Philip Eisenlohr
|
a41cd3df40
|
added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid.
|
2016-03-20 16:46:35 -04:00 |
|
Philip Eisenlohr
|
6865987ea7
|
restored option to output microstructure indices as one-dimensional list (not clear why that got lost!)
|
2016-03-20 15:01:47 -04:00 |
|
Philip Eisenlohr
|
e39441f36b
|
corrected usage message to tell about string comparison in filter condition
|
2016-03-17 19:02:30 -04:00 |
|
Aritra Chakraborty
|
0f78f1c747
|
possibility to treat floating point numbers as microstructure indices
|
2016-03-17 18:09:22 -04:00 |
|
Aritra Chakraborty
|
36c703ecd3
|
shortened excessively long lines
|
2016-03-16 15:20:31 -04:00 |
|
Aritra Chakraborty
|
3a267dc7ff
|
FFT-based gradient calculation of scalar or vector field data (sibling of addCurl and addDivergence)
|
2016-03-16 15:02:38 -04:00 |
|
Aritra Chakraborty
|
ce26ad06da
|
polishing and introduction of locally derived grid in FFT subroutine
|
2016-03-16 15:01:22 -04:00 |
|
Philip Eisenlohr
|
6197e839c9
|
fixed missing file extension when adding in-place
|
2016-03-15 14:52:10 -04:00 |
|
Martin Diehl
|
f857353e16
|
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
|
2016-03-11 12:49:47 +01:00 |
|
Martin Diehl
|
b0dedb8cbd
|
=addOrientation can do the same (and more)
|
2016-03-09 19:02:28 +01:00 |
|
Philip Eisenlohr
|
e9338200eb
|
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
|
2016-03-09 12:28:52 -05:00 |
|
Philip Eisenlohr
|
b933359f17
|
clarified text of error message complaining about wrong input dimension
|
2016-03-09 12:28:36 -05:00 |
|
Philip Eisenlohr
|
4dfd59a9e2
|
output complete microstructure and texture info instead of limiting to grainIDs used in geometry
|
2016-03-07 22:15:40 -05:00 |
|
Martin Diehl
|
f13ba71f6e
|
fixed typo
|
2016-03-04 17:24:13 +01:00 |
|
Martin Diehl
|
48233d2767
|
missing variable
|
2016-03-03 14:58:04 +01:00 |
|
Martin Diehl
|
a51f2a29f6
|
cleaning
|
2016-03-03 14:53:55 +01:00 |
|
Martin Diehl
|
76a0a93c42
|
removed unneeded variables, fixed docstrings. missing variable jc in Barlat1989 from 46c33b0
|
2016-03-03 14:52:47 +01:00 |
|
Martin Diehl
|
3ff3bb1a5b
|
pre processing finished
|
2016-03-03 14:44:51 +01:00 |
|
Martin Diehl
|
93d7643875
|
no long lines anymore and prospector is also happy
|
2016-03-03 14:44:29 +01:00 |
|
Martin Diehl
|
9fa49b8584
|
vtk files, mainly removed from vtk import *
|
2016-03-02 13:52:33 +01:00 |
|
Martin Diehl
|
f7fedc4744
|
next bunch of accepted scripts
|
2016-03-02 13:50:57 +01:00 |
|
Martin Diehl
|
3ed3073eff
|
more...
|
2016-03-02 11:29:07 +01:00 |
|
Martin Diehl
|
e89923d6d3
|
next round
|
2016-03-02 11:11:20 +01:00 |
|
Martin Diehl
|
5d7e138a9b
|
long line
|
2016-03-02 10:55:21 +01:00 |
|
Martin Diehl
|
f77de7ac6e
|
adjusting style (mainly long lines an "== None")
|
2016-03-02 10:52:24 +01:00 |
|
Martin Diehl
|
c1dd5febd5
|
some more scripts passed
|
2016-03-01 22:27:21 +01:00 |
|
Martin Diehl
|
974b8cde41
|
some more syntax improvements
|
2016-03-01 22:13:57 +01:00 |
|
Martin Diehl
|
043f2faeb3
|
line too long
|
2016-03-01 21:59:59 +01:00 |
|
Martin Diehl
|
98476ea29c
|
more improved scripts
|
2016-03-01 21:35:59 +01:00 |
|
Martin Diehl
|
9cfc27d295
|
line too long (132 lines max code, like Fortran, 159 including comments, Python standard)
|
2016-03-01 21:18:32 +01:00 |
|
Martin Diehl
|
80dc23d93d
|
following "prospector -t pep8 -t pyflakes -t dodgy -t profile-validator -t pep257"
|
2016-03-01 21:11:43 +01:00 |
|
Martin Diehl
|
e55d0ae3ca
|
further attemps to make it conform with best python practice
|
2016-03-01 20:44:43 +01:00 |
|
Martin Diehl
|
6eb170bc07
|
still struggling with prospector
|
2016-03-01 19:37:31 +01:00 |
|
Martin Diehl
|
3b33d320b1
|
getting pyflakes to ignore
|
2016-03-01 19:06:00 +01:00 |
|
Martin Diehl
|
2a50c6bf86
|
using prospector --tool=dodgy --tool=pyflakes -M to find python flaws
|
2016-03-01 18:25:14 +01:00 |
|
Martin Diehl
|
7c9d344601
|
python files now report their version depending on VERSION file in $DAMASK_ROOT
|
2016-01-27 17:06:00 +00:00 |
|
Martin Diehl
|
f693ead989
|
adding material.config to header
|
2015-12-28 16:36:26 +00:00 |
|
Martin Diehl
|
c710709b1a
|
example Makefile typically does not work, deleted
|
2015-12-15 14:34:03 +00:00 |
|
Martin Diehl
|
19ddbc9b21
|
fixed typo and simplified
|
2015-12-15 06:16:47 +00:00 |
|
Philip Eisenlohr
|
6de6b8b87f
|
fixed wrong variable name when using pre-existing microstructures from table.
added switch to skip effort for tolerance == 0.
|
2015-12-09 14:13:19 +00:00 |
|
Martin Diehl
|
d76fcb4be8
|
was giving wrong results
|
2015-12-05 21:34:39 +00:00 |
|
Martin Diehl
|
7eb7a4e8cd
|
changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered
|
2015-12-04 22:34:19 +00:00 |
|
Philip Eisenlohr
|
35202494c2
|
fixed issue caused by using -r twice as option label.
|
2015-12-04 04:33:23 +00:00 |
|
Philip Eisenlohr
|
784c78a3b0
|
removed defunct option to output labels as column vector.
|
2015-12-04 04:31:53 +00:00 |
|
Philip Eisenlohr
|
937634d703
|
added group shuffling (i.e. exchanging unique values)
|
2015-12-04 01:17:45 +00:00 |
|
Philip Eisenlohr
|
08014a7030
|
small polishing
|
2015-12-04 01:16:49 +00:00 |
|
Philip Eisenlohr
|
3fb1f02382
|
forgot $Id$ and line endings…
|
2015-12-03 22:33:38 +00:00 |
|
Philip Eisenlohr
|
2efc602854
|
Smooth geometry by selecting most frequent microstructure index within given stencil at each location.
|
2015-12-03 22:32:28 +00:00 |
|
Philip Eisenlohr
|
8f5c3b9ad7
|
small polishing.
|
2015-12-02 23:13:10 +00:00 |
|
Philip Eisenlohr
|
55b33e5597
|
added option “inplace” to directly modify VTK file instead of creating copy_added.
|
2015-12-02 23:10:14 +00:00 |
|
Martin Diehl
|
f49091c952
|
addDeformedConfiguration without core module
|
2015-12-02 20:53:02 +00:00 |
|
Martin Diehl
|
6ecbd3ae56
|
makefile had problems with static flag, mentat spectral Box was still using table.croak
|
2015-12-02 20:02:19 +00:00 |
|
Martin Diehl
|
0ffcb7fdaf
|
cleaning
|
2015-12-01 16:37:20 +00:00 |
|
Martin Diehl
|
f61f87e6d0
|
updated reference results (visual impression much better now) for geom_fromTable and silenced verbose debug output per default since it's causing problems when piping to file
|
2015-11-30 16:22:59 +00:00 |
|
Philip Eisenlohr
|
cee9a345b7
|
added option to label microstructure.
updated to most recent asciitable/damask.util infrastructure.
|
2015-11-20 16:30:55 +00:00 |
|
Philip Eisenlohr
|
0db4a7fad0
|
added debug messages.
added background message for estimated time (+ grain info).
fixed functionality—finally works as intended (lump orientations within threshold).
|
2015-11-20 16:27:57 +00:00 |
|
Martin Diehl
|
40c2a5dd6d
|
differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though
|
2015-11-20 15:58:32 +00:00 |
|
Martin Diehl
|
24382ed827
|
unified options to enable automated parsing for documentation
|
2015-11-16 10:52:56 +00:00 |
|
Martin Diehl
|
1336c8d0e6
|
now using default 2D output for geometry
|
2015-11-16 09:54:39 +00:00 |
|
Martin Diehl
|
302178ebb4
|
some trouble since clean was already in PETSc rules
|
2015-11-14 09:47:18 +00:00 |
|
Philip Eisenlohr
|
4c51c15795
|
changed option to —coordinates.
gracefully extend points to be 3D.
|
2015-11-14 01:52:31 +00:00 |
|
Martin Diehl
|
4b85941a94
|
some comments
|
2015-11-11 19:51:34 +00:00 |
|
Martin Diehl
|
4ca566efa8
|
geom_rotate: rotates a geometry
|
2015-11-11 19:51:17 +00:00 |
|
Philip Eisenlohr
|
2c9f9981e2
|
polishing of addRectiliearGridData.
subsumed functionality of addVoxelgridData into it.
|
2015-11-10 01:49:32 +00:00 |
|
Philip Eisenlohr
|
434bf2413e
|
simplified if—else with a = b if c else d
|
2015-11-10 01:35:26 +00:00 |
|
Philip Eisenlohr
|
ccf7530121
|
added output selection “rodrigues”
|
2015-11-10 01:34:10 +00:00 |
|
Chen Zhang
|
fe1dbf2ea0
|
output file name now contains both position and mode.
e.g. ${prefix}_ipinitialcoord(point).vtr
|
2015-11-03 21:44:36 +00:00 |
|
Philip Eisenlohr
|
ad06fc1a77
|
fixed buggy mapIncremental behavior for anything else than averaging (the standard case luckily…)
|
2015-10-27 20:16:24 +00:00 |
|
Martin Diehl
|
072be9c1bb
|
help now working if no mentat release present.
improved style
|
2015-10-26 19:34:44 +00:00 |
|
Martin Diehl
|
41f1994569
|
new style and test for grain growth
|
2015-10-26 17:59:36 +00:00 |
|
Martin Diehl
|
ebf20f2ebc
|
unified style and other minor improvements
|
2015-10-15 19:51:27 +00:00 |
|
Martin Diehl
|
e72ae63873
|
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
|
2015-10-14 21:35:56 +00:00 |
|
Martin Diehl
|
dd0167821f
|
corrected reporting and convergence check
|
2015-10-14 20:33:22 +00:00 |
|
Martin Diehl
|
bdfd9c69bb
|
simplified dimension handling
|
2015-10-14 18:45:33 +00:00 |
|
Martin Diehl
|
46564d3df8
|
commenting and introducing functions for regulary used code
|
2015-10-14 18:40:02 +00:00 |
|
Martin Diehl
|
180d4625c1
|
trying to simplify
|
2015-10-13 21:00:12 +00:00 |
|
Martin Diehl
|
8fac635c15
|
made hybridIA stuff working again
|
2015-10-13 17:02:07 +00:00 |
|
Martin Diehl
|
f1482a2af4
|
fixed buggy behavior in case of non unit-sized geometry
|
2015-10-12 18:10:26 +00:00 |
|
Aritra Chakraborty
|
723f135177
|
can now handle tiling of values (scalar [string,number] spread out to vector and such)
|
2015-10-09 14:22:41 +00:00 |
|
Philip Eisenlohr
|
196afb9b31
|
adopted change in named argument (strict -> SST) for disorientation
|
2015-10-09 13:06:51 +00:00 |
|
Martin Diehl
|
fc9d290339
|
unified structure and names, added test for vtk{point/voxel}cloud
|
2015-10-09 11:24:26 +00:00 |
|
Martin Diehl
|
8fe443d068
|
clearer naming
|
2015-10-09 06:26:18 +00:00 |
|
Martin Diehl
|
61090c955d
|
removed code doubling
|
2015-10-09 05:51:58 +00:00 |
|
Martin Diehl
|
6d74cbf374
|
simpliefied scripts for vtk generation and introduce simple test to check if they run
|
2015-10-08 21:30:33 +00:00 |
|
Martin Diehl
|
fd04e0763b
|
legacy code geom... can be achieved by combining voronoi tesselation and geom_rescale, for ipfs can be plotted from ascii table with matlab
|
2015-10-08 17:41:35 +00:00 |
|
Martin Diehl
|
127c03c525
|
unneeded module
|
2015-10-06 19:29:32 +00:00 |
|
Martin Diehl
|
1bd8167445
|
requires core module and is most likely not used.
When needed, a Complete, lean redesign is simpler than updating to current coding style
|
2015-10-06 18:11:58 +00:00 |
|
Martin Diehl
|
f014cef043
|
improved performance for non-weighted Voronoi Tessellation
|
2015-10-06 18:03:06 +00:00 |
|
Aritra Chakraborty
|
22048cb546
|
fixed a bug
|
2015-10-02 01:59:59 +00:00 |
|
Philip Eisenlohr
|
2c6a6f6530
|
fixed bug.
introduced possibility for poke bounding box in all dimensions.
|
2015-10-02 00:21:23 +00:00 |
|
Philip Eisenlohr
|
a2a7664e8e
|
default to 0–1 for z range
|
2015-09-29 22:35:57 +00:00 |
|
Philip Eisenlohr
|
21bcafe3e4
|
seeds coordinates now rescaled to proper box size.
|
2015-09-29 22:27:46 +00:00 |
|
Philip Eisenlohr
|
863fe5ddf0
|
needs modules “math” and “random” for user-supplied conditions…
(do not remove through pyflakes—shall we introduce dummy code to keep the modules “active”?)
|
2015-09-29 22:27:07 +00:00 |
|
Harsha Phukan
|
202ee00049
|
Eliminated redundant searches for similar orientations in neighboring points…speeds up script by 2 orders of magnitude
|
2015-09-28 19:03:24 +00:00 |
|
Martin Diehl
|
55dc2b419a
|
warn if unexpected file size is encoutered
|
2015-09-24 17:07:27 +00:00 |
|
Martin Diehl
|
4ead24a134
|
more tests
|
2015-09-24 16:52:58 +00:00 |
|
Martin Diehl
|
f4c53e0be8
|
removed warnings by pyflakes, implemented new croak functionality
|
2015-09-24 15:34:27 +00:00 |
|
Martin Diehl
|
e1157126bc
|
cleaned with pyflakes, added test for seed generation
|
2015-09-24 13:21:44 +00:00 |
|
Martin Diehl
|
f4d4a8e1ec
|
adopted philips changes for reporting, using pyflakes to clean up
|
2015-09-24 09:24:42 +00:00 |
|
Tias Maiti
|
3c901e5549
|
added option for Euler angle output in degrees
|
2015-09-23 23:05:28 +00:00 |
|
Chen Zhang
|
3fa0312087
|
update usage of asciitable to new interface
|
2015-09-23 19:20:18 +00:00 |
|
Martin Diehl
|
42ac7902f7
|
indents wrong in fortran, seeds_fromDistribution bugfix and using ASCII table facilities
|
2015-09-20 21:03:10 +00:00 |
|
Martin Diehl
|
666b438e6a
|
using ASCII table
|
2015-09-18 16:12:27 +00:00 |
|
Martin Diehl
|
6a3a0f3859
|
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
|
2015-09-16 19:44:11 +00:00 |
|
Harsha Phukan
|
fb48719283
|
fixed critical bugs
|
2015-09-15 19:02:59 +00:00 |
|
Martin Diehl
|
6f20651250
|
copy and paste error and new interface for test
|
2015-09-12 19:29:34 +00:00 |
|
Aritra Chakraborty
|
6683c1fb73
|
fixed a bug
|
2015-09-12 16:34:31 +00:00 |
|
Martin Diehl
|
0c7f4e690a
|
fixed reference, still not 100% sure if everything is correct, but apparently the test never run
|
2015-09-12 16:30:28 +00:00 |
|
Martin Diehl
|
c53bf02fea
|
changed back to old behavior
|
2015-09-11 15:38:03 +00:00 |
|
Martin Diehl
|
5f9fae1b75
|
simplified reporting using "emph"
|
2015-09-11 12:55:43 +00:00 |
|
Philip Eisenlohr
|
c69e7ec149
|
switched conjugation to apply to symmetric equivalents instead of incoming quaternion.
passing-down of degree option handled directly.
|
2015-09-09 22:43:56 +00:00 |
|
Philip Eisenlohr
|
e0d5cef047
|
Script to merge multiple ASCIItables. Stops at end of shortest one.
|
2015-09-09 22:22:29 +00:00 |
|
Martin Diehl
|
70f906a2c4
|
follow new syntax and bugfix, marc 2014 is default
|
2015-09-09 16:45:49 +00:00 |
|
Tias Maiti
|
c9dcb41bac
|
fixed sorting logic to respect numerical values of vector data (i.e. 1,2,3,….,10,11,… instead of 10,11,12,1,2,…)
|
2015-09-08 23:55:44 +00:00 |
|
Martin Diehl
|
1c164574ac
|
more fixes following new possibilities of ascii table
|
2015-09-08 19:42:14 +00:00 |
|
Martin Diehl
|
4e9b27b0ce
|
failure in last commit, using standard keyword eulerangles instead of eulers
|
2015-09-08 18:48:58 +00:00 |
|
Noriki Fujita
|
c2d27d56fa
|
updated to new ASCII table style
|
2015-09-08 15:26:40 +00:00 |
|
Noriki Fujita
|
9a2c49ff50
|
corrected label header
|
2015-09-08 13:45:46 +00:00 |
|
Martin Diehl
|
dad0fdfb85
|
still needed
|
2015-09-05 14:59:52 +00:00 |
|
Martin Diehl
|
45a3568b40
|
bugfix for last commit
|
2015-09-05 14:46:57 +00:00 |
|
Martin Diehl
|
cf90b764f8
|
calculation was for nyquist freq not fully correct.
See Notes on FFT-based differentiation
Steven G. Johnson, MIT Applied Mathematics
Created April, 2011, updated May 4, 2011:
|
2015-09-05 11:51:36 +00:00 |
|
Martin Diehl
|
08f8746182
|
made some more scripts working again
|
2015-08-31 21:22:44 +00:00 |
|
Philip Eisenlohr
|
8ff79e1eb0
|
NaN now considered transparent
|
2015-08-31 17:41:00 +00:00 |
|
Philip Eisenlohr
|
8f79744f2c
|
now works with (rounded) floating point numbers as mapping indices
|
2015-08-31 16:01:11 +00:00 |
|
Martin Diehl
|
6100185855
|
switch to new ASCII table class was buggy, using damask.util.emph
|
2015-08-31 11:00:45 +00:00 |
|
Aritra Chakraborty
|
115518a2c8
|
minor changes in commit and setting the script ID properly
|
2015-08-29 15:10:43 +00:00 |
|
Aritra Chakraborty
|
cff6307779
|
Update existing value(s) to expression(s) respecting condition.
|
2015-08-29 00:54:45 +00:00 |
|
Chen Zhang
|
b4768013a0
|
fix output error in output geom file.
|
2015-08-26 16:39:33 +00:00 |
|
Philip Eisenlohr
|
d8afe9be23
|
Add scalars, vectors, and/or an RGB tuple from an ASCIItable to existing VTK rectilinear grid (.vtr/.vtk).
|
2015-08-25 00:39:37 +00:00 |
|
Aritra Chakraborty
|
cec6d7d220
|
for generating rectilinear grid of either cell type or point type from ASCII table.
|
2015-08-24 20:48:50 +00:00 |
|
Philip Eisenlohr
|
7961b486cb
|
now compatible with updated Orientation.disorientation() output, i.e., select item [0] (the quaternion).
|
2015-08-24 14:20:09 +00:00 |
|
Philip Eisenlohr
|
c215139ce1
|
now works with recent changes of ASCIItable and with STDIN to STDOUT.
|
2015-08-24 14:01:24 +00:00 |
|
Philip Eisenlohr
|
afc88c7029
|
now works with recent changes of ASCIItable.
|
2015-08-24 13:42:29 +00:00 |
|
Philip Eisenlohr
|
38992fdc37
|
now use outsourced damask.util methods
|
2015-08-23 23:19:40 +00:00 |
|
Philip Eisenlohr
|
00b8660203
|
redundant.
functionality available in “geom_fromTable”…
|
2015-08-20 19:46:11 +00:00 |
|
Philip Eisenlohr
|
c85306257d
|
redundant.
improved functionality now via “ang_toTable” and “geom_fromTable”…
|
2015-08-20 19:44:17 +00:00 |
|
Philip Eisenlohr
|
63d5506388
|
adopting further simplifications provided through ASCIItable class.
|
2015-08-20 19:42:05 +00:00 |
|
Philip Eisenlohr
|
9439cf7278
|
add cumulative (first to current) values of given labels to table
|
2015-08-20 19:40:45 +00:00 |
|
Philip Eisenlohr
|
05a8124d82
|
simplified rescaling interpretation
|
2015-08-19 18:30:50 +00:00 |
|
Martin Diehl
|
2a13d78196
|
did not run
|
2015-08-18 17:24:15 +00:00 |
|
Martin Diehl
|
324c5b36d3
|
restructured to get help even without mentat release
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2015-08-18 16:39:47 +00:00 |
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Philip Eisenlohr
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70daa8663f
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adoption of new ASCIItable API
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2015-08-18 14:37:32 +00:00 |
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Martin Diehl
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ca1fe6bb82
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updated to new ASCII table style
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2015-08-18 07:56:03 +00:00 |
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Tias Maiti
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d0b75b5a10
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fixed table.croak error in last commit
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2015-08-18 04:41:36 +00:00 |
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Tias Maiti
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befd6aa7ff
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fixed stderr output (croaking..) as per new ASCII table style
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2015-08-18 04:33:45 +00:00 |
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Tias Maiti
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419a612d0e
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updated to new ASCII table style
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2015-08-18 04:32:19 +00:00 |
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Aritra Chakraborty
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ac7f443595
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adopted new ASCIItable API
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2015-08-13 21:25:08 +00:00 |
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Martin Diehl
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7ca1e77495
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bug fixing
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2015-08-13 08:32:09 +00:00 |
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Philip Eisenlohr
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f982f42839
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convert TSL/EDAX ang file format to proper ASCIItable.
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2015-08-12 22:14:19 +00:00 |
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Philip Eisenlohr
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1976cf44c1
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fixed os.path.splitext bug when using STDIN input
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2015-08-12 21:56:37 +00:00 |