c710709b1a
example Makefile typically does not work, deleted
2015-12-15 14:34:03 +00:00
19ddbc9b21
fixed typo and simplified
2015-12-15 06:16:47 +00:00
6de6b8b87f
fixed wrong variable name when using pre-existing microstructures from table.
...
added switch to skip effort for tolerance == 0.
2015-12-09 14:13:19 +00:00
d76fcb4be8
was giving wrong results
2015-12-05 21:34:39 +00:00
7eb7a4e8cd
changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered
2015-12-04 22:34:19 +00:00
35202494c2
fixed issue caused by using -r twice as option label.
2015-12-04 04:33:23 +00:00
784c78a3b0
removed defunct option to output labels as column vector.
2015-12-04 04:31:53 +00:00
937634d703
added group shuffling (i.e. exchanging unique values)
2015-12-04 01:17:45 +00:00
08014a7030
small polishing
2015-12-04 01:16:49 +00:00
3fb1f02382
forgot $Id$ and line endings…
2015-12-03 22:33:38 +00:00
2efc602854
Smooth geometry by selecting most frequent microstructure index within given stencil at each location.
2015-12-03 22:32:28 +00:00
8f5c3b9ad7
small polishing.
2015-12-02 23:13:10 +00:00
55b33e5597
added option “inplace” to directly modify VTK file instead of creating copy_added.
2015-12-02 23:10:14 +00:00
f49091c952
addDeformedConfiguration without core module
2015-12-02 20:53:02 +00:00
6ecbd3ae56
makefile had problems with static flag, mentat spectral Box was still using table.croak
2015-12-02 20:02:19 +00:00
0ffcb7fdaf
cleaning
2015-12-01 16:37:20 +00:00
f61f87e6d0
updated reference results (visual impression much better now) for geom_fromTable and silenced verbose debug output per default since it's causing problems when piping to file
2015-11-30 16:22:59 +00:00
cee9a345b7
added option to label microstructure.
...
updated to most recent asciitable/damask.util infrastructure.
2015-11-20 16:30:55 +00:00
0db4a7fad0
added debug messages.
...
added background message for estimated time (+ grain info).
fixed functionality—finally works as intended (lump orientations within threshold).
2015-11-20 16:27:57 +00:00
40c2a5dd6d
differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though
2015-11-20 15:58:32 +00:00
24382ed827
unified options to enable automated parsing for documentation
2015-11-16 10:52:56 +00:00
1336c8d0e6
now using default 2D output for geometry
2015-11-16 09:54:39 +00:00
302178ebb4
some trouble since clean was already in PETSc rules
2015-11-14 09:47:18 +00:00
4c51c15795
changed option to —coordinates.
...
gracefully extend points to be 3D.
2015-11-14 01:52:31 +00:00
4b85941a94
some comments
2015-11-11 19:51:34 +00:00
4ca566efa8
geom_rotate: rotates a geometry
2015-11-11 19:51:17 +00:00
2c9f9981e2
polishing of addRectiliearGridData.
...
subsumed functionality of addVoxelgridData into it.
2015-11-10 01:49:32 +00:00
434bf2413e
simplified if—else with a = b if c else d
2015-11-10 01:35:26 +00:00
ccf7530121
added output selection “rodrigues”
2015-11-10 01:34:10 +00:00
fe1dbf2ea0
output file name now contains both position and mode.
...
e.g. ${prefix}_ipinitialcoord(point).vtr
2015-11-03 21:44:36 +00:00
ad06fc1a77
fixed buggy mapIncremental behavior for anything else than averaging (the standard case luckily…)
2015-10-27 20:16:24 +00:00
072be9c1bb
help now working if no mentat release present.
...
improved style
2015-10-26 19:34:44 +00:00
41f1994569
new style and test for grain growth
2015-10-26 17:59:36 +00:00
ebf20f2ebc
unified style and other minor improvements
2015-10-15 19:51:27 +00:00
e72ae63873
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
2015-10-14 21:35:56 +00:00
dd0167821f
corrected reporting and convergence check
2015-10-14 20:33:22 +00:00
bdfd9c69bb
simplified dimension handling
2015-10-14 18:45:33 +00:00
46564d3df8
commenting and introducing functions for regulary used code
2015-10-14 18:40:02 +00:00
180d4625c1
trying to simplify
2015-10-13 21:00:12 +00:00
8fac635c15
made hybridIA stuff working again
2015-10-13 17:02:07 +00:00
f1482a2af4
fixed buggy behavior in case of non unit-sized geometry
2015-10-12 18:10:26 +00:00
723f135177
can now handle tiling of values (scalar [string,number] spread out to vector and such)
2015-10-09 14:22:41 +00:00
196afb9b31
adopted change in named argument (strict -> SST) for disorientation
2015-10-09 13:06:51 +00:00
fc9d290339
unified structure and names, added test for vtk{point/voxel}cloud
2015-10-09 11:24:26 +00:00
8fe443d068
clearer naming
2015-10-09 06:26:18 +00:00
61090c955d
removed code doubling
2015-10-09 05:51:58 +00:00
6d74cbf374
simpliefied scripts for vtk generation and introduce simple test to check if they run
2015-10-08 21:30:33 +00:00
fd04e0763b
legacy code geom... can be achieved by combining voronoi tesselation and geom_rescale, for ipfs can be plotted from ascii table with matlab
2015-10-08 17:41:35 +00:00
127c03c525
unneeded module
2015-10-06 19:29:32 +00:00
1bd8167445
requires core module and is most likely not used.
...
When needed, a Complete, lean redesign is simpler than updating to current coding style
2015-10-06 18:11:58 +00:00
f014cef043
improved performance for non-weighted Voronoi Tessellation
2015-10-06 18:03:06 +00:00
22048cb546
fixed a bug
2015-10-02 01:59:59 +00:00
2c6a6f6530
fixed bug.
...
introduced possibility for poke bounding box in all dimensions.
2015-10-02 00:21:23 +00:00
a2a7664e8e
default to 0–1 for z range
2015-09-29 22:35:57 +00:00
21bcafe3e4
seeds coordinates now rescaled to proper box size.
2015-09-29 22:27:46 +00:00
863fe5ddf0
needs modules “math” and “random” for user-supplied conditions…
...
(do not remove through pyflakes—shall we introduce dummy code to keep the modules “active”?)
2015-09-29 22:27:07 +00:00
202ee00049
Eliminated redundant searches for similar orientations in neighboring points…speeds up script by 2 orders of magnitude
2015-09-28 19:03:24 +00:00
55dc2b419a
warn if unexpected file size is encoutered
2015-09-24 17:07:27 +00:00
4ead24a134
more tests
2015-09-24 16:52:58 +00:00
f4c53e0be8
removed warnings by pyflakes, implemented new croak functionality
2015-09-24 15:34:27 +00:00
e1157126bc
cleaned with pyflakes, added test for seed generation
2015-09-24 13:21:44 +00:00
f4d4a8e1ec
adopted philips changes for reporting, using pyflakes to clean up
2015-09-24 09:24:42 +00:00
3c901e5549
added option for Euler angle output in degrees
2015-09-23 23:05:28 +00:00
3fa0312087
update usage of asciitable to new interface
2015-09-23 19:20:18 +00:00
42ac7902f7
indents wrong in fortran, seeds_fromDistribution bugfix and using ASCII table facilities
2015-09-20 21:03:10 +00:00
666b438e6a
using ASCII table
2015-09-18 16:12:27 +00:00
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
fb48719283
fixed critical bugs
2015-09-15 19:02:59 +00:00
6f20651250
copy and paste error and new interface for test
2015-09-12 19:29:34 +00:00
6683c1fb73
fixed a bug
2015-09-12 16:34:31 +00:00
0c7f4e690a
fixed reference, still not 100% sure if everything is correct, but apparently the test never run
2015-09-12 16:30:28 +00:00
c53bf02fea
changed back to old behavior
2015-09-11 15:38:03 +00:00
5f9fae1b75
simplified reporting using "emph"
2015-09-11 12:55:43 +00:00
c69e7ec149
switched conjugation to apply to symmetric equivalents instead of incoming quaternion.
...
passing-down of degree option handled directly.
2015-09-09 22:43:56 +00:00
e0d5cef047
Script to merge multiple ASCIItables. Stops at end of shortest one.
2015-09-09 22:22:29 +00:00
70f906a2c4
follow new syntax and bugfix, marc 2014 is default
2015-09-09 16:45:49 +00:00
c9dcb41bac
fixed sorting logic to respect numerical values of vector data (i.e. 1,2,3,….,10,11,… instead of 10,11,12,1,2,…)
2015-09-08 23:55:44 +00:00
1c164574ac
more fixes following new possibilities of ascii table
2015-09-08 19:42:14 +00:00
4e9b27b0ce
failure in last commit, using standard keyword eulerangles instead of eulers
2015-09-08 18:48:58 +00:00
c2d27d56fa
updated to new ASCII table style
2015-09-08 15:26:40 +00:00
9a2c49ff50
corrected label header
2015-09-08 13:45:46 +00:00
dad0fdfb85
still needed
2015-09-05 14:59:52 +00:00
45a3568b40
bugfix for last commit
2015-09-05 14:46:57 +00:00
cf90b764f8
calculation was for nyquist freq not fully correct.
...
See Notes on FFT-based differentiation
Steven G. Johnson, MIT Applied Mathematics
Created April, 2011, updated May 4, 2011:
2015-09-05 11:51:36 +00:00
08f8746182
made some more scripts working again
2015-08-31 21:22:44 +00:00
8ff79e1eb0
NaN now considered transparent
2015-08-31 17:41:00 +00:00
8f79744f2c
now works with (rounded) floating point numbers as mapping indices
2015-08-31 16:01:11 +00:00
6100185855
switch to new ASCII table class was buggy, using damask.util.emph
2015-08-31 11:00:45 +00:00
115518a2c8
minor changes in commit and setting the script ID properly
2015-08-29 15:10:43 +00:00
cff6307779
Update existing value(s) to expression(s) respecting condition.
2015-08-29 00:54:45 +00:00
b4768013a0
fix output error in output geom file.
2015-08-26 16:39:33 +00:00
d8afe9be23
Add scalars, vectors, and/or an RGB tuple from an ASCIItable to existing VTK rectilinear grid (.vtr/.vtk).
2015-08-25 00:39:37 +00:00
cec6d7d220
for generating rectilinear grid of either cell type or point type from ASCII table.
2015-08-24 20:48:50 +00:00
7961b486cb
now compatible with updated Orientation.disorientation() output, i.e., select item [0] (the quaternion).
2015-08-24 14:20:09 +00:00
c215139ce1
now works with recent changes of ASCIItable and with STDIN to STDOUT.
2015-08-24 14:01:24 +00:00
afc88c7029
now works with recent changes of ASCIItable.
2015-08-24 13:42:29 +00:00
38992fdc37
now use outsourced damask.util methods
2015-08-23 23:19:40 +00:00
00b8660203
redundant.
...
functionality available in “geom_fromTable”…
2015-08-20 19:46:11 +00:00
c85306257d
redundant.
...
improved functionality now via “ang_toTable” and “geom_fromTable”…
2015-08-20 19:44:17 +00:00
63d5506388
adopting further simplifications provided through ASCIItable class.
2015-08-20 19:42:05 +00:00
9439cf7278
add cumulative (first to current) values of given labels to table
2015-08-20 19:40:45 +00:00
05a8124d82
simplified rescaling interpretation
2015-08-19 18:30:50 +00:00
2a13d78196
did not run
2015-08-18 17:24:15 +00:00
324c5b36d3
restructured to get help even without mentat release
2015-08-18 16:39:47 +00:00
70daa8663f
adoption of new ASCIItable API
2015-08-18 14:37:32 +00:00
ca1fe6bb82
updated to new ASCII table style
2015-08-18 07:56:03 +00:00
d0b75b5a10
fixed table.croak error in last commit
2015-08-18 04:41:36 +00:00
befd6aa7ff
fixed stderr output (croaking..) as per new ASCII table style
2015-08-18 04:33:45 +00:00
419a612d0e
updated to new ASCII table style
2015-08-18 04:32:19 +00:00
ac7f443595
adopted new ASCIItable API
2015-08-13 21:25:08 +00:00
7ca1e77495
bug fixing
2015-08-13 08:32:09 +00:00
f982f42839
convert TSL/EDAX ang file format to proper ASCIItable.
2015-08-12 22:14:19 +00:00
1976cf44c1
fixed os.path.splitext bug when using STDIN input
2015-08-12 21:56:37 +00:00
3e65c324de
adopted changes in ASCIItable API
2015-08-12 21:52:33 +00:00
dfbd2fd013
fixed bug for STDIN processing
2015-08-12 21:28:07 +00:00
1149053c61
updated to new ASCII table style
2015-08-12 20:59:10 +00:00
9ee49b2c3b
adopted recent changes to API in ASCIItable.
...
removed Voronoi method from core module.
fixed buggy Laguerre tessellation (wrong seed scaling, wrong x,y,z order)
2015-08-12 20:55:53 +00:00
8217fdb115
adopted recent changes to API in ASCIItable.
2015-08-12 18:56:40 +00:00
31a6ac328d
adjusted to new ASCII table style and bugfix
2015-08-12 18:53:39 +00:00
cd70ec5a38
adopted recent changes to API in ASCIItable.
2015-08-12 18:43:11 +00:00
cd9a802a2b
adoption of recent API change in ASCIItable.
2015-08-12 18:09:40 +00:00
5dad5df588
adoption of recent API change in ASCIItable.
2015-08-12 17:47:38 +00:00
3097c87bea
adoption of recent API change in ASCIItable.
2015-08-12 17:43:49 +00:00
35863e0229
fixed averageDown and made it's test running
2015-08-12 13:43:05 +00:00
bceeb0964c
corrected calculation of expected file size for legacy files beyond the 4 GB limit
2015-08-10 18:48:48 +00:00
126cea24ce
fixed syntax and undefined variable calling errors
2015-08-09 22:12:49 +00:00
57dfa6a87e
added fall-back to non-multithreading execution when using only single CPU.
2015-08-08 21:43:21 +00:00
31f6d22d89
added option (force) to override selective seeding check.
2015-08-08 20:20:53 +00:00
889a5807bb
more conservative (and probably appropriate) variance default for Laguerre tessellations: 1.0 —> 0.1
2015-08-08 20:12:26 +00:00
bbeb210708
functionality now provided by more general “geom_fromImage”
2015-08-07 22:16:40 +00:00
9729c03c00
removed obsolete code. added croak about number of cpus used.
2015-08-07 22:15:24 +00:00
a4772343b0
adopted new ASCIItable API. some polishing.
2015-08-07 22:08:54 +00:00
4ed56a8ba6
removed debugging print statements
2015-08-07 20:52:57 +00:00
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
de90a04374
assign indices from microstructure column if present for laguerre tessellation
2015-07-30 04:42:00 +00:00
599bb768ef
index microstructure from 1 instead of zero for laguerre tessellation
2015-07-28 22:15:32 +00:00
020a3e2634
superfluous since same can be (even more flexibly) accomplished with:
...
reLabel -l old -s old+tag
2015-07-26 00:41:42 +00:00
0db33f21b5
superfluous since same can be accomplished with:
...
showTable -l -d (labels and data)
2015-07-26 00:39:32 +00:00
b69a422529
Generate the geometry description of a directional non-equiaxed grain structure, e.g., RVE cutted from a cold-rolling sheet. '--reduct' specifies the thickness reduction after rolling, and '-n' specified the number of samples cutted, e.g., n=5, then five samples will be cutted from the sheet along theta = 0 (the rolling direction), theta = 22.5, theta = 45, theta = 67.5, and theta = 90 (the transversal direction).
2015-07-24 14:12:10 +00:00
657ed7ed35
group voxels/pts by orientation and position, require spicy.
2015-07-24 13:30:33 +00:00
fc0e29c45b
removed erroneous rescaling of Laguerre weights.
2015-07-22 22:34:40 +00:00
b15f68905f
fig a bug.
2015-07-21 15:38:12 +00:00
331a4c5775
add the number of the re-constructed orientation into the name of output files.
2015-07-18 17:25:05 +00:00
e08b7bd02e
forgot to rescale transparency mask by pixelsizes.
2015-07-16 22:34:26 +00:00
3c9d6df889
fixed typo in last commit
2015-07-15 18:15:39 +00:00
6ebc490207
fixed broken functionality by adopting new ASCIItable class output for data_readArray().
2015-07-15 16:57:03 +00:00
d676fdc1ce
fixed default behavior of symmetry. used to advertise having cubic symmetry but was using [].
2015-07-10 16:58:30 +00:00
dce0501358
script to rename labels in an ASCIItable
2015-07-10 16:28:01 +00:00
f8658ffea1
added “gap” value to render pieces of resulting image transparent.
2015-07-07 14:53:55 +00:00
812d17f91c
streamlined column processing based on recently introduced asciitable functionality.
2015-07-01 15:48:34 +00:00
ef243d3e19
added references
2015-06-30 14:52:48 +00:00
61e3987bfa
extract the deformation anisotropic coefficients (r values) and strength anisotropic coefficients (normalized yield stress) automatically.
2015-06-29 15:57:31 +00:00
47249bb52a
added possibility to scale deformation fluctuation field.
2015-06-29 09:44:49 +00:00
fcdd80bba3
switched order of command line options to make consequence of “degrees” switch more clear, i.e., it affects both the tolerance and Euler angles…
2015-06-29 09:40:44 +00:00
129026662c
fixed small bugs.
...
modernized file treatment.
improved Laguerre speed by a factor of 2 due to precalculating the squared weights.
2015-06-27 08:41:08 +00:00
088299daf2
fix the bug in the calculation of RMSD, replace N with sqrt(N).
2015-06-25 12:41:26 +00:00
e310763c52
Novel script to generate geometry description and material configuration from position, phase, and orientation data in an ASCIItable.
...
Can deal with phase-specific lattice symmetry, condenses orientations within a given angular threshold, and might be used in lieu of geom_fromANG when replacing the ANG header.
2015-06-21 11:56:05 +00:00
9b1f16e99e
report data range.
...
gracefully deal with constant field (below 1e-8 noise).
2015-06-19 11:36:21 +00:00
acad1246f3
fixed wrong variable name for quaternions as rotation options
2015-06-19 04:38:00 +00:00
94423cc7ac
added scriptID line “ removed during last commit”
2015-06-17 19:47:50 +00:00
012c830eff
removed writing of debugging statement to final output
2015-06-17 19:44:01 +00:00
e440305532
streamlined ASCIItable error checking.
2015-06-17 06:52:43 +00:00
5cc7b60a88
simplified processing of ASCIItables by utilizing the improved class methods.
...
modernized file looping.
2015-06-16 17:21:24 +00:00
d57c7568dd
simplified processing of ASCIItables by utilizing the improved class methods.
...
modernized file looping.
updated help.
2015-06-16 05:42:11 +00:00
c089ff9256
now with $ID$ and correct line endings…
2015-06-15 18:13:06 +00:00
6086baba52
Generate PNG image from scalar data on grid deformed by (periodic) deformation gradient.
2015-06-15 18:12:38 +00:00
a5b3e9d64c
typos fixed
2015-06-14 05:51:53 +00:00
37792f67df
automatically figure dimension of labels to tag.
2015-06-13 11:55:20 +00:00
c7f59c6482
change angle into radian.
2015-06-11 17:57:23 +00:00
bfe76794af
add the output of ".ang" file
2015-06-11 16:50:29 +00:00
c45a0ce55e
improved stability for geom_fromAng. no longer depends on correct header information.
...
geom_fromVPSC with correct size determination now
2015-06-11 10:06:53 +00:00
e243632eb5
simplifications by adopting functionality provided by new asciitable class methods.
2015-06-08 05:07:14 +00:00
d99e34d870
typo caused problems with more than one tensor
2015-06-06 15:42:29 +00:00
129446e687
simplified script. deals now only with single format at a time. result is printed to STDOUT unless “basename” option specified.
2015-06-06 11:12:07 +00:00
b7f98c00d6
input file handling now save for large file count.
...
streamlining of input column detection.
fixed bug iterating through “grainIDs” instead of “grain”.
proper closing and dismissal of output table file.
2015-06-05 11:50:15 +00:00
bb9e080790
input file handling now save for large file count.
...
reshape input rotation matrix to (3,3).
2015-06-05 11:47:27 +00:00
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
f50927b99f
Create seeds file by poking at 45 degree through given geom file.
...
Mimics APS Beamline 34-ID-E DAXM poking.
2015-06-05 11:41:44 +00:00
6eb83530b8
streamlining
2015-06-05 11:34:41 +00:00
2877066a6c
removed debug statement and simplified
2015-06-04 08:51:10 +00:00
bb677a26aa
added interface for predefined colormaps
2015-05-29 18:50:54 +00:00
92654dc2cd
fixed syntax bug, instantiating of Color object, and file closure.
2015-05-29 18:36:09 +00:00
54746c85d3
fixed bug for only blacklisting.
2015-05-28 22:31:32 +00:00
147cc91496
some polishing to laguerre tessellation
2015-05-28 20:57:03 +00:00
c327735c0d
order of whitelist is maintained in output (only if no blacklist is specified). allows to rearrange column order in tables.
2015-05-27 23:02:11 +00:00
c5349ab041
some polishing for option parser
2015-05-26 20:22:11 +00:00
73c6bd767f
added options for selective seed picking based on Mitchell’s best candidate algorithm for more uniformly distributed (spatially) seeds points
2015-05-26 20:13:35 +00:00
4107d5d1d2
Script to calculate Quaternion from input orientation matrix
2015-05-26 06:38:48 +00:00
5900fa4bf5
corrected defaults and simplified loops
2015-05-25 10:49:20 +00:00
1f160dfd72
FFT was at single precision only
2015-05-24 16:35:37 +00:00
e8fb49edc6
missing bracket
2015-05-22 06:17:35 +00:00
737e474cea
consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior
2015-05-22 05:56:49 +00:00
fbfa55e910
adjusted to new table style and naming of output
2015-05-22 04:57:05 +00:00
f363d81de5
simplified column parsing
2015-05-21 21:54:47 +00:00
2349e6c79c
standard way of reporting
2015-05-21 16:04:19 +00:00
7af176d13f
introduced option to set microstructure starting index
2015-05-21 10:04:52 +00:00
14b921f6d5
corrected help text.
2015-05-21 00:13:50 +00:00
df5dd98576
simplified boolean dictionaries to “if else” constructs.
2015-05-21 00:13:11 +00:00
acc2cb656b
simplifications due to better functionality available through asciitable.py
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output filename format has slightly changed: binned-X-Y_weighted-W_
2015-05-21 00:08:32 +00:00
439d778cc0
simplified column check.
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fixed typos and improved help.
2015-05-20 23:21:35 +00:00
Martin Diehl