47c8bfeacb
commented code
2014-10-09 11:01:07 +00:00
033a275d82
a bunch of small changes. deleted compiled FFTW libraries
2014-10-02 21:27:03 +00:00
bfe20a3af8
added $Id$ property and LF line endings.
2014-09-29 15:57:31 +00:00
f2d9d66129
improved readibility, fixed negative coordinates, improved output
2014-09-29 15:55:17 +00:00
ff475f1459
first draft of a constraint voronoi tessellation to match grain distribution
2014-09-29 10:19:49 +00:00
b85797c109
significant speed improvement for large grids.
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polished messages and fixed error reporting bug.
2014-09-24 23:47:52 +00:00
14530b0a76
fixed bug 'the table' instead of 'table'
2014-09-19 15:24:59 +00:00
afb9a2186b
removed explicit default setting: type='string' and action='store'
2014-09-12 14:14:55 +00:00
5f986f3d54
updated to contain latest python improvements
2014-09-10 16:14:37 +00:00
e286cf4c74
fixed bug "theTable" instead of "table"
2014-09-03 14:53:12 +00:00
b566eed5a8
fixed error in last commit
2014-08-28 18:50:48 +00:00
5d96f62b44
fixed bug "theTable" instead of "table"
2014-08-28 17:37:27 +00:00
d93c40a3dd
fixed small bug ('theTable' instead of 'table') and simplified
2014-08-25 12:53:11 +00:00
1ba7cbb046
fixed small bug ('theTable' instead of 'table') and simplified
2014-08-25 12:39:12 +00:00
c7837e1f66
changed manual input/output close to class method
2014-08-22 16:58:53 +00:00
9d26bfa375
try to go on despite crappy data (containing dead ends in the segment network)
2014-08-21 17:23:16 +00:00
0bcd508298
added new option "no-data" to omit output of microstructure data field, i.e. generates plain mesh only
2014-08-21 16:01:11 +00:00
b573d06c3f
fixed bug where initial microstructure array was allocated (factor 2) too large in anticipation of later 2D tiling.
2014-08-18 21:32:53 +00:00
df50707445
fixed some small flaws
2014-08-07 16:16:02 +00:00
0874ebe096
new script to name abaqus output like in for marc.
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written by B Bode from University of Kassel
2014-08-04 18:41:44 +00:00
5556dad13f
updated to latest ASCII table handling style
2014-07-28 15:34:11 +00:00
826f3d4dc7
added possibility to rotate primitives.
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better help text.
2014-07-07 17:32:37 +00:00
1ff38b98af
fixed error in file handling
2014-06-18 09:00:57 +00:00
31aded8311
no scaling of the output by size (seeds files are within 0..1)
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plus some polishing here and there
2014-06-08 12:48:32 +00:00
b0ab048d7b
now aware of "origin" keyword in seeds-file
2014-06-07 18:15:08 +00:00
e3c4e0ecfc
added option to override bounding box calculation from data with own geometry.
2014-06-07 18:14:30 +00:00
72e9c512bd
polishing of variable names, comments, and some of the programming structure.
2014-06-07 18:13:29 +00:00
522efaac92
added immutable option
2014-06-05 17:18:52 +00:00
3ec323e564
Create seed file by taking microstructure indices from given ASCIItable column.
2014-05-26 14:57:39 +00:00
f81c6f6890
changed ASCIItable reading from _asArray (deprecated) to _readArray.
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observe physical box size.
added compatibility to VTK > version 5.
2014-05-26 14:35:25 +00:00
89c896678b
added printing of cli arguments to seeds_fromRandom, fixed regression in compile_CoreModule and DAMASK_spectral_doxygen
2014-05-15 09:58:31 +00:00
8a80f5ec7a
fixed typo that prevented selection of "Moore" neighborhood.
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made "boundary" and "biplane" synonyms.
adopted more modern treatment of geom-files.
introduced scale for voxel size (independent of physical size and resolution given in geom-file).
2014-05-14 15:26:06 +00:00
8b9ed55928
small "beautification"
2014-05-13 15:03:55 +00:00
13f1607e15
changed default behavior to (system-provided) random seed instead of fixed "0"
2014-05-03 02:36:23 +00:00
a85ea307f1
changed (with backward compatibility) option "origin" to more suitable name of "center" since it specifies the position of the primitive's center, while "origin" could be mistaken for the lower left corner or such...
2014-04-09 14:22:27 +00:00
33af5af8cb
some small changes on the header/shebang
2014-04-01 19:29:14 +00:00
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
559f14ca35
prepended *draw_manual for faster processing in "new" Mentat, thx Christoph
2014-04-01 17:06:10 +00:00
c254f87814
now assuming periodic microstructures (was not fully correct before, assuming non-periodicity)
2014-04-01 16:43:39 +00:00
f19955c84a
added options to specify the columns for the grain IDs and segments
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improved error handling
2014-03-12 14:26:44 +00:00
943349fdbb
bunch of new scripts:
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gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
fdbde250dc
deleted obsolete table.data_rewind to be pipe-safe
2014-02-28 15:55:48 +00:00
9d402022aa
fixed small bug when using renumber option
2014-02-15 10:37:50 +00:00
371a027de9
added option '--renumber' to geom_rescale and geom_grainGrowth to renumber microstructures from 1 to N (without gaps), off by default.
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added metavar information to some scripts
2014-02-14 13:17:29 +00:00
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
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seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
f66c0727d0
fixed wrong type for arguments introduced last time (must be string to have multiples)
2014-02-03 20:23:49 +00:00
7a9fa061de
added --compress option: for ang files filtered to have single orientation in grain (OIM filter), microstructure and texture in material.config are compressed
2014-01-30 12:00:20 +00:00
c9c6588f7c
renamed seeds file related scripts in a (hopefully) consistent manner
2014-01-23 20:48:33 +00:00
eda9076157
use existing geom file and produce seed points from each voxel (filtering possible)
2014-01-23 20:43:42 +00:00
8b4af554ba
added verbosity on help messages
2014-01-20 14:41:56 +00:00
649b8b91fe
fixed reporting of arguments
2014-01-15 15:10:13 +00:00
db18b3c77f
added missing script arguments in documentation part of the header
2014-01-14 10:53:45 +00:00
4f30a6e05b
now compatible with new table.data_readArray method
2013-12-31 21:06:32 +00:00
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
7fb1a3130a
now VTK 6 compatible
2013-12-09 15:41:29 +00:00
0337b4f319
added script to produce VTK point cloud from seed file coordinates
2013-11-20 17:33:05 +00:00
e1e76cb257
fixed bug in OIMang_hex2cub.py, added test for correct number of microstructures (should be equal to header info)
2013-11-14 17:37:42 +00:00
d2cbca35b2
fixed syntax error in last commit
2013-11-13 12:51:48 +00:00
9b7007b937
added accidently deleted output of texturei again
2013-11-13 12:46:20 +00:00
103ae3cd0d
introduced on the fly copying for 2D microstructures in 3 dimension
2013-11-12 17:04:36 +00:00
fc8811c07d
switched to faster algorithm and removed buggy multi-threading
2013-11-11 13:00:31 +00:00
463ecfd296
switched to damask.ASCIItable parsing, now aware of synonyms in geometry header, and speed-up by some orders of magnitude due to scipy.ndimage.filters use...
2013-11-04 14:12:10 +00:00
1ff98296b3
added output of default values, still does not run for my geometry
2013-10-25 11:58:03 +00:00
5c1c0028e0
throw error if RCB segment list is not properly connected, i.e., complain about "dead ends" along the segment chain.
2013-10-24 18:55:16 +00:00
705d23a5ed
fixed bug for non-present "microstructure" info in header.
2013-10-15 12:36:52 +00:00
47577e3d11
introduced synonym "grains" for deprecated "grains" to ensure backward compatibility
2013-10-15 09:50:20 +00:00
9280b0a4e2
fixed bug where configuration wrote floating point numbers for grain IDs and texture IDs.
2013-09-23 18:35:30 +00:00
3eb8aa1362
checked for python3 compatibility:
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use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
7bbee3fe60
write size as exponential not float, otherwise small numbers get rounded (to zero)
2013-08-21 15:25:27 +00:00
4f7cd76b29
renamed texture_rotation into texture_transformation
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changed keyword for material.config to axes in line with geom_fromAng.py
former keyword rotation is still recognized for compatibility
2013-07-24 11:09:39 +00:00
d2ccc06aee
added line break between rotation and euler angle information for correct parsing of config file
2013-07-23 14:33:30 +00:00
c8cc397bf4
small bug fix
2013-07-23 12:40:26 +00:00
69b3359047
forgot in last commit
2013-07-18 13:31:40 +00:00
2201a73a46
added (?correct and working?) rotation for conversion from ANG and updated bold verbosity of all other scripts
2013-07-18 13:28:54 +00:00
7d5f1270d5
fixed nasty bug that prevented proper grid rescaling
2013-07-16 21:11:44 +00:00
cb09c17fa2
simplified $Id treatment.
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now reports own name in bold during runtime.
2013-07-10 09:15:42 +00:00
31e0469b34
changed key "grains" to "microstructures" to be consistent with .geom description later.
2013-07-10 09:14:53 +00:00
f75604c235
fixed bug in output of origin (reported size instead)
2013-07-10 09:13:21 +00:00
fafa69b846
added possibility to have microstructure indices for seed points. Hence, multiple seed points can belong to the same final grain.
2013-07-10 09:12:00 +00:00
930e605afc
bug fixes and more optimizations
2013-07-03 00:48:21 +00:00
34ef7b0f34
now fully anisotropic grain growth possible by setting up the function "interfacialEnergy"
2013-07-02 04:32:32 +00:00
5ff8a7067e
fixed bug and re-reverted to faster version. added python multiprocessing functionality. polishing and renaming
2013-07-01 17:15:24 +00:00
89cea68bc5
now using ASCIItable object and numpy array.repeat --> about 50x faster for large geoms (i.e. several mio voxels).
2013-06-30 19:11:16 +00:00
39758f5c53
removed twoD option remnants
2013-06-30 19:09:01 +00:00
1f891c544d
now using ASCIItable object (much faster file writing).
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(temporarily) switched back to rev2496 logic...
changed to diffusion distance as command line argument (instead of taking sqrt(time))
2013-06-30 13:51:21 +00:00
dd3d53e238
simplified grid/size synonyms treatment
2013-06-30 13:47:01 +00:00
21c4447955
polishing and code unifications
2013-06-30 12:35:04 +00:00
24fc14c2f3
fixed small syntax error introduced in last commit...
2013-06-30 00:46:52 +00:00
77aa1c27b0
now based on damask.ASCIItable object
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continue with next if one file is broken (used to stop!)
packing of already packed works now
overall speed improvement
standard unpacked output is 2D: use -1/--onedimensional for linear list
2013-06-30 00:39:48 +00:00
fcc2736431
now based on damask.ASCIItable object
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continue with next if one file is broken (used to stop!)
improved index substitution and adopted more numpy functions --> notably faster
2013-06-30 00:37:03 +00:00
f204c38d4d
now based on damask.ASCIItable object
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continue with next if one file is broken (used to stop!)
switched to numpy functions for geom reshaping and writing --> 10x faster
2013-06-30 00:34:16 +00:00
7d6035dcfa
now based on damask.ASCIItable object
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continue with next if one file is broken (used to stop!)
2013-06-30 00:31:44 +00:00
da1b4ff05b
now based on damask.ASCIItable object
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switched to numpy functions for grid generation --> about 20x faster.
2013-06-30 00:30:06 +00:00
4537720895
faster version for large number of grains. now performing diffusion on a small window around each grain where window around each grain is obtained cheaply
2013-06-27 16:57:14 +00:00
034a6bc926
grid dimension can be changed by factor ("2x"), or left alone with number <= 0.
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now understands packed geom structure.
2013-06-27 15:35:49 +00:00
5f347648e1
now understands packed geom structure
2013-06-27 15:34:37 +00:00
76171eec15
added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too.
2013-06-27 12:58:12 +00:00
8b5ba9f8f0
now understands packed geom-files (much faster processing...)
2013-06-21 21:19:14 +00:00
4cf2e75dc1
justification of numbers done with space instead of "0"s
2013-06-21 21:18:10 +00:00
e53c67f0e0
added black list for immutable microstructures.
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now able to parse packed geom-files.
2013-06-21 21:17:03 +00:00
3b4573301c
removed now obsolete Moore neighborhood array
2013-06-21 19:10:10 +00:00
5d15f68914
added help description.
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fixed bug for grain index (+1).
renamed some variables and added a few comments.
2013-06-21 19:08:20 +00:00
2e8756b724
faster version of smoother using the scipy gaussian filter to get the diffused microstructure and vectorized sharpening of the diffused microstructure
2013-06-21 16:59:49 +00:00
45951e27c5
script to smooth out interface roughness in a (polycrystal) geom
2013-06-20 19:45:25 +00:00
920195809c
fixed bug in auto determination of size and grid
2013-06-11 10:11:14 +00:00
e635b06270
last polishing on preprocessing scripts, documentation and scripts are all up to date.
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added addSchmidfactors to post processing scripts
2013-06-04 12:56:57 +00:00
a21dd816c7
init reporting of constitutive_*.f90 had less/to much spaces, renamed label to LABEL because it is a parameter.
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removed debug output of geom_fromEuclideanDistance.py
2013-05-28 17:31:55 +00:00
b3a90a8a3b
last changes on preprocessing tools, only documentation needs to be done
2013-05-17 16:44:03 +00:00
17b81fda7c
still improving preprocessing scripts
2013-05-15 17:23:21 +00:00
53348db000
tested the modified scripts, all scripts generating geometry now named geom_from...
2013-05-15 16:02:38 +00:00
0b4a5cfa9b
geom_check is now using vtk class, other scripts stop execution in case of invalid grid or size
2013-05-14 21:09:37 +00:00
9093cf2072
polishing, unifying,simplifying
2013-05-14 17:51:53 +00:00
2acd737859
polishing, unifying,simplifying
2013-05-14 17:19:36 +00:00
563e74c832
now also using numpy
2013-05-14 17:00:41 +00:00
b2c50124b5
more improvements on structure, comments and header generation of pre processing tools
2013-05-13 13:10:31 +00:00
52af9aaabf
made spectral preprocessing more verbose (now reporting changes on header) and aware of new keywords, added coding information below shebang
2013-05-13 11:27:59 +00:00
a003d14824
grid and size for vicinityOffset, small changes for other scripts
2013-04-25 16:51:32 +00:00
5d8664e230
updated to new keywords + more verbosity
2013-04-25 15:53:41 +00:00
7cbf107751
removed misplaced new line statement
2013-04-24 11:07:05 +00:00
aa07656a90
exchanged final two occurrences of "grains" to "microstructures"
2013-04-18 13:53:13 +00:00
d971a32516
changed keywords, now also printing out altered size/grid/microstructures information
2013-04-16 18:00:14 +00:00
2ff0f1b93e
keywords update from resolution/dimension to grid/size
2013-04-12 14:13:32 +00:00
b4f67248a5
deleted two simple scripts used for debugging but with almost no use any more
2013-04-12 13:22:15 +00:00
7bcf1d6072
added ID information of creator script to header, changed keywords (resolution->grid, dimension->size)
2013-04-12 12:48:39 +00:00
4314ab236e
added ID information of creator script to header
2013-04-12 11:15:17 +00:00
6f0308844f
geom packing/unpacking won't throw away unknown header information any more (might contain comments)
2013-04-12 10:47:44 +00:00
0b1033d63a
switched to new keywords "grid" and "size", still reads the old "resolution" and "dimension" but writes the new ones
2013-04-12 10:27:05 +00:00
010d4c6e26
added script to make 27 periodic copies (3 in each dimension)
2013-03-11 13:40:30 +00:00
8a66693001
added script to convert data used by R.A. Lebensohn to spectral solver (geom, material.config) format
2013-03-05 16:31:17 +00:00
0d7f1e8623
killed "margin" option, now same as all others: resolution and dimension in x and y.
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can be non-square grid.
2013-02-27 18:43:53 +00:00
565c532546
fixed bugs (grain index start, alpha orientation for elliptic osteons).
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added option to rotate osteon relative to periodic box.
2013-02-27 10:56:30 +00:00
1cc990c7ac
osteon geom and config generator
2013-02-25 17:12:13 +00:00
831ad6d9c8
added leading zeros to names of microstructures and phases, spaces caused problems during initialization
2013-02-20 14:50:01 +00:00
a90f15a3d3
corrected usage of "append" (which does not copy list items but only creates references)
2013-02-13 16:00:02 +00:00
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
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changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
c8aaf8f6d4
added $id flags and specified line ending types when missing.
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setup script missed ".py" extension for geom_euclideanDistance.
2013-01-18 12:59:26 +00:00
0e93d51fed
adopted same algorithm as in addEuclideanDistance
2013-01-18 11:42:27 +00:00
096204cd79
corrected missing file renaming of output
2013-01-18 11:39:53 +00:00
f63bb747c1
script to calculate the euclidean distance map (shortest distance to a grain boundary) of a given geom description using fast marching method (O(N logN) ops). grain boundary extracted using FD stencil.
2012-11-29 21:53:57 +00:00
05507a6240
removed opening of unused _tmp file
2012-11-27 17:59:56 +00:00
b5945ced5e
changed counting of rows from pythonic (starting at 0) to human way (starting at 1)
2012-11-20 10:27:09 +00:00
1df9be233d
changed default threshold to 0.0
2012-11-08 17:08:41 +00:00
025d6c9048
renamed script to new convention
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aligned output behavior to that of fromVoronoiTessellation, i.e., standard output is geom, --config gives associated material.config stud
2012-11-08 15:44:51 +00:00
af2aa8500d
added option to specify crystallite index
2012-11-08 15:43:38 +00:00
c4c27860b2
renamed script
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updated to recent standard in io processing
introduced "primitive" bicontinuous structure in addition to "diamond" and "gyroid"
2012-11-07 16:52:10 +00:00
7cf2024be3
fixed buggy parameter checking
2012-11-07 16:51:17 +00:00
e11d107956
fixed reporting to STDOUT/STDERR
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fixed buggy parameter checking
2012-11-07 16:49:47 +00:00
cfc8823328
missed those three in former commit...
2012-11-05 21:28:01 +00:00
1bd4262cfb
renaming of (loosely related) "spectral" scripts to (more tightly related) "geom" versions.
2012-11-05 21:19:12 +00:00
afaf1f4e8c
made errors report to STDERR.
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maxMicrostructure remains silent if not present.
2012-10-30 16:32:00 +00:00
Martin Diehl