Martin Diehl
69b8e02a3a
removed unwanted ASCII table data rewind causing problem for STDIN
2015-03-26 21:15:59 +00:00
Martin Diehl
643f7fe934
some comments
2015-03-26 05:04:12 +00:00
Franz Roters
4b19b74d11
number of intervals is limit/delta not limit/delta -1
2015-03-13 08:39:55 +00:00
Haiming Zhang
37e40fdf79
Keep consistent with the new file: example.linearODF
2015-03-06 16:21:05 +00:00
Haiming Zhang
5d9abc16e8
the number of grains starts with one.
2015-03-05 20:16:17 +00:00
Haiming Zhang
aeb468254d
missing file.close()
2015-03-05 19:12:07 +00:00
Haiming Zhang
4579a696e8
use OptionParse to parse the command-line options, add help information,
...
add the output of material.config file.
2015-03-05 19:01:31 +00:00
Haiming Zhang
d188f35c17
use OptionParse to parse the command-line options, add help information, format the header of output file, now the output file can be used by hydribIA_linODFsampling.py directly
2015-03-05 17:04:16 +00:00
Martin Diehl
f1df6cf40f
copied some stcopied some scripts from the Code folder that are of interest for DAMASK
2015-03-05 10:05:00 +00:00
Chen Zhang
8c91d174fa
remove some debugging print;
...
add meshgrid2, but stick with list comprehension since it is actually faster.
2015-03-02 16:20:47 +00:00
Tias Maiti
0077177c05
some polishing (numpy —> np, theTable —> table)
2015-03-02 05:06:29 +00:00
Chen Zhang
0d7355a49f
correct help information.
2015-02-27 23:08:48 +00:00
Chen Zhang
1742725963
interpolate microstructure using Delaunay triangulation and Barycentric interpolation.
2015-02-27 22:59:09 +00:00
Martin Diehl
425251ae2b
fixed bug: theTable -> table
2015-02-14 11:23:50 +00:00
Martin Diehl
40a792d785
fixed bug in consistency check
2015-02-10 13:49:47 +00:00
Martin Diehl
63434c2ddb
corrected error checking for correct type
2015-02-09 08:57:14 +00:00
Martin Diehl
7edd209ce4
corrected wrong name in add..., more verbose error checking for geom_from...
2015-02-07 22:22:28 +00:00
Martin Diehl
e4a94aa72b
put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance
2015-02-07 17:11:46 +00:00
Martin Diehl
4772efbc45
fixed syntax error
2015-01-23 10:11:12 +00:00
Martin Diehl
440263f2f0
simplified, removed deprecated synonyms
2015-01-22 09:03:18 +00:00
Martin Diehl
ed6b4fe50a
fixed issues when having grains and eulers
2015-01-13 16:04:49 +00:00
Martin Diehl
8dea16c07f
fixed wrong assignment of phase and made orientation comparison robust
2014-12-20 12:42:21 +00:00
Martin Diehl
9ac62e42df
added possibility to specify number of bins to be sorted in advance to current cleared stage
2014-12-18 18:03:36 +00:00
Martin Diehl
f8ce57abc8
removed aliases 'resolution' and 'dimension' for 'grid' and 'size' because some scripts did not have it anyway and the rename happened quite a while ago
2014-12-08 08:48:55 +00:00
Martin Diehl
c067d0dc69
fixed wrong periodicity treatment
2014-12-05 10:35:56 +00:00
Luv Sharma
30920801aa
extended for 2D, finds the bounding edges and assigns them 'physical' attribute.
2014-12-04 11:33:06 +00:00
Martin Diehl
47685ac7c4
added output of script ID do material.config
2014-12-03 10:09:47 +00:00
Martin Diehl
590106b889
added possibility to add randomly distributed second phase (index = indexGiven+1)
2014-12-02 22:22:11 +00:00
Philip Eisenlohr
3cfabe3b83
standardized script name reporting
2014-11-18 15:31:39 +00:00
Martin Diehl
b656113b11
added missing string import in marc_addUserOutput (introduced with rev 3718) and removed unwanted imports and introduce use of damask.extendableParser in some other scripts
2014-11-18 08:00:45 +00:00
Martin Diehl
409a75c964
fixed 2 small flaws in geom_fromAng, corrected stringID and stringName in all remaining files in 'pre'
2014-11-16 21:44:46 +00:00
Philip Eisenlohr
6a3546cee2
script to produce ASCIItable from geom dataset.
...
contains best-practice for looping over multiple input files (to avoid error caused by too many open file handles!)
2014-11-14 15:16:00 +00:00
Philip Eisenlohr
deee3a175a
polishing and simplifications
2014-11-14 14:53:48 +00:00
Martin Diehl
733e85f6e6
fixed bug in material.config when do not compress the data. Thanks to Noriki for figuring out
2014-11-14 13:53:55 +00:00
Martin Diehl
2d2eb4e001
using extendable option, numpy as np, etc.
2014-11-07 11:13:14 +00:00
Martin Diehl
047042ad9f
using extendable option, numpy as np, etc.
2014-11-07 11:07:03 +00:00
Tias Maiti
7d6670d4cf
fixed table —> theTable flaw in output finalization
2014-11-05 22:17:06 +00:00
Philip Eisenlohr
52160385a6
alternative expression to parse script filename (scriptID excluding file extension).
2014-11-05 22:05:37 +00:00
Philip Eisenlohr
9345640dfd
mainly polished for “numpy as np”. added alternative expression to parse script filename (excluding file extension).
2014-11-05 22:04:59 +00:00
Philip Eisenlohr
35f8b9786e
changed way to sample grid positions when placing primitive object. Should be somewhat more efficient now.
2014-11-05 22:02:40 +00:00
Philip Eisenlohr
f7da804927
changed file handling to allow for serial processing of large file numbers.
2014-11-05 22:01:11 +00:00
Pratheek Shanthraj
e779c2e1e6
specify mesh size
2014-10-21 14:42:13 +00:00
Pratheek Shanthraj
975e42b132
specify which surface(s) you want to tag
2014-10-21 13:57:17 +00:00
Luv Sharma
8dd575cdbe
now making use of parser options for input arguments
2014-10-17 11:51:22 +00:00
Luv Sharma
0193578540
now appending the bounding surface information to the gmsh geometry file
2014-10-16 17:23:17 +00:00
Luv Sharma
7e0c6f420b
added shebang script to make executable, some properties and few improvements. Now giving the bounding surfaces.
2014-10-16 15:53:46 +00:00
Luv Sharma
ff0f619015
started to write a script for finding bounding surfaces from gmsh geo file.
2014-10-16 14:07:25 +00:00
Martin Diehl
5e16cdd14f
added support for multiple entries per line
2014-10-13 13:58:26 +00:00
Martin Diehl
e1530afac7
test for geom_fromTable (does not work for empty black or whitelist)
2014-10-13 09:54:01 +00:00
Martin Diehl
f4de982182
svn caused trouble due to rename, again some missing files
2014-10-10 12:11:10 +00:00
Martin Diehl
46d67f63d8
added test for converter from Ricardo's files
2014-10-10 08:54:48 +00:00
Martin Diehl
57e522566a
updated python style
2014-10-09 17:03:06 +00:00
Martin Diehl
47c8bfeacb
commented code
2014-10-09 11:01:07 +00:00
Martin Diehl
033a275d82
a bunch of small changes. deleted compiled FFTW libraries
2014-10-02 21:27:03 +00:00
Philip Eisenlohr
bfe20a3af8
added $Id$ property and LF line endings.
2014-09-29 15:57:31 +00:00
Martin Diehl
f2d9d66129
improved readibility, fixed negative coordinates, improved output
2014-09-29 15:55:17 +00:00
Martin Diehl
ff475f1459
first draft of a constraint voronoi tessellation to match grain distribution
2014-09-29 10:19:49 +00:00
Philip Eisenlohr
b85797c109
significant speed improvement for large grids.
...
polished messages and fixed error reporting bug.
2014-09-24 23:47:52 +00:00
Tias Maiti
14530b0a76
fixed bug 'the table' instead of 'table'
2014-09-19 15:24:59 +00:00
Martin Diehl
afb9a2186b
removed explicit default setting: type='string' and action='store'
2014-09-12 14:14:55 +00:00
Martin Diehl
5f986f3d54
updated to contain latest python improvements
2014-09-10 16:14:37 +00:00
Tias Maiti
e286cf4c74
fixed bug "theTable" instead of "table"
2014-09-03 14:53:12 +00:00
Tias Maiti
b566eed5a8
fixed error in last commit
2014-08-28 18:50:48 +00:00
Tias Maiti
5d96f62b44
fixed bug "theTable" instead of "table"
2014-08-28 17:37:27 +00:00
Martin Diehl
d93c40a3dd
fixed small bug ('theTable' instead of 'table') and simplified
2014-08-25 12:53:11 +00:00
Martin Diehl
1ba7cbb046
fixed small bug ('theTable' instead of 'table') and simplified
2014-08-25 12:39:12 +00:00
Martin Diehl
c7837e1f66
changed manual input/output close to class method
2014-08-22 16:58:53 +00:00
Philip Eisenlohr
9d26bfa375
try to go on despite crappy data (containing dead ends in the segment network)
2014-08-21 17:23:16 +00:00
Philip Eisenlohr
0bcd508298
added new option "no-data" to omit output of microstructure data field, i.e. generates plain mesh only
2014-08-21 16:01:11 +00:00
Tias Maiti
b573d06c3f
fixed bug where initial microstructure array was allocated (factor 2) too large in anticipation of later 2D tiling.
2014-08-18 21:32:53 +00:00
Martin Diehl
df50707445
fixed some small flaws
2014-08-07 16:16:02 +00:00
Martin Diehl
0874ebe096
new script to name abaqus output like in for marc.
...
written by B Bode from University of Kassel
2014-08-04 18:41:44 +00:00
Tias Maiti
5556dad13f
updated to latest ASCII table handling style
2014-07-28 15:34:11 +00:00
Philip Eisenlohr
826f3d4dc7
added possibility to rotate primitives.
...
better help text.
2014-07-07 17:32:37 +00:00
Martin Diehl
1ff38b98af
fixed error in file handling
2014-06-18 09:00:57 +00:00
Philip Eisenlohr
31aded8311
no scaling of the output by size (seeds files are within 0..1)
...
plus some polishing here and there
2014-06-08 12:48:32 +00:00
Philip Eisenlohr
b0ab048d7b
now aware of "origin" keyword in seeds-file
2014-06-07 18:15:08 +00:00
Philip Eisenlohr
e3c4e0ecfc
added option to override bounding box calculation from data with own geometry.
2014-06-07 18:14:30 +00:00
Philip Eisenlohr
72e9c512bd
polishing of variable names, comments, and some of the programming structure.
2014-06-07 18:13:29 +00:00
Pratheek Shanthraj
522efaac92
added immutable option
2014-06-05 17:18:52 +00:00
Philip Eisenlohr
3ec323e564
Create seed file by taking microstructure indices from given ASCIItable column.
2014-05-26 14:57:39 +00:00
Philip Eisenlohr
f81c6f6890
changed ASCIItable reading from _asArray (deprecated) to _readArray.
...
observe physical box size.
added compatibility to VTK > version 5.
2014-05-26 14:35:25 +00:00
Martin Diehl
89c896678b
added printing of cli arguments to seeds_fromRandom, fixed regression in compile_CoreModule and DAMASK_spectral_doxygen
2014-05-15 09:58:31 +00:00
Philip Eisenlohr
8a80f5ec7a
fixed typo that prevented selection of "Moore" neighborhood.
...
made "boundary" and "biplane" synonyms.
adopted more modern treatment of geom-files.
introduced scale for voxel size (independent of physical size and resolution given in geom-file).
2014-05-14 15:26:06 +00:00
Philip Eisenlohr
8b9ed55928
small "beautification"
2014-05-13 15:03:55 +00:00
Philip Eisenlohr
13f1607e15
changed default behavior to (system-provided) random seed instead of fixed "0"
2014-05-03 02:36:23 +00:00
Philip Eisenlohr
a85ea307f1
changed (with backward compatibility) option "origin" to more suitable name of "center" since it specifies the position of the primitive's center, while "origin" could be mistaken for the lower left corner or such...
2014-04-09 14:22:27 +00:00
Martin Diehl
33af5af8cb
some small changes on the header/shebang
2014-04-01 19:29:14 +00:00
Martin Diehl
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
Claudio Zambaldi
559f14ca35
prepended *draw_manual for faster processing in "new" Mentat, thx Christoph
2014-04-01 17:06:10 +00:00
Martin Diehl
c254f87814
now assuming periodic microstructures (was not fully correct before, assuming non-periodicity)
2014-04-01 16:43:39 +00:00
Christoph Kords
f19955c84a
added options to specify the columns for the grain IDs and segments
...
improved error handling
2014-03-12 14:26:44 +00:00
Philip Eisenlohr
943349fdbb
bunch of new scripts:
...
gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
Philip Eisenlohr
fdbde250dc
deleted obsolete table.data_rewind to be pipe-safe
2014-02-28 15:55:48 +00:00
Martin Diehl
9d402022aa
fixed small bug when using renumber option
2014-02-15 10:37:50 +00:00
Martin Diehl
371a027de9
added option '--renumber' to geom_rescale and geom_grainGrowth to renumber microstructures from 1 to N (without gaps), off by default.
...
added metavar information to some scripts
2014-02-14 13:17:29 +00:00
Philip Eisenlohr
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
...
seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
Martin Diehl
f66c0727d0
fixed wrong type for arguments introduced last time (must be string to have multiples)
2014-02-03 20:23:49 +00:00
Martin Diehl
7a9fa061de
added --compress option: for ang files filtered to have single orientation in grain (OIM filter), microstructure and texture in material.config are compressed
2014-01-30 12:00:20 +00:00
Philip Eisenlohr
c9c6588f7c
renamed seeds file related scripts in a (hopefully) consistent manner
2014-01-23 20:48:33 +00:00
Philip Eisenlohr
eda9076157
use existing geom file and produce seed points from each voxel (filtering possible)
2014-01-23 20:43:42 +00:00
Martin Diehl
8b4af554ba
added verbosity on help messages
2014-01-20 14:41:56 +00:00
Luv Sharma
649b8b91fe
fixed reporting of arguments
2014-01-15 15:10:13 +00:00
Martin Diehl
db18b3c77f
added missing script arguments in documentation part of the header
2014-01-14 10:53:45 +00:00
Philip Eisenlohr
4f30a6e05b
now compatible with new table.data_readArray method
2013-12-31 21:06:32 +00:00
Martin Diehl
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
Philip Eisenlohr
7fb1a3130a
now VTK 6 compatible
2013-12-09 15:41:29 +00:00
Philip Eisenlohr
0337b4f319
added script to produce VTK point cloud from seed file coordinates
2013-11-20 17:33:05 +00:00
Martin Diehl
e1e76cb257
fixed bug in OIMang_hex2cub.py, added test for correct number of microstructures (should be equal to header info)
2013-11-14 17:37:42 +00:00
Martin Diehl
d2cbca35b2
fixed syntax error in last commit
2013-11-13 12:51:48 +00:00
Martin Diehl
9b7007b937
added accidently deleted output of texturei again
2013-11-13 12:46:20 +00:00
Martin Diehl
103ae3cd0d
introduced on the fly copying for 2D microstructures in 3 dimension
2013-11-12 17:04:36 +00:00
Pratheek Shanthraj
fc8811c07d
switched to faster algorithm and removed buggy multi-threading
2013-11-11 13:00:31 +00:00
Philip Eisenlohr
463ecfd296
switched to damask.ASCIItable parsing, now aware of synonyms in geometry header, and speed-up by some orders of magnitude due to scipy.ndimage.filters use...
2013-11-04 14:12:10 +00:00
Martin Diehl
1ff98296b3
added output of default values, still does not run for my geometry
2013-10-25 11:58:03 +00:00
Philip Eisenlohr
5c1c0028e0
throw error if RCB segment list is not properly connected, i.e., complain about "dead ends" along the segment chain.
2013-10-24 18:55:16 +00:00
Philip Eisenlohr
705d23a5ed
fixed bug for non-present "microstructure" info in header.
2013-10-15 12:36:52 +00:00
Martin Diehl
47577e3d11
introduced synonym "grains" for deprecated "grains" to ensure backward compatibility
2013-10-15 09:50:20 +00:00
Philip Eisenlohr
9280b0a4e2
fixed bug where configuration wrote floating point numbers for grain IDs and texture IDs.
2013-09-23 18:35:30 +00:00
Martin Diehl
3eb8aa1362
checked for python3 compatibility:
...
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
Christoph Kords
7bbee3fe60
write size as exponential not float, otherwise small numbers get rounded (to zero)
2013-08-21 15:25:27 +00:00
Franz Roters
4f7cd76b29
renamed texture_rotation into texture_transformation
...
changed keyword for material.config to axes in line with geom_fromAng.py
former keyword rotation is still recognized for compatibility
2013-07-24 11:09:39 +00:00
Pratheek Shanthraj
d2ccc06aee
added line break between rotation and euler angle information for correct parsing of config file
2013-07-23 14:33:30 +00:00
Pratheek Shanthraj
c8cc397bf4
small bug fix
2013-07-23 12:40:26 +00:00
Martin Diehl
69b3359047
forgot in last commit
2013-07-18 13:31:40 +00:00
Martin Diehl
2201a73a46
added (?correct and working?) rotation for conversion from ANG and updated bold verbosity of all other scripts
2013-07-18 13:28:54 +00:00
Philip Eisenlohr
7d5f1270d5
fixed nasty bug that prevented proper grid rescaling
2013-07-16 21:11:44 +00:00
Philip Eisenlohr
cb09c17fa2
simplified $Id treatment.
...
now reports own name in bold during runtime.
2013-07-10 09:15:42 +00:00
Philip Eisenlohr
31e0469b34
changed key "grains" to "microstructures" to be consistent with .geom description later.
2013-07-10 09:14:53 +00:00
Philip Eisenlohr
f75604c235
fixed bug in output of origin (reported size instead)
2013-07-10 09:13:21 +00:00
Philip Eisenlohr
fafa69b846
added possibility to have microstructure indices for seed points. Hence, multiple seed points can belong to the same final grain.
2013-07-10 09:12:00 +00:00
Pratheek Shanthraj
930e605afc
bug fixes and more optimizations
2013-07-03 00:48:21 +00:00
Pratheek Shanthraj
34ef7b0f34
now fully anisotropic grain growth possible by setting up the function "interfacialEnergy"
2013-07-02 04:32:32 +00:00
Pratheek Shanthraj
5ff8a7067e
fixed bug and re-reverted to faster version. added python multiprocessing functionality. polishing and renaming
2013-07-01 17:15:24 +00:00
Philip Eisenlohr
89cea68bc5
now using ASCIItable object and numpy array.repeat --> about 50x faster for large geoms (i.e. several mio voxels).
2013-06-30 19:11:16 +00:00
Philip Eisenlohr
39758f5c53
removed twoD option remnants
2013-06-30 19:09:01 +00:00
Philip Eisenlohr
1f891c544d
now using ASCIItable object (much faster file writing).
...
(temporarily) switched back to rev2496 logic...
changed to diffusion distance as command line argument (instead of taking sqrt(time))
2013-06-30 13:51:21 +00:00
Philip Eisenlohr
dd3d53e238
simplified grid/size synonyms treatment
2013-06-30 13:47:01 +00:00
Philip Eisenlohr
21c4447955
polishing and code unifications
2013-06-30 12:35:04 +00:00
Philip Eisenlohr
24fc14c2f3
fixed small syntax error introduced in last commit...
2013-06-30 00:46:52 +00:00
Philip Eisenlohr
77aa1c27b0
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
packing of already packed works now
overall speed improvement
standard unpacked output is 2D: use -1/--onedimensional for linear list
2013-06-30 00:39:48 +00:00
Philip Eisenlohr
fcc2736431
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
improved index substitution and adopted more numpy functions --> notably faster
2013-06-30 00:37:03 +00:00
Philip Eisenlohr
f204c38d4d
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
switched to numpy functions for geom reshaping and writing --> 10x faster
2013-06-30 00:34:16 +00:00
Philip Eisenlohr
7d6035dcfa
now based on damask.ASCIItable object
...
continue with next if one file is broken (used to stop!)
2013-06-30 00:31:44 +00:00
Philip Eisenlohr
da1b4ff05b
now based on damask.ASCIItable object
...
switched to numpy functions for grid generation --> about 20x faster.
2013-06-30 00:30:06 +00:00
Pratheek Shanthraj
4537720895
faster version for large number of grains. now performing diffusion on a small window around each grain where window around each grain is obtained cheaply
2013-06-27 16:57:14 +00:00
Philip Eisenlohr
034a6bc926
grid dimension can be changed by factor ("2x"), or left alone with number <= 0.
...
now understands packed geom structure.
2013-06-27 15:35:49 +00:00
Philip Eisenlohr
5f347648e1
now understands packed geom structure
2013-06-27 15:34:37 +00:00
Harsha Phukan
76171eec15
added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too.
2013-06-27 12:58:12 +00:00
Philip Eisenlohr
8b5ba9f8f0
now understands packed geom-files (much faster processing...)
2013-06-21 21:19:14 +00:00