25727bfa52
using CamelCase
2019-02-19 10:32:18 +01:00
43a451b2e1
inplace not useful
...
use shell script if you want to keep an backup of your old data
2019-02-18 14:36:04 +01:00
27ebe1f665
improved documentation
2019-02-17 08:17:40 +01:00
5c20609e81
more verbose help, drop support for really old vtk
2019-02-16 22:20:44 +01:00
802ef6fe5c
more precise help
2019-02-16 18:25:41 +01:00
c6781e415a
using default notation for vector access
2019-02-16 18:23:00 +01:00
0b1bfdfd4e
was only working with python2
2019-02-16 18:17:05 +01:00
29fc53fdcb
more specific about invocation
2019-02-16 17:41:56 +01:00
fa003e8077
small adjustments for autodoc
2019-02-16 15:26:21 +01:00
4ce151c967
camel casing (easer for foswiki)
2019-02-15 23:22:51 +01:00
0cc4e582e4
Merge branch 'development' into 26_autodoc-2
2019-02-15 20:47:14 +01:00
566099ad81
automatic documentation for some post processing scripts
2019-02-15 18:52:47 +01:00
dc133344b6
[skip ci] migrated to python3 compatibility
2019-02-14 18:44:06 -05:00
d58c3008ae
fixed too long line in addLinked
2019-02-14 18:31:22 -05:00
742d58cfce
added ASCIItable tests to CI pipelining
2019-02-14 18:24:09 -05:00
c4cb35891c
all fine with python3
2019-02-14 22:56:39 +01:00
889cfc8ba0
vtk script only work with python3 on new testing
2019-02-14 01:39:54 +01:00
217024667b
forgotten comma
2019-02-12 11:30:43 +01:00
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
7da8980cc0
bugfixes: wrong shape, wrong conversion
2019-02-12 09:04:35 +01:00
336a80091f
rodrigues is 4-vector with rotation being the last component
...
established a single source of truth for length
2019-02-12 08:59:26 +01:00
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
74956c0290
avoid error for empty "name"
2019-01-23 20:59:07 -05:00
da115ca9d4
probably never used and outdated (python2.7)
...
doing the same conversion via DREAM.3D will be available soon
2019-01-16 17:51:37 +01:00
c5dabbb68f
correct comment sign
...
the # indicates the end of a list
2019-01-09 16:31:00 +01:00
0dca8d2740
compatible to python 3 and mentat >= 2017
2019-01-09 16:28:21 +01:00
1192f16582
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2019-01-06 20:56:36 +01:00
7768c5874b
simpler interface for progress bar
2019-01-05 10:41:49 +01:00
c00d00c219
Merge remote-tracking branch 'origin/development' into misc-improvements
2019-01-05 09:22:41 +01:00
3c5df0a4a4
[skip ci] viewTable acknowledges requested output type(s)
2019-01-04 16:34:21 -05:00
bcd4288f1e
[skip ci] groupTable according to unique values in more than one column
2019-01-03 18:25:28 -05:00
b5d62c8e29
[skip ci] print estimated remaining processing time for postResults
2019-01-03 11:31:04 -05:00
835e3f95a5
[skip ci] was not used
2018-12-31 08:05:56 +01:00
6f40989465
order was randomized when creating dict
2018-12-31 07:18:45 +01:00
a992b8b1f5
random order caused test to fail
...
rather a workaround, but since HDF5 is coming...
2018-12-30 11:41:22 +01:00
9bdd4d1d68
added <!skip> line to stop config parser from trying to interpret rest of geom description---huge speedup!!
2018-12-20 17:22:29 -05:00
25a80723c0
numpy interface changed to be strict about 2D array shape in histogram
2018-12-20 17:14:55 -05:00
1ef82e351b
Merge branch 'orientationClass_with_negative_P' into development
2018-12-20 20:43:00 +01:00
7df6dfbf3f
renamed "showTable" to "viewTable" to avoid clashing with astropy.table module
2018-12-18 15:10:26 -05:00
5d7f930592
math.isclose does not exist for older versions
...
np.isclose does the same
2018-12-17 20:04:16 +01:00
3bab08fdeb
Merge branch 'development' into 56-parallel-hdf5
2018-12-12 07:46:02 +01:00
1f2fbbee21
consistent name
2018-12-10 09:38:57 +01:00
767650e002
more general option + improved descriptions
...
hopefully more user friendly
2018-12-10 09:27:39 +01:00
d219842ad8
[skip ci] consistent tolerances
2018-12-09 20:19:33 +01:00
60686fb72c
[skip ci] improved reporting
2018-12-09 18:05:37 +01:00
bc04b83d8a
no reason for using python2.7
2018-12-09 14:09:26 +01:00
08ac49fac0
line too long
2018-12-09 13:21:56 +01:00
130fac21c6
cleaning
2018-12-09 13:15:59 +01:00
d43dfa569b
lines too long
2018-12-09 12:37:27 +01:00
65165ffc5e
assumed wrong type
...
quaternion should have lenght one
2018-12-09 12:35:32 +01:00
697d97cd38
cleaned
...
legacy format was for pre-MPI output where the extra bytes at start and
end of a chunk (Fortran out) had to be handled manually
2018-12-09 12:30:07 +01:00
5054291557
python3 compatible status message
2018-12-09 12:25:31 +01:00
741032339e
time/math/datatype are not used/defined any more
2018-12-09 11:05:35 +01:00
aefa006d09
simplified
...
assume quaternions as input
2018-12-09 10:53:53 +01:00
213e31ff87
string was split into letters
2018-12-09 10:53:25 +01:00
d9b47f09bc
modernized
...
split arguments logically, assume 3-vector for coordinates
2018-12-09 10:52:37 +01:00
7eaea64d09
python3 compatible
...
hope that the new bar causes less trouble than the background message
2018-12-09 09:08:33 +01:00
6b73840853
works with python3
2018-12-09 08:07:40 +01:00
83a3628765
bug fixes
2018-12-09 07:58:42 +01:00
d145b257aa
new version of numpy complain about overlong range argument
2018-12-09 07:57:05 +01:00
4130cbcffa
simplified
...
- always use quaternion as input for orientation
- addAPS34IDEstrainCoords uses table functionality
- rotateData can figure out whether input is vector or tensor
2018-12-09 07:10:31 +01:00
3f8726464d
addOrientations now checks its input for convention conformity
2018-12-08 13:22:22 -05:00
eaf2c77903
Merge branch 'orientationClass_with_negative_P' of magit1.mpie.de:damask/DAMASK into orientationClass_with_negative_P
2018-12-07 22:07:22 -05:00
ac45a9e2d3
more output options, frame input changed to "lab expressed in crystal"
2018-12-07 22:03:14 -05:00
e8f4dc4c9f
Merge branch 'orientationClass_with_negative_P' into development
2018-12-06 07:26:08 +01:00
ee7e4ee0d9
python3 has different encoding syntax
2018-12-06 06:27:07 +01:00
a6d4c73de0
added list of map and introduced "quat" keyword in quaternion init
2018-12-05 10:20:05 -05:00
c0f7ae2798
updated scripts that still used formerly valid object properties of quaternions
2018-12-05 09:07:29 -05:00
1d7172c971
adopted more intutitive alternative of P=-1 from Rowenhorst_etal2015
2018-12-04 17:05:35 -05:00
8f26fc9358
Merge remote-tracking branch 'origin/development' into 56-parallel-hdf5
2018-12-04 22:34:29 +01:00
7c1e2e256c
os.urandom returns byte, not string in python3
2018-11-24 10:07:47 +01:00
c0ad496764
eigenvalue solver seems to depent on python version
2018-11-22 23:13:49 +01:00
76accdeaf2
all orientations are passive now
...
.conjugated() not needed anymore.
Rest is polishing
2018-11-22 18:45:01 +01:00
9b82b7fadd
removed obsolete keyword "Bunge" from asEulers() method
2018-11-22 11:51:53 -05:00
ba5b623f14
Merge branch 'development' into improved-HDF5
2018-11-18 19:44:36 +01:00
fcb14f6099
was never used
2018-11-18 12:04:08 +01:00
d53b01ab56
also works for python3
2018-11-18 08:04:52 +01:00
8ee2de61ea
map returns no list any more
2018-11-17 12:12:20 +01:00
257d9d5350
needs to be list
2018-11-17 12:12:20 +01:00
44bd85a041
not working for python3, trying
2018-11-17 12:12:20 +01:00
e1a730e96b
python3 compatible integer division and argument sequence in agreement with documentation
2018-11-17 09:58:54 +01:00
015e819d4c
python3 does not allow to compare tuple/list with int
2018-11-17 09:29:05 +01:00
82861e80bc
more python3 related changes
2018-11-17 08:46:58 +01:00
558745b548
explicitly require python3
...
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
50f880afd1
more scripts working with python3
2018-11-16 19:32:17 +01:00
4ffb4a4321
fixed several typos
2018-11-16 19:28:24 +01:00
9922f5f646
adjusted to python3
...
translate is more complicated now:
https://stackoverflow.com/questions/41708770
2018-11-16 12:23:45 +01:00
26811b74d6
known to work with python3
2018-11-16 09:18:29 +01:00
a3647cc587
more files with confirmed python3 compatibility
2018-11-16 09:03:12 +01:00
f47891e292
booleans not allowed as indeces any more
2018-11-16 09:03:12 +01:00
e9e3fef8d4
more python3 compatible scripts
2018-11-15 16:40:54 +01:00
fe2c7efa27
seem to work
2018-11-15 13:56:48 +01:00
8f80152a03
use floor division of integers
...
1/2 = 0.5 in python3 (would be 0 in python2)
2018-11-15 12:28:36 +01:00
efd29e62f7
verbose should be optional
...
- causes problems on many systems (screwed up output)
- does not work with python 3 since threading class has changed
2018-11-15 12:16:55 +01:00
0cbcb028aa
fixed problem with "ValueError: Mixing iteration and read methods would lose data" for string-containing tables
2018-10-21 15:39:30 -04:00
7480d1a842
fixes for Python3
2018-10-19 07:35:59 +02:00
a00d15b889
geom files are not labeled
2018-09-29 11:18:35 +02:00
8616a92309
unused module
2018-07-20 03:50:07 +02:00
24d1528e04
on the way to full python 3 compatibility
2018-07-20 03:31:46 +02:00
2632be2a76
polishing
2018-07-20 03:09:53 +02:00
784ae28dbb
now working with python 3
2018-07-20 00:39:50 +02:00
1f637a0c49
python3 compatible map requires conversion to list
2018-07-19 18:01:38 +02:00
0438b7113a
using util function where possible, ensuring python3 compatibility
2018-07-19 16:38:25 +02:00
f928bd5e5b
more python 3 compatibility
2018-07-19 16:26:30 +02:00
35e470ff4d
needed for python3
2018-07-19 16:19:05 +02:00
9821654aae
iteritems does not exist in python3 anymore
...
items also works for python2 (might be slower though)
2018-07-19 16:16:10 +02:00
d138993c1d
using util functionality to be compatible with python3
2018-07-19 16:12:36 +02:00
aadcd61824
polishing
2018-06-18 00:05:55 +02:00
1b12457fe6
vicinityOffset to specific triggering IDs instead of just any other ID
2018-03-30 11:48:02 -04:00
0570a49ed5
fixed broken logic of restoring and preventing immutable microstructures
2018-03-27 16:53:49 -04:00
2c3eae6bf0
fixed tests and bug for very small unit cube fractions when grid is also small
2018-03-07 18:59:27 -05:00
32c34457c2
direct selection of valid seed coordinates within subfraction of unit cube instead of check and repeat
2018-03-07 17:45:22 -05:00
1bbaa7cefe
reverted last commit, scipy.linalg is different from numpy.linalg
2018-02-26 23:50:44 +01:00
6046a7ae3d
there is no scipy.linalg (at least on my system)
...
numpy.linalg is automatically imported together with numpy
2018-02-26 20:22:57 +01:00
b078234644
added scipy and scipy.linalg as known modules for calculations
2018-02-25 14:19:22 -05:00
f5177b6d2d
[skip ci] added option for non-periodic geometries
2018-02-20 10:20:35 -05:00
2254746177
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2018-02-12 11:23:05 +01:00
9249e7db2b
Merge branch 'development' into HMS
2018-02-07 11:44:17 +01:00
ba3a4e1254
indicating vectors with 1_, ..., n_ is standard now, "euler" also (more or less)
2018-02-05 17:34:08 +01:00
e304ce35da
forgot to rename function call to read "coordGridAndSize"
2018-01-30 12:58:43 -05:00
355d576b4d
shortened code with utility function coordGridAndSize
2018-01-30 09:20:47 -05:00
710970d728
updated option --label for addCurl/Div/Grad
2018-01-29 21:27:05 -05:00
1d71a52133
further simplifcation of scripts
2018-01-29 15:10:41 -05:00
b45b43c5ac
bug fix in addCurl, simplified scripts
2018-01-29 14:12:19 -05:00
622d038932
einsum now compatible with numpy 1.14
2018-01-29 09:18:05 -05:00
30272fc355
generalized addCurl with --data instead of --tensor and --vector
2018-01-28 18:25:50 -05:00
8fb127f31c
better description of activity
2018-01-28 18:08:02 -05:00
761670f218
generalized addGradient with --data instead of --scalar and --vector
2018-01-28 18:02:35 -05:00
532d669d33
switched to more robust line based output
2018-01-27 17:45:53 -05:00
ceb0ff09e6
Subdivide vertex data with geometry when converting Marc input to VTK
2018-01-15 17:20:24 -05:00
a03bb1ec3e
Add MSC.Marc to VTK conversion support
...
marc_to_vtk.py takes Marc input file, subdivides it and creates a
vtkUnstructuredGrid .vtu file with the resulting geometry. Currently
supports hexahedron elements.
vtk_addGridData.py adds nodal/cell data to some VTK grid. It is
essentially vtk_addRectilinearGridData with support for unstructured
grid (.vtu) format, which is marc_to_vtk.py's output.
2017-12-11 12:32:38 -05:00
c33655b479
fixed pyflakes issues
2017-11-28 11:14:22 -05:00
0c8c4b54aa
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-11-28 11:12:05 -05:00
3b96fac8bd
added script to calculate numerical derivative of ASCIItable data
2017-11-28 10:59:53 -05:00
4dfb52c792
unfinished HDF5 should not be part of the next release
2017-11-21 10:23:50 +01:00
b4f4527ad1
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-11-05 08:31:59 +01:00
2b69cb8ea9
removed unnecessary liens
2017-10-24 13:23:44 +02:00
d77789b89f
minor change
2017-10-24 12:01:10 +02:00
d599aec37f
Merge branch 'development' into HMS
2017-10-24 11:24:54 +02:00
82758bd90f
added yield criterion of facet potential
2017-10-24 11:15:34 +02:00
eddc2a6acf
numpy actually not needed
2017-10-20 10:17:08 +02:00
0c24f113c1
split overlong line
2017-10-20 10:14:15 +02:00
26b8788c06
script to colocate 2D ang files into one §D file and optionally creat geometry and Paraview files
2017-10-20 09:36:57 +02:00
eda8c24b7d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-10-07 17:24:59 +02:00
14c1291046
added "--quiet" option to suppress online messaging
2017-10-03 14:03:50 -04:00
f46d721750
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-09-03 17:42:02 -07:00
64259d9239
bug fixed in whitelist sorting, more robust against numpy parsing errors
2017-08-28 19:38:14 -04:00
5b8bc65d37
exchanged string 'n/a' for 'nan' to allow smooth parsing as float value
2017-08-28 19:32:59 -04:00
9e5896a6c5
large speedup (10x) for unconditional filtering by using read/writeArray
2017-08-23 20:54:02 -04:00
fc4fb43d48
aborting when NO data columns found
2017-08-23 17:53:30 -04:00
ff072ae3c4
fixed bug (lost orgin info)
2017-08-23 15:14:22 -04:00
e82df723d1
added Rodrigues vector as possible input format
2017-08-23 14:10:56 -04:00
b3ac200c17
report linking column in screen output
2017-08-23 14:10:22 -04:00
9b6e092b5c
changed location where script appends itself to info trail
...
used to be sometimes at top, sometimes at bottom; now always after predecessor and above standard geom header
2017-08-23 14:09:33 -04:00
f825e91bf1
script to straighten numbering in geom
2017-08-23 14:08:11 -04:00
12fed7a38f
added option to use seed coordinates that are not normalized to a unit cube
2017-08-16 16:24:45 -04:00
255a465e8b
sharpened error detection and reporting
2017-08-16 15:18:29 -04:00
e18c2fd74c
slight layout tweak
2017-08-16 12:52:46 -04:00
91c70fc823
sharpened error detection and reporting
2017-08-16 12:51:32 -04:00
a2947789b5
clarified help and reporting
2017-08-15 16:12:06 -04:00
4eff7cfdd8
fixed wrong name for "pos" options destination
2017-08-15 16:11:21 -04:00
95c0179945
labeling vectors and values independenty in addSpectralDecomposition
2017-08-13 02:14:34 +02:00
e6cc948ddf
added vector-valued conditions and cleaned obsolete code
2017-08-11 15:19:47 -04:00
b7d4b3d190
simplified internal handling of conditions and added vector capability to it
2017-08-11 11:56:27 -04:00
3860eecb7c
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-08-10 11:09:37 -04:00
9bbc0d4803
implemented fast yield surface fitting with yield stop criteria
2017-08-08 17:29:14 +02:00
36c370e668
implemented fast yield surface fitting with yield stop criteria
2017-08-08 17:25:38 +02:00
1a423617c2
combined assignement of curvature exponent to deal with negative dimensions
2017-08-03 12:12:47 -04:00
84a3885af8
negated option from "voxelspace" to "realspace".
...
introduced logarithmic sense of curvature exponents, additional polishing
2017-08-03 12:08:51 -04:00
cb62066667
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-07-31 23:00:24 +02:00
68493a00f5
fixed PEP line continuation warning
2017-07-31 10:04:04 -04:00
c8222d6f82
Merge remote-tracking branch 'origin/development' into development
2017-07-31 09:51:10 -04:00
837b14592a
addLinked can now link between vector-valued columns
2017-07-31 09:34:30 -04:00
269eacb11d
added flag for skipping right-handedness check of eigenvector basis
...
separate names for min,mid,max eigvals and vecs
2017-07-28 13:44:17 -04:00
6547ab8c69
not needed, ASCII table ensures shape (Npoints,Nvalues)
2017-07-05 04:43:20 +02:00
f085f61c4d
testing hook that checks for executable bit
2017-06-02 09:25:58 +02:00
6599f7299d
correct description
2017-06-01 10:00:29 +02:00
e5af0630fe
gaussian filter (wrapper no ndimage)
2017-05-29 10:33:05 +02:00
691f338f5d
executable bit got lost
2017-05-19 09:33:58 +02:00
ed85ce5bdb
changed argument handling in line with other scripts
...
now also works with stdin/out
2017-04-28 12:36:10 +02:00
d35df1df49
Operate on MFD file to apply servo links, not client-server communication
...
Speed up by many orders of magnitude... 64 x 64 x 64 mesh less than a minute! Thanks Brendan!
2017-04-26 17:32:01 -04:00
c34716a0da
modern form of croaking, added '*draw_automatic' as final output
2017-04-14 15:07:43 -04:00
d1c2e2114d
switch auto drawing back on at end of pipeline
2017-04-13 19:00:19 -04:00
95a982e002
default type for muliple arguments (not extend) is tuple, not list
2017-04-13 12:54:26 +02:00
88809863ba
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2017-03-20 15:14:15 -04:00
66b4e24ab7
solver.Marc.version has no argument anymore
2017-03-20 15:13:54 -04:00
0d648b8de0
Change script to use resolution-independent coords
...
- Use the --voxelspace flag to get the old behavior
2017-03-07 20:37:30 -05:00
de57d9514e
removed code doubling and unused variables
2017-03-05 17:50:17 +01:00
f010aa97d9
Fix non-cube geometry structure, reduce memory
2017-02-24 22:30:04 -05:00
e5e6bed5de
Improve performance and generalize primitive shape
...
- Behavior is mostly unchanged, but the primitive may be shifted by a voxel when compared to the previous version, which had rounding issues near the edge of the primitive.
- exponent flag specifies the exponents that satisfy the equation x^e1 + y^e2 + z^e3 < 1. (1,1,1) gives an octahedron, (2,2,2) a sphere, and large values (1e10, 1e10, 1e10) gives a hexahedral box for any reasonable resolution. Mixing the two can produce a cylinder, (1e10, 2, 2) gives one with rotational symmetry about the x-axis.
2017-02-24 00:42:28 -05:00
a9d72c54b6
was not python3 conforming
2017-02-04 01:07:24 +01:00
746cb9c306
nicer code layout
2017-01-19 15:10:38 +01:00
c80b02dd72
avoid reporting "none" as STDIN filename
2017-01-19 15:10:17 +01:00
49eb7aa1be
fixed nasty ABS that caused wrong packing for 1,2,1,1,1,... and the like
2016-12-25 12:39:49 -05:00
3628deb30e
changed option name from "no-config" to more common "without-config"
2016-12-23 17:46:16 -05:00
d67be0e3f3
reduced memory footprint (substantially) by switching to 32bit precision
2016-12-08 23:36:19 -05:00
c8f321356d
prefill immutable indices with closest mutable one
...
Retain only orginially immutable locations, not those where immutability bled into.
Changed threshold for change from 0.5 to 0.95 of max diffusedEnergy.
2016-12-08 09:47:20 -05:00
9bb4f89e78
removed leftover debug output
2016-12-06 21:36:45 -05:00
Martin Diehl