75ee54146b
deleted unused function
2013-05-22 21:20:00 +00:00
b3a90a8a3b
last changes on preprocessing tools, only documentation needs to be done
2013-05-17 16:44:03 +00:00
17b81fda7c
still improving preprocessing scripts
2013-05-15 17:23:21 +00:00
53348db000
tested the modified scripts, all scripts generating geometry now named geom_from...
2013-05-15 16:02:38 +00:00
0b4a5cfa9b
geom_check is now using vtk class, other scripts stop execution in case of invalid grid or size
2013-05-14 21:09:37 +00:00
9093cf2072
polishing, unifying,simplifying
2013-05-14 17:51:53 +00:00
2acd737859
polishing, unifying,simplifying
2013-05-14 17:19:36 +00:00
563e74c832
now also using numpy
2013-05-14 17:00:41 +00:00
b2c50124b5
more improvements on structure, comments and header generation of pre processing tools
2013-05-13 13:10:31 +00:00
52af9aaabf
made spectral preprocessing more verbose (now reporting changes on header) and aware of new keywords, added coding information below shebang
2013-05-13 11:27:59 +00:00
deb2bd7dca
added option to only process ip or node based geometry/data
2013-05-13 10:06:40 +00:00
7f7cd0732d
improved visualization of script results
2013-05-13 09:36:19 +00:00
193c77f526
corrected prediction of computation time
2013-05-09 11:33:40 +00:00
ed1674ee1c
changed default value of eulerangles label
2013-05-09 11:32:34 +00:00
2d4cb6d128
first point on slice always starts at (0,0)
...
added option to visualize results
2013-05-08 15:59:51 +00:00
bd33169118
mistakenly committed table2ang in rev 2380, instead of vtk2ang. reverted changes in table2ang
2013-05-08 15:58:17 +00:00
ed9413a008
added simple output about progress
2013-05-07 14:32:38 +00:00
543cbf3a14
first point on slice always starts at (0,0)
2013-05-07 13:18:26 +00:00
c7f987a3c1
"unitlength" parameter, which determines the physical size of the mesh, now available as a global mesh variable "mesh_unitlength" and written to the .mesh file during init.
...
Hence, it is available to the marc_deformedGeometry.py script via "mesh_init_postprocessing()" and "mesh_get_unitlength()", so no need for setting the scaling of the displacement vectors explicitly through an option; now displacements and nodal positions are always consistent
2013-05-07 13:06:29 +00:00
9656d06fcc
- all length in nag file in micrometer
...
- "size" option replaced by "scale": uniform scaling of all length
- default normal in negative z-direction
- more output in verbose mode
- ang file numbering starts with 1
- positions in ang file in TSL, not lab frame
2013-05-07 12:57:34 +00:00
278198121d
only import vtk classes that were used
2013-05-06 16:55:44 +00:00
2371bd9f57
correct extension ".py" for "table2ang" and "vtk2ang"
2013-05-06 16:43:05 +00:00
f5482ffbf4
new script that generates ang files for slices through vtk data set
2013-05-06 16:37:54 +00:00
43647fc5e6
use datatype double instead of float for ouputs
2013-04-30 14:45:29 +00:00
12ca2c1931
added scaling option for displacements
2013-04-29 16:02:30 +00:00
9afaa9f4d0
set "line breaks" and "keywords" property
2013-04-29 09:24:07 +00:00
fbb8353bba
check if data set attribute is already present
2013-04-29 09:23:16 +00:00
cc72c0b17b
added two new scripts:
...
"marc_extractData" is a simple variant of the "postResult" script that extracts all data from a macro *.t16 file (quadratic elements not yet supported) and writes it into an asciitable
"addDataToGeometry" searches for corresponding *.txt and *.vtk file in a given directory and adds the data from the *.txt file as SCALARS to the *.vtk file
first script needed an additional function in mesh that returns the corresponding node of a given ip in a specific element
2013-04-28 20:56:17 +00:00
a003d14824
grid and size for vicinityOffset, small changes for other scripts
2013-04-25 16:51:32 +00:00
5d8664e230
updated to new keywords + more verbosity
2013-04-25 15:53:41 +00:00
7cbf107751
removed misplaced new line statement
2013-04-24 11:07:05 +00:00
650b7ef4ac
added python script that produces vtk files with the (node based and ip based) deformed mesh from marc output file
2013-04-23 18:30:56 +00:00
aa07656a90
exchanged final two occurrences of "grains" to "microstructures"
2013-04-18 13:53:13 +00:00
06c872d404
added libs.f90 to core module compilation, didn't work because kdtree2 wasn't there
2013-04-17 17:39:52 +00:00
b572c71db0
fixed small bug in error reporting (missing column head complaint was broken...)
2013-04-16 20:10:17 +00:00
d971a32516
changed keywords, now also printing out altered size/grid/microstructures information
2013-04-16 18:00:14 +00:00
2ff0f1b93e
keywords update from resolution/dimension to grid/size
2013-04-12 14:13:32 +00:00
b4f67248a5
deleted two simple scripts used for debugging but with almost no use any more
2013-04-12 13:22:15 +00:00
7bcf1d6072
added ID information of creator script to header, changed keywords (resolution->grid, dimension->size)
2013-04-12 12:48:39 +00:00
4314ab236e
added ID information of creator script to header
2013-04-12 11:15:17 +00:00
6f0308844f
geom packing/unpacking won't throw away unknown header information any more (might contain comments)
2013-04-12 10:47:44 +00:00
0b1033d63a
switched to new keywords "grid" and "size", still reads the old "resolution" and "dimension" but writes the new ones
2013-04-12 10:27:05 +00:00
770712529d
one more bug fix related to scaling
2013-03-26 16:16:59 +00:00
ccef9d4f73
fixed scaling option
2013-03-26 14:18:29 +00:00
5b96c1d62a
scaling of deformation gradient fluctuations now possible in x,y,z independently (give array).
2013-03-22 15:09:55 +00:00
cd86a80c2b
corrected handling of default value and cases where the deformation gradient is not f
2013-03-19 18:22:14 +00:00
43ec1d2051
added output of perceptual unfiform colormaps to GOM (DIC Aramis) format, deleted some old files in the documentation folder
2013-03-19 15:19:46 +00:00
757c3e5a04
fixed bug in averageDown and updated test
2013-03-13 16:23:02 +00:00
010d4c6e26
added script to make 27 periodic copies (3 in each dimension)
2013-03-11 13:40:30 +00:00
8a66693001
added script to convert data used by R.A. Lebensohn to spectral solver (geom, material.config) format
2013-03-05 16:31:17 +00:00
0d7f1e8623
killed "margin" option, now same as all others: resolution and dimension in x and y.
...
can be non-square grid.
2013-02-27 18:43:53 +00:00
565c532546
fixed bugs (grain index start, alpha orientation for elliptic osteons).
...
added option to rotate osteon relative to periodic box.
2013-02-27 10:56:30 +00:00
1cc990c7ac
osteon geom and config generator
2013-02-25 17:12:13 +00:00
831ad6d9c8
added leading zeros to names of microstructures and phases, spaces caused problems during initialization
2013-02-20 14:50:01 +00:00
7461e13c1e
relocated spectral_quit() into driver code.
...
added (dummy) core_quit() for Python damask module.
2013-02-19 14:54:34 +00:00
30024af6c2
polished string concatenations
2013-02-14 21:33:11 +00:00
d715ec769b
removed debug statements from symlink_Code.py, added autodetection for fortran compiler and disabled compiling on default
2013-02-13 18:45:49 +00:00
a90f15a3d3
corrected usage of "append" (which does not copy list items but only creates references)
2013-02-13 16:00:02 +00:00
cc9eb685fe
fixed wrong setting of coordinates in spectral solvers and removed old python scripts for setup of code and processing
2013-02-05 12:31:44 +00:00
a7e7a857c3
readjusted color values to work nicely with Msh colorspace (as in ParaView)
2013-02-02 20:17:54 +00:00
ac562f4b8b
changed internal color mapping to damask.Colormap class
2013-02-02 15:12:43 +00:00
b0263a8aab
added possibility to parse options for setup_code.sh and setup_processing.sh + other improvements in setup functionality
2013-02-01 12:21:56 +00:00
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
...
changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
55957dd99e
compile_CoreModule.py split seperately from the previous setup_processing.py
2013-01-29 15:33:20 +00:00
d713ef79d0
a simple shell script that runs compile_CoreModule.py and symLink_Processing.py in the said order
2013-01-29 15:32:43 +00:00
bd1f8044fb
symLink_Processing.py split seperately from the previous setup_processing.py
2013-01-29 15:31:57 +00:00
963ff0c3ae
added support for tetrahedron element with 4 integration points (Marc ID 127)
2013-01-28 16:25:43 +00:00
e691ff1ea1
updated setup_processing and corrected descriptions for new scripts
2013-01-22 09:56:36 +00:00
a4abebfcbb
some potentially useful postprocessing scripts
2013-01-21 23:15:23 +00:00
4af855c755
added perceptualUniformColorMap.py to the list of post-processing files
2013-01-18 17:39:09 +00:00
5676330e93
parsing options and file handling for perceptually linear diverging and sequential colormaps
2013-01-18 17:15:30 +00:00
e51779579e
removed (unsupported) "--geom" option.
2013-01-18 13:01:43 +00:00
c8aaf8f6d4
added $id flags and specified line ending types when missing.
...
setup script missed ".py" extension for geom_euclideanDistance.
2013-01-18 12:59:26 +00:00
0e93d51fed
adopted same algorithm as in addEuclideanDistance
2013-01-18 11:42:27 +00:00
096204cd79
corrected missing file renaming of output
2013-01-18 11:39:53 +00:00
7ac7d1a657
new tool for creation of colormaps, now using proper classes
2013-01-15 18:24:10 +00:00
cd5197556b
sequential colormapping with options for desired color and type(increasing or decreasing) is now working
2013-01-04 19:50:39 +00:00
820b8eb2c1
put colormap related functions into library, renamed and added scripts for creation of colormaps
2013-01-04 13:57:36 +00:00
6ab79d5593
added options for parsing and the colormap. Customized colormap is written out as an xml file importable into paraview.
2013-01-04 12:04:05 +00:00
3242361c91
added a minor change to the string expression and the for loop.
2013-01-04 12:01:34 +00:00
7157e8f03c
changed some of the color-space conversion formulae.
2013-01-04 12:00:10 +00:00
a69aaa1315
Use scipy euclidean distance function instead of FMM (runs without skfmm
...
module installed)
2012-12-19 14:50:45 +00:00
260e4191a0
replaced tabs by spaces
2012-12-13 18:15:10 +00:00
dfb791bcaf
only complain about missing Mentat release if needed...
2012-12-12 08:33:42 +00:00
34645a7222
write warning about missing Mentat release to stderr instead of stdout
2012-12-12 08:21:59 +00:00
93d822aaa1
symmetric colormap always with pure white in the middle
2012-12-11 16:50:34 +00:00
726d1173e5
polishing
2012-12-07 17:46:28 +00:00
c4ef2e5925
bug fixes
2012-12-07 17:41:50 +00:00
eaf7072bc1
Vectorized checking of neighbourhood for unique microstructure
...
(faster)
M addEuclideanDistance.py
2012-12-07 10:50:34 +00:00
89867a198c
forgot to adopt addEuclideanDistance into the auto-setup...
2012-12-06 21:51:30 +00:00
a37250eef4
script to add the Euclidean distance map from boundaries, triple lines, and quadruple points to an ASCIItable of a regular grid.
...
requires numpy, scipy, and skfmm...
2012-12-06 21:49:49 +00:00
2d4cf7da74
conditions can handle string data.
...
use "#s#label#" format to indicate that column headed by "label" contains strings (not floats)...
2012-12-03 14:29:21 +00:00
7d96bb7ce8
Add column(s) containing directional stiffness based on given cubic stiffness values C11, C12, and C44 (in consecutive columns)
2012-12-03 13:10:16 +00:00
faa5f3c459
corrected severe bug in (non-logarithmic) strain calculations..!
2012-11-30 15:02:25 +00:00
72159e867c
fixed buggy file handling for multiple input files
2012-11-30 11:03:53 +00:00
74f62c891d
slightly safer file closing strategy
2012-11-30 08:38:52 +00:00
9fb838fd28
changed switch from "sequential" to "column"
2012-11-30 08:29:34 +00:00
1bd6bcfe3d
script to list info, labels, and/or data of an ASCIItable
2012-11-30 08:26:13 +00:00
e498719dcf
forgot to add to last commit
2012-11-29 21:57:07 +00:00
f63bb747c1
script to calculate the euclidean distance map (shortest distance to a grain boundary) of a given geom description using fast marching method (O(N logN) ops). grain boundary extracted using FD stencil.
2012-11-29 21:53:57 +00:00
f446d4d87e
added wildcard matching ( "?", "*", "[(!)sequence_of_characters]" ) for ASCII table labels
2012-11-29 10:42:13 +00:00
05507a6240
removed opening of unused _tmp file
2012-11-27 17:59:56 +00:00
255af58434
post processing script to add eigenvalues and eigenvectors to tensorial data in ASCII tables.
2012-11-23 21:49:30 +00:00
78c22d8449
corrected label in case of divergence of tensor, now using correct notation for scalar: divFFT(data) instead of 1_divFFT(data)
2012-11-21 10:31:52 +00:00
b5945ced5e
changed counting of rows from pythonic (starting at 0) to human way (starting at 1)
2012-11-20 10:27:09 +00:00
b988caa6ba
added script to add deviatoric and hydrostatic part of a tensor to ASCII table
2012-11-14 10:46:51 +00:00
c3926efd93
introduced logic to use gfortran as default if ifort is not found
2012-11-13 19:12:00 +00:00
1df9be233d
changed default threshold to 0.0
2012-11-08 17:08:41 +00:00
682a98b704
forgot to alter name of 'geom_fromAng' in setup script...
2012-11-08 16:29:26 +00:00
025d6c9048
renamed script to new convention
...
aligned output behavior to that of fromVoronoiTessellation, i.e., standard output is geom, --config gives associated material.config stud
2012-11-08 15:44:51 +00:00
af2aa8500d
added option to specify crystallite index
2012-11-08 15:43:38 +00:00
c4c27860b2
renamed script
...
updated to recent standard in io processing
introduced "primitive" bicontinuous structure in addition to "diamond" and "gyroid"
2012-11-07 16:52:10 +00:00
7cf2024be3
fixed buggy parameter checking
2012-11-07 16:51:17 +00:00
e11d107956
fixed reporting to STDOUT/STDERR
...
fixed buggy parameter checking
2012-11-07 16:49:47 +00:00
cfc8823328
missed those three in former commit...
2012-11-05 21:28:01 +00:00
1bd4262cfb
renaming of (loosely related) "spectral" scripts to (more tightly related) "geom" versions.
2012-11-05 21:19:12 +00:00
1fc59107fa
removed debug statement in averageDown.py, deleted obsolete spectral_iterationCount.py (new solver will report statistics anyway and most probably the current count does not work as the screen output was modified)
2012-10-31 10:06:11 +00:00
afaf1f4e8c
made errors report to STDERR.
...
maxMicrostructure remains silent if not present.
2012-10-30 16:32:00 +00:00
f2229883b5
exchanged "maxGrainCount" for "maxMicrostructure", since this is what it really means...
2012-10-30 16:15:10 +00:00
ff164c9209
changed packing syntax from "N copies of x" to "N of x" (now consistent with IO.f90)
2012-10-30 15:53:46 +00:00
2d36d52cf7
changed packing syntax from "N copies of x" to "N of x" (now consistent with geomPack and IO.f90)
2012-10-30 15:47:11 +00:00
b9aa50c59a
improved performance for large packing values
2012-10-26 12:59:43 +00:00
868984cb89
import of damask.core will not complain any more if done in setup_processing.py, however setup_processing.py will check if core.so exist after compilation and delete it before compilation
2012-10-25 07:55:27 +00:00
17bfc3b284
added explanation of script purpose to its usage output (-h)
2012-10-18 07:24:44 +00:00
573c4702eb
fixed bug in averageDown.py and added test to check its features
2012-10-17 15:05:26 +00:00
dcff640926
fixed handling of given resolution and dimension
2012-10-17 10:04:13 +00:00
6c7affc43f
improved performance (hopefully)
...
now each new element gets a new ID, running from 1 to N for N elements
2012-10-16 18:06:02 +00:00
1004d744f2
output speed-up by *show_table/*show_model masking
2012-10-05 21:49:33 +00:00
c377dae9a6
added option to create hexagonal grid (2D slices only, according to P. Konijnenbergs experience on 3D ang)
2012-10-05 17:25:54 +00:00
124451ac1a
added missing comment sign #
2012-10-04 08:42:13 +00:00
0a961bef55
made test for spectral packing/unpacking working again, small fixes in the 2 scripts
2012-09-28 14:49:07 +00:00
6d97a92913
further improvements on the conversion, seems to work quite good for the 2D case now
2012-09-28 12:10:10 +00:00
6619717baf
improved the conversion of tables to ang files
2012-09-26 12:20:14 +00:00
5dbbb56460
fixed bug in 2D output format alignment.
2012-09-13 12:28:21 +00:00
77b2eef269
corrected wrong compiler option for gfortran in setup and updated naming scheme
2012-09-13 12:20:00 +00:00
b76fee325b
script to shift (physical) origin of geometry file and/or shift microstructure indices by fixed amount and substitute individual indices by other ones.
2012-09-13 10:12:00 +00:00
66e38606f0
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:09:54 +00:00
1c0649e17a
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:08:57 +00:00
8078585ce8
removed two left-over debug statements
2012-09-13 08:46:18 +00:00
3d14c5b234
functionality now subsumed into geomCanvas
2012-09-13 07:58:29 +00:00
4263191423
functionality now subsumed into geomCanvas
2012-09-13 07:57:57 +00:00
1fe202fd90
added $ID and line endings.
2012-09-13 07:56:45 +00:00
4f6e0eda32
splitter geom-file un/packing into two separate scripts.
2012-09-05 15:15:11 +00:00
dc55e30cf1
added "startingIncrement" to spectralOut result interpretation
2012-09-05 15:14:36 +00:00
b7dc9f9944
renamed spectral_buildElements.py to nodesFromCentroids.py and added first simple version of an ascii table to ang converter
2012-08-30 17:01:46 +00:00
73349d02f5
merged precision info into the file prec.f90 and removed prec_single.f90
...
precision information is now parsed as a makro, defined by the compiler, eg. -DFLOAT=8 for 8 byte long floats or -- in case no values is given -- for the FEM wrapper by the interface files.
Please don't forget to run setup_code.py !!!!!!!!!!!
abaqus_v6.env is adjusted to specify the standard precision (float=8, int=4) and got some extra compilation options, some deprecated warning supressors are removed
Optional Marc modification will follow that allow automatic selection of suitable precision
2012-08-28 16:08:17 +00:00
3f99d2bb65
further improved prefix handling
2012-08-27 09:39:57 +00:00
96ba5ecae4
moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
...
f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
975c3437ac
added possibility to use comma in functions, to prevent splitting substituted by ';'. Eg. round(4.021,1) becomes round(4.021;1) in command line call
2012-08-22 17:47:34 +00:00
4cfc302cdd
put prefix in front of the filename, not the directory name
2012-08-03 13:14:51 +00:00
Christoph Kords