Martin Diehl
1149053c61
updated to new ASCII table style
2015-08-12 20:59:10 +00:00
Martin Diehl
35863e0229
fixed averageDown and made it's test running
2015-08-12 13:43:05 +00:00
Martin Diehl
bceeb0964c
corrected calculation of expected file size for legacy files beyond the 4 GB limit
2015-08-10 18:48:48 +00:00
Tias Maiti
126cea24ce
fixed syntax and undefined variable calling errors
2015-08-09 22:12:49 +00:00
Philip Eisenlohr
a4772343b0
adopted new ASCIItable API. some polishing.
2015-08-07 22:08:54 +00:00
Philip Eisenlohr
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
Philip Eisenlohr
020a3e2634
superfluous since same can be (even more flexibly) accomplished with:
...
reLabel -l old -s old+tag
2015-07-26 00:41:42 +00:00
Philip Eisenlohr
0db33f21b5
superfluous since same can be accomplished with:
...
showTable -l -d (labels and data)
2015-07-26 00:39:32 +00:00
Chen Zhang
657ed7ed35
group voxels/pts by orientation and position, require spicy.
2015-07-24 13:30:33 +00:00
Philip Eisenlohr
e08b7bd02e
forgot to rescale transparency mask by pixelsizes.
2015-07-16 22:34:26 +00:00
Tias Maiti
3c9d6df889
fixed typo in last commit
2015-07-15 18:15:39 +00:00
Tias Maiti
6ebc490207
fixed broken functionality by adopting new ASCIItable class output for data_readArray().
2015-07-15 16:57:03 +00:00
Philip Eisenlohr
dce0501358
script to rename labels in an ASCIItable
2015-07-10 16:28:01 +00:00
Philip Eisenlohr
f8658ffea1
added “gap” value to render pieces of resulting image transparent.
2015-07-07 14:53:55 +00:00
Philip Eisenlohr
812d17f91c
streamlined column processing based on recently introduced asciitable functionality.
2015-07-01 15:48:34 +00:00
Martin Diehl
ef243d3e19
added references
2015-06-30 14:52:48 +00:00
Philip Eisenlohr
47249bb52a
added possibility to scale deformation fluctuation field.
2015-06-29 09:44:49 +00:00
Philip Eisenlohr
9b1f16e99e
report data range.
...
gracefully deal with constant field (below 1e-8 noise).
2015-06-19 11:36:21 +00:00
Tias Maiti
94423cc7ac
added scriptID line “ removed during last commit”
2015-06-17 19:47:50 +00:00
Tias Maiti
012c830eff
removed writing of debugging statement to final output
2015-06-17 19:44:01 +00:00
Philip Eisenlohr
e440305532
streamlined ASCIItable error checking.
2015-06-17 06:52:43 +00:00
Philip Eisenlohr
5cc7b60a88
simplified processing of ASCIItables by utilizing the improved class methods.
...
modernized file looping.
2015-06-16 17:21:24 +00:00
Philip Eisenlohr
c089ff9256
now with $ID$ and correct line endings…
2015-06-15 18:13:06 +00:00
Philip Eisenlohr
6086baba52
Generate PNG image from scalar data on grid deformed by (periodic) deformation gradient.
2015-06-15 18:12:38 +00:00
Philip Eisenlohr
37792f67df
automatically figure dimension of labels to tag.
2015-06-13 11:55:20 +00:00
Philip Eisenlohr
e243632eb5
simplifications by adopting functionality provided by new asciitable class methods.
2015-06-08 05:07:14 +00:00
Martin Diehl
d99e34d870
typo caused problems with more than one tensor
2015-06-06 15:42:29 +00:00
Philip Eisenlohr
129446e687
simplified script. deals now only with single format at a time. result is printed to STDOUT unless “basename” option specified.
2015-06-06 11:12:07 +00:00
Philip Eisenlohr
bb9e080790
input file handling now save for large file count.
...
reshape input rotation matrix to (3,3).
2015-06-05 11:47:27 +00:00
Philip Eisenlohr
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
Martin Diehl
2877066a6c
removed debug statement and simplified
2015-06-04 08:51:10 +00:00
Yang Su
bb677a26aa
added interface for predefined colormaps
2015-05-29 18:50:54 +00:00
Yang Su
92654dc2cd
fixed syntax bug, instantiating of Color object, and file closure.
2015-05-29 18:36:09 +00:00
Philip Eisenlohr
54746c85d3
fixed bug for only blacklisting.
2015-05-28 22:31:32 +00:00
Philip Eisenlohr
c327735c0d
order of whitelist is maintained in output (only if no blacklist is specified). allows to rearrange column order in tables.
2015-05-27 23:02:11 +00:00
Harsha Phukan
4107d5d1d2
Script to calculate Quaternion from input orientation matrix
2015-05-26 06:38:48 +00:00
Martin Diehl
5900fa4bf5
corrected defaults and simplified loops
2015-05-25 10:49:20 +00:00
Martin Diehl
1f160dfd72
FFT was at single precision only
2015-05-24 16:35:37 +00:00
Martin Diehl
e8fb49edc6
missing bracket
2015-05-22 06:17:35 +00:00
Martin Diehl
737e474cea
consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior
2015-05-22 05:56:49 +00:00
Martin Diehl
fbfa55e910
adjusted to new table style and naming of output
2015-05-22 04:57:05 +00:00
Philip Eisenlohr
f363d81de5
simplified column parsing
2015-05-21 21:54:47 +00:00
Yannick Naunheim
2349e6c79c
standard way of reporting
2015-05-21 16:04:19 +00:00
Philip Eisenlohr
14b921f6d5
corrected help text.
2015-05-21 00:13:50 +00:00
Philip Eisenlohr
df5dd98576
simplified boolean dictionaries to “if else” constructs.
2015-05-21 00:13:11 +00:00
Philip Eisenlohr
acc2cb656b
simplifications due to better functionality available through asciitable.py
...
output filename format has slightly changed: binned-X-Y_weighted-W_
2015-05-21 00:08:32 +00:00
Philip Eisenlohr
439d778cc0
simplified column check.
...
fixed typos and improved help.
2015-05-20 23:21:35 +00:00
Philip Eisenlohr
973f092fd9
similar to imageData but uses RGB triplet as color value instead of mapping a scalar.
...
Can only use columnar data and not 2D arrays, though.
2015-05-19 21:15:15 +00:00
Philip Eisenlohr
ee65b269ad
simplified data column determination.
2015-05-19 21:14:19 +00:00
Harsha Phukan
f7faa3eeca
finally fixed the bug in the transformation and incorporated rotation to conform to TSL convention
2015-05-18 22:28:24 +00:00
Martin Diehl
03fef5fd6e
simplified option parsing
2015-05-15 13:49:16 +00:00
Martin Diehl
6a38b4396f
simplified help
2015-05-15 13:34:52 +00:00
Martin Diehl
a3bed5cc42
short options conflicting with typical use
2015-05-15 10:33:32 +00:00
Martin Diehl
a451a69c2c
corrected default type (only list for 'extend')
2015-05-14 18:48:15 +00:00
Aritra Chakraborty
3e8f16c515
range parameter is now autoscaled to account for -log option, i.e. range is always given as bounds of original data
2015-05-13 13:45:26 +00:00
Philip Eisenlohr
b0a37497a1
fixed buggy coordinate transform.
2015-05-12 15:30:00 +00:00
Martin Diehl
6a98c7efad
simplified option parsing
2015-05-11 20:12:31 +00:00
Martin Diehl
2102fadfc7
improved help for automatic documentation
2015-05-11 19:47:52 +00:00
Philip Eisenlohr
537c42d146
script to transform coordinate system at APS beam line 34-ID-E from X,Y,Z,F to strain x,y,z
2015-05-11 14:15:50 +00:00
Martin Diehl
eff71b418b
now working with corrected asciitable
2015-05-10 20:59:23 +00:00
Martin Diehl
b60f868a76
renumbering asciitable when readArray for selected columns only
...
test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
Martin Diehl
8bf7a7ef6a
some beautifications
2015-05-10 10:58:32 +00:00
Martin Diehl
c0a9141c8f
updated help to enable automated documentation
2015-05-10 10:56:02 +00:00
Martin Diehl
a03b1ede99
improved help for automatic documentation
2015-05-10 08:59:21 +00:00
Martin Diehl
d87b70fe49
filterTable can do the job
2015-05-09 21:33:17 +00:00
Martin Diehl
18831e0e80
improved help for automatic documentation and simplified some scripts
2015-05-09 21:32:23 +00:00
Martin Diehl
47b8605733
improved help for automatic documentation and simplified some scripts
2015-05-09 13:01:31 +00:00
Martin Diehl
59e546e3d7
improved help for automatic documentation and simplified some scripts
2015-05-09 12:45:30 +00:00
Philip Eisenlohr
cb42fb9c5d
clarified help text.
2015-05-05 16:58:56 +00:00
Philip Eisenlohr
58b3d017bd
changed option name from “invertColor” to “invert”
2015-05-01 17:58:10 +00:00
Philip Eisenlohr
c05df20370
throw error message when DAMASK output obviously not present in T16 file
2015-04-28 17:54:00 +00:00
Martin Diehl
895421e677
changed from core module fftw to fftwpack from latex, tolerances need to be less strict
2015-04-24 08:07:13 +00:00
Philip Eisenlohr
790aa32b1b
fixed string to character splitting of weight column label
2015-04-13 20:24:03 +00:00
Philip Eisenlohr
4bcc80911e
changed grid to float from (wrong) integer type.
...
row and column probability density normalization now takes place BEFORE limiting data range.
2015-04-13 19:55:28 +00:00
Tias Maiti
5257a2161f
added options for x and y normalization
2015-04-09 06:45:21 +00:00
Martin Diehl
57a2c90d30
corrected according to vtk specification and remove an unused option
2015-04-08 18:48:35 +00:00
Martin Diehl
0544706c7b
corrected help for legacy format
2015-04-08 12:51:40 +00:00
Martin Diehl
92a67e1a9d
geom_fromAng.py crashed when found empty line (eg. at the end of the file), now fixed
2015-04-01 14:42:25 +00:00
Martin Diehl
a1956436be
fixed bug introduced last time when searching for keywords in spectralOut header
...
made reading in of header more robust by explicitly using the information given by fortran specifies the data length
introduced a legacy mode again, now it is used to read old spectralOut files prior to rev 4017
2015-04-01 10:02:21 +00:00
Philip Eisenlohr
38943c1e94
improved help
2015-03-29 15:37:40 +00:00
Martin Diehl
913c5347a5
removed handling for old legacy format (we might introduce a new one)
2015-03-29 09:08:42 +00:00
Martin Diehl
66d4ff097f
removed obsolete comment
2015-03-28 11:44:17 +00:00
Martin Diehl
8a30021202
cleaned up core modul
2015-03-27 14:10:18 +00:00
Pratheek Shanthraj
1ee81e74ea
more patches to get the tests running again:
...
- fixed increment counting in postResults to current output scheme
- corrected node coordinates calculation
- some work on restart (restart test still not running)
2015-03-26 21:19:28 +00:00
Pratheek Shanthraj
fe4373a9f9
updated post processing script for MPI IO spectralOut file
2015-03-25 16:09:56 +00:00
Martin Diehl
1a3bfc7d1f
updated according to new convention for ip and nodes
2015-03-24 13:52:40 +00:00
Martin Diehl
12cb5e56fe
fixed interpretation 'spectralOut' header. Seem to have been buggy all the time, but manifested itself only after keyword change. Also added ':' after keywords to be more robust
2015-03-15 15:29:38 +00:00
Martin Diehl
df2ee87a7c
corrected help
2015-03-13 14:47:22 +00:00
Martin Diehl
c4f639dbfb
prevent crash in option parsing
2015-03-13 14:46:40 +00:00
Martin Diehl
def6d6b878
re-introduced determination of elem column
2015-03-12 06:20:40 +00:00
Bret Dunlap
3f340ffac9
fixed bug for table data without labels in header
2015-03-11 20:39:14 +00:00
Martin Diehl
72efc7b30c
renamed resolution -> grid, dimension -> size
2015-03-11 08:55:48 +00:00
Martin Diehl
0dde6539ed
renamed from 1_ip to 1_ipinitialcoord
2015-03-11 07:22:11 +00:00
Martin Diehl
eb1561b528
changed postprocessing to use 1_ip instead of ip.x etc, plus corrected test files headers
2015-03-10 21:15:05 +00:00
Martin Diehl
271c9eed8b
use 1_ip instead of ip.x
...
Old format still as fallback option to support legacy files
2015-03-09 12:52:43 +00:00
Martin Diehl
4d587b1bf9
introduced 'alias' for ip.x by first searching for 1_ip
2015-03-09 11:32:16 +00:00
Philip Eisenlohr
639b030c65
shortened code for opening input file list
2015-03-06 17:04:44 +00:00
Tias Maiti
654aacf207
removed invalid options (options.packing, options.shift)
2015-03-05 21:41:53 +00:00
Philip Eisenlohr
53b40662ec
now with executable, correct line endings, and ID tags.
2015-02-11 17:26:56 +00:00
Philip Eisenlohr
d5f9f543ca
Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
...
Supersedes “imageFromData” from “Code” repository.
2015-02-11 17:25:49 +00:00
Philip Eisenlohr
9eae665365
fixed ‘too many files open’ issue when processing a large list of input tables.
2015-02-11 17:22:47 +00:00
Tias Maiti
1b1ed3bbcf
removed unnecessary lines
2015-02-11 06:18:08 +00:00
Martin Diehl
63434c2ddb
corrected error checking for correct type
2015-02-09 08:57:14 +00:00
Martin Diehl
7edd209ce4
corrected wrong name in add..., more verbose error checking for geom_from...
2015-02-07 22:22:28 +00:00
Martin Diehl
6140285ddd
small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well
2015-02-07 18:13:51 +00:00
Martin Diehl
e4a94aa72b
put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance
2015-02-07 17:11:46 +00:00
Tias Maiti
2c9c04eb76
added script to replace all rows of an ASCII table by a single row containing their average
2015-01-23 00:57:10 +00:00
Martin Diehl
5be9a75cff
fixed indentation
2015-01-22 09:04:01 +00:00
Martin Diehl
c08f704dee
added Id + a little help
2015-01-07 19:29:27 +00:00
Tias Maiti
ca58216134
added missing math module import
2015-01-05 12:25:03 +00:00
Martin Diehl
3e3c13bf0b
added missing math module import
2015-01-04 21:02:17 +00:00
Martin Diehl
5e8fff13d9
worked on the vtk binary out, still some problems with multicomponent datatypes
2014-12-18 21:46:38 +00:00
Martin Diehl
6604d0f8e8
polishing
2014-12-18 19:26:52 +00:00
Philip Eisenlohr
89f8ba979e
Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame.
2014-12-13 00:12:55 +00:00
Philip Eisenlohr
b17dcd7652
added options ’—origin’ and ‘—geom’. Latter interprets the geom-header to derive voxel sizes.
2014-11-18 15:26:59 +00:00
Philip Eisenlohr
461a3fa979
fixed syntax error and added ‘—render’ option to immediately see output on screen
2014-11-18 15:24:09 +00:00
Philip Eisenlohr
a3196669ea
exchanged deprecated data array read function
2014-11-18 15:22:00 +00:00
Philip Eisenlohr
7136db1fd8
fixed syntax error: ’options.error’ —> ‘parser.error’ for error handling
2014-11-18 15:20:57 +00:00
Philip Eisenlohr
99ffa554eb
added ‘1_*’ to ‘*’ as possible column label indicator
2014-11-18 15:20:10 +00:00
Philip Eisenlohr
b5ef329f34
changed default position column format from .x,.y,.z to more standard 1_,2_,3_
2014-11-18 15:18:27 +00:00
Philip Eisenlohr
f6741138e7
had badly messed up the file handling in commit 3630. STDIN did not work, files were not checked for existence…
2014-10-29 13:27:40 +00:00
Martin Diehl
bdd2d55383
small bug fix for last commit
2014-10-24 06:36:01 +00:00
Philip Eisenlohr
13ba71a314
fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input.
...
changed file handle setup to allow for large lists of input files.
2014-10-23 21:23:10 +00:00
Martin Diehl
dc7a4bb978
using damasks extentable option + correct version string
2014-10-16 14:56:44 +00:00
Martin Diehl
ce1f17c9cb
worked on the binary vtk out needed for large datasets
2014-10-14 07:13:13 +00:00
Philip Eisenlohr
23ee538dcb
shortened syntax. fixed undefined file['croak']
2014-10-02 04:49:46 +00:00
Philip Eisenlohr
496c3d4bc8
added line breaks identifier and $Id$ flag
2014-09-25 21:54:42 +00:00
Tias Maiti
78ab14806f
fixed bug in parser option type definition
2014-09-21 17:59:06 +00:00
Martin Diehl
d07a098724
fixed wrong help introduced with last change on 3Dvisualize
2014-09-19 09:50:26 +00:00
Martin Diehl
a7d831de06
forgot to import python module
2014-09-15 10:07:52 +00:00
Martin Diehl
5657119b11
updated post processing test: rotateData is doing something, corrected addDeviator defauls
2014-09-12 14:49:26 +00:00
Martin Diehl
f2c4db0bb5
correcting help and default, some comments
2014-09-12 14:46:12 +00:00
Martin Diehl
afb9a2186b
removed explicit default setting: type='string' and action='store'
2014-09-12 14:14:55 +00:00
Martin Diehl
9ba7851c14
fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language!
2014-09-12 13:13:05 +00:00
Philip Eisenlohr
5a159dcdfa
script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr)
2014-09-05 20:28:39 +00:00
Martin Diehl
6cdcdecdfa
post processing scripts are working again.
...
@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
2014-08-25 21:13:39 +00:00
Martin Diehl
c7837e1f66
changed manual input/output close to class method
2014-08-22 16:58:53 +00:00
Philip Eisenlohr
99e3c9a397
fixed (potentially) buggy rotation of tensors. convention is:
...
with A v = b
v' = R v
A' = R A R^T
such that
A' v' = R A R^T R v = R A v (= R b = b', i.e. old result transformed into other coordinate basis)
2014-08-22 15:32:48 +00:00
Philip Eisenlohr
df27115472
extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
2014-08-22 15:25:51 +00:00
Philip Eisenlohr
77df55c998
extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
2014-08-21 17:16:43 +00:00
Philip Eisenlohr
9aa22d4a08
simplified column key generation
2014-08-21 16:17:23 +00:00
Philip Eisenlohr
96b16dd97b
reshape "matrix" input data from (currently wrong) 9x1 to 3x3 layout.
...
simplified input validity check.
2014-08-21 16:14:06 +00:00
Martin Diehl
15a6015bc2
added some more post processing tests
...
DAMASK env now reports in MiB (GiB is too big for small machines)
2014-08-07 16:51:26 +00:00
Martin Diehl
649e637561
added some more post processing tests and improved output
2014-08-06 19:06:33 +00:00
Martin Diehl
938352d43a
fixed calculation of size and dimension in case of 2D (was limited to third dim only)
...
plus polishing
2014-08-06 15:25:18 +00:00
Martin Diehl
cbafad50d0
some more work on the postprocessing scripts, decreased test tolerance because spectral decomposition has rounding errors (depending on machine/python/numpy version)
2014-08-06 13:27:09 +00:00
Martin Diehl
a0f9865133
updated to state-of-the art file handling etc
2014-08-04 20:07:20 +00:00
Martin Diehl
7df8f04f65
updated test for postprocessing and improve some of the scripts
2014-08-04 17:53:41 +00:00
Martin Diehl
0b93e7c5a5
corrected addDivergence script. Restarting still not working for new state, needs further investigations: tightend tolerances again
2014-07-27 09:43:00 +00:00
Tias Maiti
e01630e073
fixed bug in tuple assignment
2014-07-25 17:49:22 +00:00