0d57a13c9b
run tests on Windows
...
XDMF does not work (not sure why, works locally)
2022-03-26 22:16:32 +01:00
bd56a3f2a5
tests might fail on windows
2022-03-26 22:13:54 +01:00
ff3d3afe9e
'/' is separator in h5py even on windows.
...
os.path assumes OS-dependent path separators
2022-03-26 22:09:45 +01:00
c11d38b2ec
avoid blocking pop-up
2022-03-26 22:08:09 +01:00
5b87fafcae
Merge branch 'consistent-orientation-from' into 'development'
...
consistent "shape" keyword in from_X
Closes #165
See merge request damask/DAMASK!546
2022-03-20 00:00:25 +00:00
21e076b0f9
Table.save(with_labels=False) to properly store ANG
2022-03-17 21:23:57 -04:00
378b8b2396
use consistent "shape" keyword when shape not clear from input data
2022-03-14 16:24:05 -04:00
56c33b8a5c
flipped VTK.add to use (label,data) to be consistent with other functionality
2022-03-11 20:07:18 -05:00
0d22cfb83d
table.__init__ now has common order of arguments (label, data)
2022-03-11 22:31:35 +01:00
c5c2763e1f
several improvements
...
- DataFrame.append is deprecated
- restored special case `None` for Grid.vicinity_offset and Grid.clean
- sorted procedures of Grid according to functionality
2022-03-11 22:22:12 +01:00
d1c6434bb2
corner case: empty set
...
will be checked by extra test
2022-03-10 07:37:46 +01:00
4f6d9aa4b6
adjusted faulty test
2022-03-09 19:01:45 -05:00
f13a4c82da
grid.clean/vicinity now uses ball neighborhood; lots of polishing
2022-03-09 18:26:52 -05:00
b916712946
Merge remote-tracking branch 'origin/keyword-view' into polishing
2022-03-09 15:36:00 +01:00
c2453c56f1
Merge remote-tracking branch 'origin/development' into polishing
2022-03-09 15:22:22 +01:00
c4a7c0096a
give default directly
...
only Colormap object caused problem (tab completion triggered '__repr__'
which means showing colormap in maplotlib window
2022-03-08 22:43:54 +01:00
73f01c07d0
clarified colormap default; accept string as colormap name
2022-03-08 09:31:08 -05:00
fe8e55e470
KeyError more sensible here
2022-03-07 11:28:17 +01:00
d7ba853859
use None for no selection, empty list is 'nothing'
2022-03-05 20:37:47 +01:00
a77b63718c
remove deprecated interface options
2022-03-04 20:27:32 +01:00
161e4b6815
testing new functionality
2022-03-04 10:57:49 +01:00
03912b0a03
Merge remote-tracking branch 'origin/development' into polishing
2022-03-04 03:44:36 +01:00
f9e04bc4cb
unifying interface
...
same same for same functionality, allow user to specify single integer
for convenience
2022-02-28 16:14:40 +01:00
c7b512a94e
support the user
2022-02-26 17:40:12 +01:00
bee3f08d77
test __repr__ functionality with str()
2022-02-24 19:15:28 -05:00
fd52c18488
remove debug print statements in tests
2022-02-24 18:35:48 -05:00
59755c67ce
human-readable reporting
2022-02-23 06:49:38 +01:00
661b7fb602
slight polish
2022-02-22 10:56:12 -05:00
be11da2284
testing new functionality
2022-02-22 14:00:36 +01:00
e8a4f06634
out of place behavior for VTK
2022-02-22 07:49:44 +01:00
0adc827278
Merge branch 'development' into python-vtk-improvements
2022-02-18 14:46:40 -05:00
e602653b3b
remove obsolete grid_filter import
2022-02-17 18:50:53 -05:00
38ac791b58
proper understanding of a rectiliniearGrid
2022-02-17 17:54:26 -05:00
ed50cd022b
shorter, potential for higher precision
...
np.sum has an better alogrithm but fails ...
2022-02-16 23:40:02 +01:00
4426172c14
Merge branch 'development' into python-vtk-improvements
2022-02-15 18:07:18 -05:00
c5f2865121
make apparent that vtk.get automatically "squeezes"
2022-02-15 18:04:21 -05:00
e2d1ffe7b8
condensed add_table test
2022-02-15 16:42:17 -05:00
6916160ed1
implemented VTK.add(damask.Table)
2022-02-15 16:38:02 -05:00
d4f7114164
Merge branch 'improved-table-slicing' into 'development'
...
Extended slicing functionality of Table
See merge request damask/DAMASK!522
2022-02-15 12:48:39 +00:00
2ce464c48e
vtk.comments as directly accessed property
2022-02-14 09:24:12 -05:00
1b08f90d6c
allow constant (non-label) value in cm.from_table() keys
2022-02-13 23:54:16 -05:00
0300912b30
Table.__eq__ for proper comparison; logical masks for slicing now work
2022-02-13 22:00:48 -05:00
d72347fe25
Merge remote-tracking branch 'origin/development' into thermal-restart
2022-02-02 23:07:32 +01:00
6dcf6b972c
complaints from prospector (PEP8)
2022-02-02 09:14:41 +01:00
1bd654781b
tests updated
2022-02-02 00:20:14 +01:00
6bd23715b8
added multiplication as color repeat functionality
2022-01-24 11:56:33 +01:00
a545baebbf
VTK polishing
...
avoid segmentation fault (also allows testing)
2022-01-16 19:23:12 +01:00
6657e5c4eb
testing a few corner cases
...
behavior for __eq__ is now following python standard, comparing to wrong
class gives False
2022-01-15 13:22:15 +01:00
3acabcdc7f
docstring adjustments
2022-01-12 23:57:21 +01:00
2c1231a806
using best practices from grid_filters
2022-01-12 23:06:48 +01:00
8de4829d0f
testing non-trivial situation
2022-01-10 08:03:37 +01:00
100565c79b
slip systems for tI (bct)
...
simple test. Not the best, but allows easy comparison with
- grep NTWINSYSTEM\ = src/lattice.f90
- grep NSLIPSYSTEM\ = src/lattice.f90
2022-01-05 08:08:10 +01:00
b2d0fd8ff5
Lambert azimuthal equal-area (laea) projection
2021-12-28 10:19:17 +00:00
2ea2930638
Merge branch 'keyword-view' into 'development'
...
using keywords instead of strings to control view
Closes #133
See merge request damask/DAMASK!484
2021-12-24 23:07:10 +00:00
dc5172ce63
don't use deprecated functions
2021-12-22 12:41:16 +01:00
c1eabc3384
simplified interface
2021-12-17 10:31:41 +01:00
0b6af19e54
use of keywords is more intuitive
...
code needs cleaning after revoming of 'what' and 'datasets'. For the
moment, keep the old style for compatibility with existing evaluation
scripts
2021-12-17 09:48:33 +01:00
2b4487f426
forgot to update test
2021-12-13 19:07:18 -05:00
2b6283bbe3
flexibility to return with alpha channel and/or as string
2021-12-10 12:53:01 -05:00
947bf946e1
added Colormap.at(fraction) to interpolate
2021-12-10 11:31:26 -05:00
fe2123bae4
2. order prismatic systems are not needed
...
not clear for which material they have been introduced, according to
T.R. Bieler and P. Eisenlohr they are typicall not active in any
material of interest
2021-12-06 12:23:24 +01:00
99166a7ce2
Merge remote-tracking branch 'origin/colormap-docstrings' into development
2021-12-03 12:18:24 +01:00
d5da47bf71
extend config init to allow YAML string and key=value pairs
2021-12-02 18:20:27 -05:00
5abfe3c214
Merge remote-tracking branch 'origin/development' into MSC-Version
2021-12-01 15:35:49 +01:00
3a51e1119b
text files on Unix should end with a new line character
2021-11-30 13:11:40 +01:00
bd908dc425
test __eq__; polish help strings
2021-11-25 13:14:34 -05:00
c23e9fb126
__eq__ not implemented
...
probably also not very much used outside tests
2021-11-23 20:34:19 +01:00
3393d32d9f
more sensible test vor sequence arguments
2021-11-23 19:42:10 +01:00
889ab87914
simplified and corrected
...
- Optional not needed for 'None' argument
- Use TextIO for typehints, TextIOWrapper seems to cause problems
- Test for tuple/list input for public functions
- internal functions that are always called with np.ndarray don't need
to offer flexibility. They might work, but we don't guarantee
anything.
2021-11-23 17:59:56 +01:00
59b6b4bb2b
Merge branch 'clean-CI' into development
2021-11-16 23:38:14 +01:00
e2e80b9706
cleaning tests
2021-11-16 11:24:04 +01:00
ec24af2403
testing new functionality
2021-11-14 11:45:13 +01:00
ddb25ad0e5
remove duplicate lattice_symmetries dictionary
2021-10-29 20:04:09 -04:00
b11a14999b
simplified lattice point data; added test
2021-09-30 11:01:42 -04:00
c7039e19b0
testing new functionality
2021-09-13 15:04:09 +02:00
0653d0c481
shortened thanks to lazy evaluation
2021-09-02 14:35:16 +02:00
727cc9da12
ready for production
2021-09-02 08:56:11 +02:00
2b9d416734
fixes for old VTK and/or old numpy
2021-09-02 08:45:20 +02:00
56c62f257a
more robust RuntimeError test; corrected name of double-defined test
2021-08-19 06:10:08 +02:00
5dbb60d338
add_pole now has option "with_symmetry"
2021-08-19 06:10:08 +02:00
b754617c76
to_pole now blends; corrected help texts
2021-08-19 06:10:08 +02:00
f3d8d78879
does not work on MacOS
2021-08-18 11:22:16 +02:00
041d3ffdd7
test more
2021-08-18 11:17:13 +02:00
5a2cd83186
recalculated with new DADF5 version
2021-08-18 10:52:47 +02:00
c5f284cd8d
increased test coverage
2021-08-18 10:44:04 +02:00
4a5e5d8451
avoid DAMASK_grid version dependency
2021-08-18 10:24:24 +02:00
81bac268f7
increasing test coverage
2021-08-18 09:36:28 +02:00
ef4e4ec772
needs to be a 2D array
2021-08-18 09:17:06 +02:00
b13e7e174b
avoid invalid DADF5
2021-08-16 21:31:17 +02:00
b1dab5f398
tests working now
2021-08-08 10:44:38 +02:00
b5be4c3fa5
compatible with material.yaml
2021-08-04 17:45:25 +02:00
dd2d569482
ensure that vectorization works
2021-07-25 21:28:35 +02:00
de428efca5
add_pole is working again
2021-07-18 18:58:05 +02:00
212a4ed63c
don't test implementation details
2021-07-18 15:57:51 +02:00
e54f032f1e
Merge remote-tracking branch 'origin/development' into restructure-Orientation-2
2021-07-18 15:09:40 +02:00
7745640393
consistently use prefix as modifier
2021-06-28 23:41:50 +02:00
0a22916aba
not a double subscript
2021-06-19 15:13:27 +02:00
abd660e62d
Merge remote-tracking branch 'origin/development' into polishing
2021-06-19 13:28:56 +02:00
71634f6ce9
split into two tests, one will fail on Ubuntu
2021-06-19 08:12:49 +02:00
56b011aa54
better have tests
2021-06-18 21:11:01 +02:00
db1882e4de
polishing
2021-06-17 18:26:37 +02:00
9b1f5c7783
testing new functionality for Neper / vti
2021-06-15 23:19:08 +02:00
218e6a79a8
VTK image data is the appropriate type, not VTK rectilinear grid
...
FFTs require constant spacing in all three directions, this is
guaranteed by the vtkImageData but not by vtkRectilinearGrid
2021-06-15 19:02:26 +02:00
5202da13ea
better not have a "Lattice" object with "lattice" parameter
2021-06-07 21:49:04 +02:00
41e5f0c06c
re-introduced multiple inheritance
2021-06-06 22:25:42 +02:00
3c8d06b6f1
encapsulating all lattice(-family) related data
2021-06-03 11:18:00 +02:00
4701eea10f
decoupling Orientation and Lattice/LatticeFamily
2021-06-03 10:02:49 +02:00
302da1f76a
separating functionality
2021-06-02 17:11:37 +02:00
b55d51491d
separating functionality
2021-06-02 08:48:45 +02:00
e281d8384f
distinguish 'family' and 'lattice'
...
this requires the user to specify a keyword ('*' notation in __init__).
Since all 'from_xxx' methods anyway require a keyword, it does not
causes much more work (one explicit keyword in case of cube orientation
when using __init__ directly).
2021-06-01 21:51:28 +02:00
684016f3e3
utility function without connection to an object
2021-06-01 21:29:35 +02:00
02256be8dc
Merge branch 'rotation-couple-kinematics' into 'development'
...
avoid static methods
See merge request damask/DAMASK!393
2021-05-31 15:55:36 +00:00
0ef5825d35
Merge branch 'Results.add_grid_filters' into 'development'
...
Result.add_xxx for functions on regular grids
See merge request damask/DAMASK!394
2021-05-31 05:46:06 +00:00
94b6be4e83
preferred way to say that something needs to be implemented
2021-05-29 10:54:34 +02:00
46dc6b4dab
functionality to add field data on regular grids
...
allows to add curl, divergence, and gradient to results from the grid
solver
2021-05-28 15:38:00 +02:00
89fc2f05cf
no need to attach static data
...
if needed, a 'kinematics' function that provides slip direction and
plane normal rotated according to the orientation would be helpful
2021-05-27 20:23:22 +02:00
bfc3fe410f
no direct connection to Orientation object
2021-05-27 19:10:23 +02:00
545a085c93
no need to hide, just add suffix to avoid clash with string argument
2021-05-27 18:41:42 +02:00
40698740aa
fixed symmetry handling
...
- ort not tested, no examples, no documentation => removed
- aP is the opposite of isotropic => removed
isostropic materials can be easily specified as cI or cF, using C_44 =
1/2 * (C_11 - C_12). Acceptable extra effort for special use case
orthorhombic can be easily implemented if needed, but needs test,
documentation, and examples
2021-05-24 15:45:25 +02:00
10c6070873
added {123} slips systems of bcc
2021-05-20 18:45:15 +02:00
85ecb68b8f
Merge remote-tracking branch 'origin/development' into MatrixInteraction_clean
2021-05-11 06:00:16 +02:00
053c427509
adjusting to new interaction matrices
2021-05-09 14:50:55 +02:00
b1ad8197f2
object oriented approach
...
Orientation (of special lattice) should not have generic attributes
Also, import at the beginning of the file
2021-04-29 20:59:54 +02:00
ff8ce3840b
handle infinite loop
2021-04-28 08:03:22 +02:00
de79d2d897
test handling of Marc results
2021-04-26 00:28:39 +02:00
62c987badf
add tracer to vtk files
2021-04-25 23:54:33 +02:00
d4a46b9be8
Merge remote-tracking branch 'origin/development' into drop-old-DADF5-support
2021-04-25 17:34:14 +02:00
0459f17f58
improved usability
2021-04-25 07:58:15 +02:00
18aa6f7f12
support for string arrays
...
allows to add phase label from mapping. Only scalar string arrays are
allowed (no real restriction)
2021-04-24 22:50:59 +02:00
3977e230b3
documenting and ensuring consistent argument names
...
'name' for a dataset matches the analogy to a file name
2021-04-24 14:47:45 +02:00
4d67c85a33
clarify out-of-place behavior and document return values
2021-04-23 23:32:09 +02:00
37df78a8e0
don't show progress bar for empty iterations
2021-04-10 15:01:50 +02:00
07d573a56d
more helpful dataset descriptors
...
phase label for single phase material not helpful
2021-04-10 09:32:21 +02:00
63b343ad87
Merge branch 'development' into allclose-rotation-orientation
2021-04-10 08:05:25 +02:00
e89236b14d
bugfix:
...
don't overwrite data when doing a 'place-like' operation to merge
datasets
2021-04-08 17:36:33 +02:00
00aed99419
naming of tests should follow naming in class
2021-04-08 13:39:48 +02:00
bc1454970c
mandatory symmetry
...
if symmetry is not of interest, damask.Rotation should be used
2021-04-06 22:49:08 +02:00
bf2515c4c1
removed `Grid.diff` in lieu of `__eq__`
2021-04-06 12:10:35 -04:00
bf4c88a39e
renamed result.read to get; polishing
2021-04-06 11:39:44 -04:00
d5806075d4
distinguish isclose/allclose and __eq__
2021-04-05 22:15:03 +02:00
115e3dd4c7
simplified
2021-04-05 17:18:12 +02:00
9db1ef9ed7
polishing
2021-04-05 13:41:49 +02:00
65b03aeb2d
Merge remote-tracking branch 'origin/development' into Results.read-.place
2021-04-05 10:22:49 +02:00
62c85db745
out of place behavior
2021-04-05 08:03:00 +02:00
e1d57f176d
simplifying
...
[] has a special meaning for glob, use () to indicate direction for IPF
color. It is anyways the sample direction, not a crystallographic
direction
2021-04-04 19:05:58 +02:00
d78e0085fc
simplified
2021-04-04 18:32:17 +02:00
6f3dc80079
simplified/using new functionality
2021-04-03 16:32:48 +02:00
1b2d892b42
keep reference folder clean
2021-04-03 07:31:31 +02:00
20d0242d59
using new logic
2021-04-02 12:21:27 +02:00
cf1ce6a1fe
support for masked array
...
masked arrays are the outcome of Result.place
2021-04-02 08:07:22 +02:00
f6d6aefe1d
function renaming; rewording of help messages
2021-04-01 18:41:28 -04:00
84e117c6b3
polished and added tests
2021-04-01 17:26:51 +02:00
4b9fcf2f77
testing new read functionality
2021-04-01 14:55:50 +02:00
85aaaa96f3
new tests
2021-04-01 10:47:45 +02:00
8a3af87e3e
Merge remote-tracking branch 'origin/development' into spring-cleaning
2021-04-01 00:09:51 +02:00
07c9cf5f1a
- improved reporting and slicing of table.
...
- implemented numpy-like `allclose` and `isclose`
2021-03-31 18:30:07 +00:00
e9c65dee73
documenting and testing
2021-03-31 10:59:21 +02:00
be9e00347b
cleaning
...
dropped support for legacy table
2021-03-27 10:11:31 +01:00
111a1a76c6
cleaning
2021-03-27 07:35:49 +01:00
9fd244d8a0
cleaning
2021-03-26 20:59:49 +01:00
9e9eb391ba
handle floating point errors
2021-03-25 22:33:14 +01:00
3b392281e4
consistent naming in HDF5 output
2021-03-25 19:22:59 +01:00
fe0cd8e5e2
transparently handle orientations/rotations
2021-03-25 15:30:31 +01:00
1ff6a09746
tests/specifications
2021-03-23 18:51:21 +01:00
572c3204d0
let the computer do the work
2021-03-23 14:28:56 +01:00
e0e088eaa8
EBSD dataset for testing
...
use only non-segmented data. Automatically fall back to numeric phase
names if cell_ensemble_data is not found
2021-03-23 13:42:04 +01:00
394fda5f37
improving import from DREAM.3D
...
- no duplicated entries even for non-segmented data
- using phase labels from file
- material.yaml: Dummy homogenization and phase
- tests to ensure correct order and match between Grid and
ConfigMaterial
2021-03-20 12:56:18 +01:00
35c5bfcc45
reference files for DREAM.3D operations
...
will be used for the configuration of material.yaml and grid (using
symbolic links)
2021-03-19 11:45:04 +01:00
a26e586b14
More general 'delete' (accepts iterables) and backports of '|' and '|=' for union/add.
...
'|=' would work for python 3.9 without extra code, but '|' unfortunately casts 'damask.Config' (subclass of 'dict') to a 'dict'.
2021-03-09 19:15:15 +00:00
175d724ded
added keepdims=False option to project_stereographic
2021-02-27 18:38:40 -05:00
ea763fd941
generalized stereographic projection to cope with all three directions (x,y,Z)
2021-02-27 11:15:01 -05:00
2549d7a05a
[skip ci] removed debug print statement
2021-02-24 15:50:06 +01:00
69316f186b
fixed ConfigMaterial.from_table; 2D grid.from_table now acceptable
2021-02-23 11:50:13 -05:00
4a00254dba
shortened material_add and allow for multi-constituent; broken from_table...
2021-02-22 22:47:08 -05:00
0461c404f7
numpy uses __array__ for casting
...
avoids infinite loop of __init__, __getitem__, and shape. Found on
8cf07f6113
2021-02-22 18:52:06 +01:00
67f0ab2ce8
silence deprecation warning
2021-02-22 08:46:28 +01:00
f609b61157
Merge branch 'development' into account-for-floating-point-precision-in-orientation
2021-02-15 16:26:25 -05:00
6bbd55d967
exchanged c for x in from_cubochoric
2021-02-15 16:25:36 -05:00
002cfbd085
Merge branch 'account-for-floating-point-precision-in-orientation' into 'development'
...
ensures that at least one orientation in the FZ is found
See merge request damask/DAMASK!337
2021-02-15 20:53:37 +00:00
fe63adcca4
mimic python error message and ensure that error is raised
2021-02-12 18:20:39 +01:00
9e8a243d6f
avoid name conflict with lattice parameter 'c'
2021-02-12 12:15:08 +01:00
4bcbcb34d0
ensures that at least one orientation in the FZ is found
2021-02-09 23:58:00 +01:00
cab5a5cec7
homogenization 'none' name misleading.
2021-02-04 15:37:40 +01:00
14ce127dc4
fraction --> v
2021-02-04 13:46:01 +01:00
d76543f759
better name
2021-01-13 14:57:58 +01:00
f4247e0f35
simpler (and scipy compatible)
2021-01-13 09:35:42 +01:00
2d6e6a2370
Rotation composition uses "*"; application of Rotation to object uses "@"; "apply()" works on both
2021-01-12 18:57:33 -05:00
f0351e403a
removed duplicate test
2021-01-07 11:01:15 -05:00
bde66d85fc
Merge branch 'development' into python-improvements
2021-01-07 10:58:33 -05:00
94cfe28128
polishing help; Rotation.apply(Rotation) now acceptable.
2021-01-06 18:03:10 -05:00
acbb564afc
restored functionalitity for adding list.
...
got accidently lost
2021-01-04 07:23:14 +01:00
d8b4b7e0f5
!= and == work componentwise
2021-01-03 21:52:19 +01:00
f48a446353
compatible with scipy.spatial.transform.Rotation
...
also introduced inplace variants and '/' as multiplicative inverse of
'*'
2021-01-03 16:08:22 +01:00
98723cb0ed
need to handle special case of Re() = 0
...
ensuring that the real part is positive seems to be a good idea on first
sight, but it would be easier to simply acknowledge that qu = -qu
2021-01-03 15:50:15 +01:00
5f1399acc3
consistent behavior with other classes
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python dictionary operates in-place, so wrappers for out-of-place
behavior let it use like the other DAMASK classes
2021-01-03 12:09:21 +01:00
6fe1ff8e39
fixed test for rodrigues parametrization
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for angle close to 180deg, the sign of the axis does not matter
2021-01-03 11:50:45 +01:00
da62daf15d
added test for appending rotation lists; better check for type==list
2020-12-28 12:26:09 -05:00
6cc78cb41e
Merge branch 'misc-improvements' into 'development'
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Misc improvements
See merge request damask/DAMASK!302
2020-12-18 15:19:04 +01:00
35f9861818
Fortran standard is 2018
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will not work for older compilers
2020-12-18 15:19:04 +01:00
403ac693da
need to pass init argument to dict superclass
2020-12-17 18:08:55 -05:00
Martin Diehl