohr c2954a2b33 now all heading labels squeeze out whitespace from their name. 2012-05-05 18:43:48 +00:00
Martin Diehl b4775249e8 corrected standard check to make f2py working with gfortran 2012-05-03 17:12:36 +00:00
Taymor El Achkar 0cb983606f spectral_geomPack is now formatting depending on necessary digits (via additional header information) 2012-05-02 13:44:12 +00:00
Philip Eisenlohr 28e9b483ad corrected wrong byte offset when reading thru 2^31-1-8 four-byte limit 2012-05-01 22:42:45 +00:00
Philip Eisenlohr b87b2160e7 fixed bug occurring for one item lines.
shortened logic here and there.
2012-04-25 13:53:56 +00:00
Martin Diehl 99f2b8603a new script for reconstruction of elements from F/IP(spectral_buildElements.py), corrected spectral_randomSeeding.py, made post/postResults.py aware of additional header/footer for file positions larger than 2**31-1 2012-04-24 15:09:20 +00:00
Taymor El Achkar f74b16051b autodetection of line length for geomPack, updated description for both files 2012-04-24 11:31:18 +00:00
Taymor El Achkar 14356bf35e new pre processing script for interpretation of "copies of" and "to" in geom files 2012-04-23 12:46:38 +00:00
Martin Diehl 335df4346f deleted accidentally checked in file 2012-04-19 11:52:01 +00:00
Martin Diehl 31753be16f updated setup/setup_processing.py with new files
added data_readLine(LINE) and data_skipLines(LINES) for ascii table
2012-04-18 11:42:57 +00:00
Martin Diehl 17f644b261 new scripts to add deformed configuration to ASCII table and for generation of layered 2D geometries (EBSD)
addCompatibilityMismatch.py is now using functions from ASCII table library
2012-04-18 09:58:59 +00:00
Martin Diehl 997933e495 corrected setup for new names of files 2012-04-16 15:01:29 +00:00
Krishna Komerla f20cecd421 integrated subroutine for regridding into mesh.f90 and made it available for python 2012-04-10 15:15:46 +00:00
Krishna Komerla d638c563af reworked python - fortran interfacing 2012-04-10 13:30:34 +00:00
Martin Diehl a3b37356be added svn flags 2012-03-31 12:42:49 +00:00
Martin Diehl c29ae95af7 new version of AL spectral solver (seems to work, but still experimental)
new concept of DAMASK for Python: Now using also IO.f90, debug.f90 etc. instead of mimicing their necessary function. This needs DAMASK_python.f90 and DAMASK_python_interface.f90 (At the moment more or less copies of respective spectral files).
polished and renamed the scripts for converging ang files
renamed voronoi_randomSeeding.py to spectral_randomSeeding.py
2012-03-29 19:54:31 +00:00
Pratheek Shanthraj 30d38436c7 switched voronoi seeding to python 2012-03-29 16:41:23 +00:00
Martin Diehl 4a6cdcc2e2 moved and renamed tools for generating geom file from ang files. using python instead of c++ for hex2cub conversion 2012-03-27 17:47:39 +00:00
Martin Diehl 3816adac27 removed batch processing (easier done on command line) and changed interactive question for filename to cmd argument 2012-03-21 17:58:11 +00:00
Philip Eisenlohr 33ab391c14 added total increment column 2012-03-14 15:05:49 +00:00
Christoph Kords ac5b6233e6 initialize lastIncrement to 1 2012-03-14 14:59:20 +00:00
Nan Jia d2051e54a5 PBC meshing can work on 2D models 2012-03-14 13:40:22 +00:00
Christoph Kords 95a2ed3443 added ability to add "damask option" to input file 2012-03-13 14:08:09 +00:00
Philip Eisenlohr 9b17015b5a added option for nodal quantity output (uses "linear" translation).
improved stability when requesting non-existing increments.
2012-03-05 15:22:10 +00:00
Christoph Kords dc7234fd02 new option "--suffix" adds a suffix to the filename 2012-02-28 14:24:45 +00:00
Christoph Kords 10e93244c1 writing info to stdout instead of stderr 2012-02-28 13:21:59 +00:00
Philip Eisenlohr fc40291f38 script to add a suffix to specified ASCIItable labels 2012-02-24 08:53:19 +00:00
Philip Eisenlohr 89176ae7f1 added "deleteInfo" to list of symLinks 2012-02-23 13:56:50 +00:00
Philip Eisenlohr 53d7076d05 remove the info part from ASCIItables 2012-02-23 13:53:50 +00:00
Philip Eisenlohr a2b46c8a36 columns can be called by index
now pipe-aware...
2012-02-23 13:53:12 +00:00
Martin Diehl d68a3d1869 added LF=UNIX to a bunch of files 2012-02-22 13:30:00 +00:00
Philip Eisenlohr ff4c281ed2 fixed whitelist/blacklist behavior (blacking out overrides whitelisting)
now broken pipes stop script's outputting.
2012-02-16 18:47:07 +00:00
Philip Eisenlohr a994b4bcc9 fixed problem when condition was empty 2012-02-16 18:00:40 +00:00
Martin Diehl f2729255f8 changed name in install script, small corrections on regex 2012-02-16 15:15:43 +00:00
Philip Eisenlohr 1bad5bf3c7 removed --count option. introduced 'internal' column #_row_#. adopted polished column head identification developed in filterTable. wiki updated. 2012-02-16 11:56:16 +00:00
Martin Diehl 9f45cb3745 new option: -c --count: count rows in ascii table and add column "row" with row number 2012-02-16 11:16:36 +00:00
Philip Eisenlohr edd5adafd0 now with ID and correct line endings... 2012-02-16 08:58:07 +00:00
Philip Eisenlohr 37bd65ea34 script to filter an ASCIItable by condition. each row is evaluated against the condition, columns can be black- or white-listed (white wins)... 2012-02-16 08:36:35 +00:00
Martin Diehl 11d3c7a317 new spectra_parseLog searches through spectral log file and parses all possible output to an ascii table 2012-02-15 20:08:35 +00:00
Martin Diehl b153a762cb now using damask.core.math 2012-02-15 19:34:43 +00:00
Christoph Kords bd32f1bf1a adapting to current format of spectral out file
now using regular expressions to match "magic" lines
2012-02-15 12:07:00 +00:00
Philip Eisenlohr 8671b8ed38 script to delete existing columns from ASCIItable 2012-02-14 12:04:37 +00:00
Martin Diehl 156ec4582a polishing, adding _pInt etc. where applicable
post_results now handels zero increment different (like FEM, it is always there even if it is not counted)
2012-02-13 14:18:07 +00:00
Philip Eisenlohr 3228cf563c fixed bug when column was referenced multiple time in a formula.
changed column tagging character to '#' ('$' gave some trouble on the shell...)
2012-02-09 15:46:25 +00:00
Martin Diehl a329a9b91d added flags for ifort and gfortran to use preprocessor 2012-02-09 13:30:59 +00:00
Philip Eisenlohr 0f7c74e02d set ID flag and line endings 2012-02-09 13:06:22 +00:00
Philip Eisenlohr 5a6cd1fc8f slightly prettified handling of finite difference accuracy requesting 2012-02-08 12:01:38 +00:00
Philip Eisenlohr 56ce779f57 generalized slip system idea of Christoph to field data of "special" dimension (i.e. not 3 or 9).
dropped "norm"-suffix from input names of norms.
ASCIItable output is now called "normType" with type being Abs, Frobenius, or Max...
2012-02-08 12:00:31 +00:00
Philip Eisenlohr 282e4a0360 scripts now figure out dimension and resolution on their own... 2012-02-08 11:18:15 +00:00
Philip Eisenlohr 9c35e4e148 small polishing of help output. 2012-02-08 09:12:08 +00:00
Christoph Kords 51e8981ba3 not specifying the location of python executable directly, but rather getting it from $path, otherwise the scripts won't work on every machine 2012-02-07 13:09:10 +00:00
Christoph Kords 2f07faa0e2 norm capable of using different p-norms (abs norm, frobenius norm, and max norm). also able to handle "slipsystem" outputs (use option -s). number of slip systems can be set by option -i, if not 12 is default. 2012-02-07 13:02:56 +00:00
Philip Eisenlohr bffc22fbe1 major restructuring. packing stencil can be shifted to allow for element or nodal value averaging. 2012-02-02 17:12:48 +00:00
Christoph Kords 9b679c3c0b switched to damask include instead of outdated damask_tools 2012-01-31 13:08:25 +00:00
Martin Diehl 27a976c04f changed to new structure (using damask module) 2012-01-26 12:46:38 +00:00
Martin Diehl becb863110 added test for gfortran and gfortran vs intel, renamed intel test to new numbering scheme and changed to new div criterion
introduced "try" statement in lib/damask/test/test.py to avoid crash if a test variant fails
2012-01-25 15:14:31 +00:00
Philip Eisenlohr 7869379d38 output directory (--dir) can now cope with absolute path... 2012-01-20 19:53:56 +00:00
Philip Eisenlohr 076fef3323 now fully supports output of vector fields (needs POINT data for useful visualization!!) 2012-01-19 20:42:50 +00:00
Philip Eisenlohr b134ec7a39 adopted ASCIItable class and checked correctness of results. 2012-01-19 20:41:56 +00:00
Philip Eisenlohr acf7c86531 respect existing symbolic link to core.so (necessary since different workstation have different system setup..!) 2012-01-19 20:41:08 +00:00
Philip Eisenlohr ae6abedee7 set makefile line endings.
small output polish in patchFrom...
2012-01-16 16:06:41 +00:00
Philip Eisenlohr 447e181f55 fixed rounding problems with nodal coordinates 2012-01-16 16:05:02 +00:00
Philip Eisenlohr 7ed2c19d0f switched importing from "msc_tools" to "damask"
patchFrom... now skips blank lines, has more commenting, treats (artificial) bi-crystal (somewhat) gracefully.
2012-01-16 09:32:36 +00:00
Philip Eisenlohr 8584532205 corrected '-o <file>' syntax: now with space in between. 2012-01-12 13:46:35 +00:00
Philip Eisenlohr 55639f3362 added log time scale capability for spectral results 2012-01-12 08:06:25 +00:00
Philip Eisenlohr 6163896531 $ID$ was not active so far... 2012-01-11 20:18:47 +00:00
Martin Diehl 9abf5a110d changed from old DAMASK (f2py) module to new integrated damask tools 2012-01-06 10:41:23 +00:00
Pratheek Shanthraj 159c8cad89 corrected directories for linking 2012-01-06 10:41:01 +00:00
Pratheek Shanthraj 8b572ff4c5 translating command line options for compiler name to actual name of executable 2012-01-06 10:00:22 +00:00
Martin Diehl dd1e968908 setup_processing.py uses damask module but builds the core part of it, therefore made the use damask.core optional by setting a try statement in __init__.py and a "from damask import xxx" 2012-01-04 11:06:24 +00:00
Philip Eisenlohr fbe908ccd2 now uses damask.core.math package 2011-12-22 10:42:24 +00:00
Philip Eisenlohr 35bd460e39 added "core" package capability to processing
(renamed former f2py modules)

reverted pathinfo...
2011-12-22 10:36:59 +00:00
Krishna Komerla f463c2da70 added addCurl.py, not sure if it works correctly. still in old (eq. to addDivergence.py) style 2011-12-21 17:25:31 +00:00
Martin Diehl 3706bcbc3e fixed bug 2011-12-20 14:19:01 +00:00
Martin Diehl 8d5dcc97bd added geomCrop to crop a box out of a geom file 2011-12-20 13:33:16 +00:00
Philip Eisenlohr 1194deff54 corrected leftover mistake (items --> table.data) 2011-12-15 10:53:20 +00:00
Philip Eisenlohr fb7adf7b89 adopted use of general damask package 2011-12-15 08:53:18 +00:00
Christoph Kords 609175318e added option for output of colormap palette also as float values 0.0-1.0 2011-12-08 10:02:48 +00:00
Philip Eisenlohr 2ceb78c337 introduced new damask_tools method "relPath" and adopted it in setup_processing.py and setup_code.py 2011-12-06 18:38:03 +00:00
Martin Diehl ea0fe7b406 corrected 3D visualize (math.f90 part was not working)
small polishing of voronoi_tessellation.f90
2011-12-06 17:46:33 +00:00
Martin Diehl 5ebeb96e85 made DAMASK to work with gfortran:
-removed to long lines
-restructured f2py modules and merged make_DAMASK2Python into setup processing
-setup_code.py now sets library path in makefile and asks for compile switches for spectral code
-substituted \ in format strings with $

restructured DAMASK_spectral:
-more logical output and structure of code
-better input for spectral debug parameters
2011-12-06 16:58:17 +00:00
Philip Eisenlohr 9d3f7b8d3d adopted ASCII_TABLE class 2011-12-04 09:57:13 +00:00
Christoph Kords 42c3074821 mini calculator for column-column arithmetic 2011-12-02 15:15:36 +00:00
Martin Diehl 148f57b86d changed it to work with changes in last commit 2011-12-01 12:02:36 +00:00
Martin Diehl ace6851389 moved all routines from postprocessingMath to math.90, renamed the module to DAMASK, changed scripts and interfaces accordingly.
polished math.f90 (mainly added _pInt/_pReal and intent(in/out))
curl_fft is still a dummy function
2011-12-01 12:01:13 +00:00
Philip Eisenlohr e98590d850 adopted ASCII_TABLE class 2011-11-24 17:10:50 +00:00
Philip Eisenlohr 18a09d7cff corrected handling of STDIN|STDOUT
adopted ASCII_TABLE class
2011-11-24 14:48:02 +00:00
Martin Diehl 267b8ac30c started to add curl calculation to postprocessingMath.f90
restructured colormap calculation. Algorithm is working now, but input/output still has to be done
2011-11-23 20:08:48 +00:00
Philip Eisenlohr 48f8d4ccb5 exchanged logic now using ASCII_TABLE class... 2011-11-23 14:54:53 +00:00
Philip Eisenlohr f685bbba0e exchanged location of "graincount" in user block.
now matches wiki entry:
1. homogenization block
2. grain block
  (grain count
   sub-block[s] of crystallite and constitutive)
2011-11-23 09:09:00 +00:00
Philip Eisenlohr e8f5996a96 renamed MSC_TOOLS.library_paths to libraryPath, since only single string is returned 2011-11-23 08:25:52 +00:00
Philip Eisenlohr 21fcd0357e now subsumed into general postResults functionality 2011-11-22 19:43:37 +00:00
Martin Diehl 75e20dffb7 corrected version conflict 2011-11-17 21:36:56 +00:00
Martin Diehl 09799b5b58 compile test is now at least compiling. still comparison to reference results has to be done 2011-11-11 15:06:33 +00:00
Claudio Zambaldi 5aacb6032c removed outdated comments 2011-11-09 18:04:51 +00:00
Philip Eisenlohr 44e5d25274 now aware of $DAMASK_BIN and guessing if environment missing 2011-11-09 17:51:00 +00:00
Claudio Zambaldi 41b8232695 setup_shellrc now adds $DAMASK_ROOT/bin to the $PATH
in setup/setup_processing.py uncomment 3 lines to remove the links from your ~/bin
2011-11-09 16:20:52 +00:00
Claudio Zambaldi 06176873e4 after a somewhat lengthy discussion with Philip about usability and developability and general file-naming philosophy we think that we found a compromise on the "to-dot-py or not-to-dot-py" issue:
symlinks in DAMASK_ROOT/bin do not carry the extension, but the source files do.
Hope that results in the maximum number of happy developers and users.
2011-11-09 15:37:45 +00:00
Martin Diehl 98513a4e0d 2011-11-07 18:27:33 +00:00
Martin Diehl de96e99bca corrected determination of restartRead from commandline (now done by FEsolving instead of DAMASK_spectral_interface)
recompiled fftw libraries with --enable-shared to make them work with f2py
added draft for compilation test of spectral solver
2011-11-07 18:25:10 +00:00
Christoph Kords ba63d3231f fixed string include 2011-11-04 10:27:41 +00:00
Philip Eisenlohr 9e3d7d7d6c made $DAMASK_ROOT definition optional 2011-11-03 13:51:54 +00:00
Philip Eisenlohr b9647b2584 moved parts into new "lib" folder 2011-11-03 13:21:11 +00:00
Philip Eisenlohr aba7937845 now uses msc_tools method to figure out Mentat path 2011-11-03 13:16:00 +00:00
Philip Eisenlohr edb8c0cd1e no part of "lib/pathinfo" 2011-11-03 13:00:39 +00:00
Philip Eisenlohr b5e6b754fb starting "lib" subfolder for shared goodies. 2011-11-03 12:19:26 +00:00
Philip Eisenlohr db12869c16 shifted back to main folder. small polish. 2011-11-03 12:18:07 +00:00
Philip Eisenlohr b847db969a changed "texture" to more correct "structure" 2011-11-03 12:07:41 +00:00
Philip Eisenlohr 4e8f36a133 remove $ID$ from first line (I am wondering how this could work...) 2011-11-02 18:49:53 +00:00
Martin Diehl 680ba9082f removed deadlock when calling IO_warning(33)
polished IO_error and IO_warning
checked OpenMP critical statements in DAMASK_spectral.f90
corrected writing of headed in DAMASK_spectral.f90
2011-11-02 14:38:42 +00:00
Claudio Zambaldi 447e69019c Introduced environment variable DAMASK_ROOT.
It is set in the DAMASK root folder by running damask_env.sh
Much needed in the testing routines so far (try ./testing/run_tests.py)
damask_env.sh could also trigger other scripts to get to a working setup after fresh checkout. For example it could run 
./processing/setup/setup_processing.py
./code/setup/setup_code.py
if it finds that we have a fresh checkout.
2011-10-27 17:55:42 +00:00
Martin Diehl 7642509a47 first working draft of automated code testing, run_tests.py assumes DAMASK is located under ~/DAMASK/ 2011-10-24 16:24:15 +00:00
Claudio Zambaldi e7a60988a1 modified exit number extraction 2011-10-24 13:02:08 +00:00
Claudio Zambaldi 93b2160c2f extract exit number from MSC out-file. Other MSC utility functions can also go into MSC_TOOLS class. 2011-10-24 12:59:46 +00:00
Philip Eisenlohr 414bacb096 deleted unused vars. changed linking library info/path 2011-10-20 12:47:57 +00:00
Philip Eisenlohr ed08dfc2be added option to select between cell-centered (as before) or vertex-centered data 2011-10-20 12:29:59 +00:00
Philip Eisenlohr c78227cec1 added option to skip data points along x,y,z in case they are periodic images. relevant for vertex-centered data for which outer surface data is doubled, i.e. data(0,0,0) == data(Nx,Ny,Nz) 2011-10-20 12:28:39 +00:00
Philip Eisenlohr 3a0911ca89 added option to output RGB palette on terminal
number of colors is now variable (default 32)
warning issued if MSC path not valid

new "redblue" sym colormap
2011-10-20 11:59:15 +00:00
Philip Eisenlohr 96223ddf39 corrected for-loop index bug. two-dim output is now optional. 2011-10-14 23:43:45 +00:00
Philip Eisenlohr 708b4d2eca seed-file header format corrected, setup script now contains minimalSurface and vicinityOffset. removed .exe from compile output 2011-10-14 22:39:58 +00:00
Philip Eisenlohr ba0488638b alter a spectral geom file such that any voxel that sees within a given vicinity a different microstructure than itself gets offset by a given value. this allows to identify/isolate grain boundary regions... 2011-10-11 17:35:53 +00:00
Philip Eisenlohr 98c9bf9c15 generates spectral geom file for (currently) gyroid or diamond minimal surfaces. Inside and outside of a given threshold value are distinguished by microstructure 1 and 2. 2011-10-11 17:30:55 +00:00
Philip Eisenlohr ffc6442098 can now deal with arbitrarily long lines for microstructure definition. useful for 2D ASCII representation of grain morphology in the geom file.
additional internal code reworking.
2011-10-11 17:25:22 +00:00
Philip Eisenlohr c7c541f393 corrected typos and such 2011-09-13 15:57:58 +00:00
Martin Diehl d235de1aa5 added two small (quick and dirty) tools to convert data from EBSD to input files for spectral method, put them together with patchFromReconstructedBoundaries into new folder. 2011-09-13 15:46:44 +00:00
Philip Eisenlohr b412239d9f reflects new output format of DAMASK_spectral to find
*** Loadcase...
lines.
2011-09-05 13:39:44 +00:00
Philip Eisenlohr 48ac3956ce added '\n' escaping of ID string in VTK header 2011-09-05 13:38:10 +00:00
Philip Eisenlohr f458f026db forgot to include string module, too 2011-09-05 08:54:29 +00:00
Philip Eisenlohr 0ac5109c94 forgot to include string module 2011-09-05 08:50:36 +00:00
Martin Diehl 4eb8e25b6d no fitting recent file renames 2011-08-26 12:25:11 +00:00