Commit Graph

529 Commits

Author SHA1 Message Date
Philip Eisenlohr 0fa9f7dc22 can now show data for tables lacking column labels (use option --nolabels) 2013-07-08 11:56:16 +00:00
Pratheek Shanthraj 930e605afc bug fixes and more optimizations 2013-07-03 00:48:21 +00:00
Pratheek Shanthraj 34ef7b0f34 now fully anisotropic grain growth possible by setting up the function "interfacialEnergy" 2013-07-02 04:32:32 +00:00
Pratheek Shanthraj 5ff8a7067e fixed bug and re-reverted to faster version. added python multiprocessing functionality. polishing and renaming 2013-07-01 17:15:24 +00:00
Philip Eisenlohr 89cea68bc5 now using ASCIItable object and numpy array.repeat --> about 50x faster for large geoms (i.e. several mio voxels). 2013-06-30 19:11:16 +00:00
Philip Eisenlohr 39758f5c53 removed twoD option remnants 2013-06-30 19:09:01 +00:00
Philip Eisenlohr 1f891c544d now using ASCIItable object (much faster file writing).
(temporarily) switched back to rev2496 logic...
changed to diffusion distance as command line argument (instead of taking sqrt(time))
2013-06-30 13:51:21 +00:00
Philip Eisenlohr dd3d53e238 simplified grid/size synonyms treatment 2013-06-30 13:47:01 +00:00
Philip Eisenlohr 21c4447955 polishing and code unifications 2013-06-30 12:35:04 +00:00
Philip Eisenlohr 24fc14c2f3 fixed small syntax error introduced in last commit... 2013-06-30 00:46:52 +00:00
Philip Eisenlohr 77aa1c27b0 now based on damask.ASCIItable object
continue with next if one file is broken (used to stop!)
packing of already packed works now
overall speed improvement
standard unpacked output is 2D: use -1/--onedimensional for linear list
2013-06-30 00:39:48 +00:00
Philip Eisenlohr fcc2736431 now based on damask.ASCIItable object
continue with next if one file is broken (used to stop!)
improved index substitution and adopted more numpy functions --> notably faster
2013-06-30 00:37:03 +00:00
Philip Eisenlohr f204c38d4d now based on damask.ASCIItable object
continue with next if one file is broken (used to stop!)
switched to numpy functions for geom reshaping and writing --> 10x faster
2013-06-30 00:34:16 +00:00
Philip Eisenlohr 7d6035dcfa now based on damask.ASCIItable object
continue with next if one file is broken (used to stop!)
2013-06-30 00:31:44 +00:00
Philip Eisenlohr da1b4ff05b now based on damask.ASCIItable object
switched to numpy functions for grid generation --> about 20x faster.
2013-06-30 00:30:06 +00:00
Philip Eisenlohr b2c8a7e345 removed tabs (and extended tab-awareness of pre-commit hook to python scripts) 2013-06-29 21:14:58 +00:00
Martin Diehl e3a1e70542 started to use vtk class for writing results 2013-06-27 18:21:20 +00:00
Pratheek Shanthraj 4537720895 faster version for large number of grains. now performing diffusion on a small window around each grain where window around each grain is obtained cheaply 2013-06-27 16:57:14 +00:00
Philip Eisenlohr 034a6bc926 grid dimension can be changed by factor ("2x"), or left alone with number <= 0.
now understands packed geom structure.
2013-06-27 15:35:49 +00:00
Philip Eisenlohr 5f347648e1 now understands packed geom structure 2013-06-27 15:34:37 +00:00
Harsha Phukan 76171eec15 added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too. 2013-06-27 12:58:12 +00:00
Christoph Kords 13227dff0f corrected calculation of origin 2013-06-22 14:13:29 +00:00
Philip Eisenlohr 8b5ba9f8f0 now understands packed geom-files (much faster processing...) 2013-06-21 21:19:14 +00:00
Philip Eisenlohr 4cf2e75dc1 justification of numbers done with space instead of "0"s 2013-06-21 21:18:10 +00:00
Philip Eisenlohr e53c67f0e0 added black list for immutable microstructures.
now able to parse packed geom-files.
2013-06-21 21:17:03 +00:00
Philip Eisenlohr 3b4573301c removed now obsolete Moore neighborhood array 2013-06-21 19:10:10 +00:00
Philip Eisenlohr 5d15f68914 added help description.
fixed bug for grain index (+1).
renamed some variables and added a few comments.
2013-06-21 19:08:20 +00:00
Pratheek Shanthraj 2e8756b724 faster version of smoother using the scipy gaussian filter to get the diffused microstructure and vectorized sharpening of the diffused microstructure 2013-06-21 16:59:49 +00:00
Philip Eisenlohr 45951e27c5 script to smooth out interface roughness in a (polycrystal) geom 2013-06-20 19:45:25 +00:00
Christoph Kords 0740845d81 allow coordinates to not be in consecutive columns
keep origin of original data set
2013-06-20 07:36:35 +00:00
Christoph Kords e6499e1a39 renamed script in order to distinguish from "add" scripts that act on ascii tables 2013-06-13 09:05:30 +00:00
Ding Wang 920195809c fixed bug in auto determination of size and grid 2013-06-11 10:11:14 +00:00
Martin Diehl becacb675a linear reconstruction no longer needed for odd resolution 2013-06-05 14:05:11 +00:00
Martin Diehl e635b06270 last polishing on preprocessing scripts, documentation and scripts are all up to date.
added addSchmidfactors to post processing scripts
2013-06-04 12:56:57 +00:00
Philip Eisenlohr 32a16f9745 wildcard matching for column headings, e.g. "[159]_p" to extract only the diagonal elements (scalars) of stress, or "[1-9]_p" to extract all nine values.
fixed VTK file format problem where double precision floats were incorrectly interpreted because they were announced as "float" (now "double").
2013-05-29 10:24:00 +00:00
Martin Diehl a21dd816c7 init reporting of constitutive_*.f90 had less/to much spaces, renamed label to LABEL because it is a parameter.
removed debug output of geom_fromEuclideanDistance.py
2013-05-28 17:31:55 +00:00
Christoph Kords 837574278e removed (now) unused function for reading of configFile 2013-05-28 14:47:50 +00:00
Christoph Kords 10a32dc17b use predefined maps in damask.Colormap class; no need for a colorMap config file anymore 2013-05-28 14:18:21 +00:00
Philip Eisenlohr 8fd590d7bd added red--blue map 2013-05-24 07:41:44 +00:00
Christoph Kords 19dc95a915 now able to choose vector that is used for warpvector filter via option.dispLabel 2013-05-22 21:23:01 +00:00
Christoph Kords 75ee54146b deleted unused function 2013-05-22 21:20:00 +00:00
Martin Diehl b3a90a8a3b last changes on preprocessing tools, only documentation needs to be done 2013-05-17 16:44:03 +00:00
Martin Diehl 17b81fda7c still improving preprocessing scripts 2013-05-15 17:23:21 +00:00
Martin Diehl 53348db000 tested the modified scripts, all scripts generating geometry now named geom_from... 2013-05-15 16:02:38 +00:00
Martin Diehl 0b4a5cfa9b geom_check is now using vtk class, other scripts stop execution in case of invalid grid or size 2013-05-14 21:09:37 +00:00
Martin Diehl 9093cf2072 polishing, unifying,simplifying 2013-05-14 17:51:53 +00:00
Martin Diehl 2acd737859 polishing, unifying,simplifying 2013-05-14 17:19:36 +00:00
Martin Diehl 563e74c832 now also using numpy 2013-05-14 17:00:41 +00:00
Martin Diehl b2c50124b5 more improvements on structure, comments and header generation of pre processing tools 2013-05-13 13:10:31 +00:00
Martin Diehl 52af9aaabf made spectral preprocessing more verbose (now reporting changes on header) and aware of new keywords, added coding information below shebang 2013-05-13 11:27:59 +00:00
Christoph Kords deb2bd7dca added option to only process ip or node based geometry/data 2013-05-13 10:06:40 +00:00
Christoph Kords 7f7cd0732d improved visualization of script results 2013-05-13 09:36:19 +00:00
Christoph Kords 193c77f526 corrected prediction of computation time 2013-05-09 11:33:40 +00:00
Christoph Kords ed1674ee1c changed default value of eulerangles label 2013-05-09 11:32:34 +00:00
Christoph Kords 2d4cb6d128 first point on slice always starts at (0,0)
added option to visualize results
2013-05-08 15:59:51 +00:00
Christoph Kords bd33169118 mistakenly committed table2ang in rev 2380, instead of vtk2ang. reverted changes in table2ang 2013-05-08 15:58:17 +00:00
Christoph Kords ed9413a008 added simple output about progress 2013-05-07 14:32:38 +00:00
Christoph Kords 543cbf3a14 first point on slice always starts at (0,0) 2013-05-07 13:18:26 +00:00
Christoph Kords c7f987a3c1 "unitlength" parameter, which determines the physical size of the mesh, now available as a global mesh variable "mesh_unitlength" and written to the .mesh file during init.
Hence, it is available to the marc_deformedGeometry.py script via "mesh_init_postprocessing()" and "mesh_get_unitlength()", so no need for setting the scaling of the displacement vectors explicitly through an option; now displacements and nodal positions are always consistent
2013-05-07 13:06:29 +00:00
Christoph Kords 9656d06fcc - all length in nag file in micrometer
- "size" option replaced by "scale": uniform scaling of all length
- default normal in negative z-direction
- more output in verbose mode
- ang file numbering starts with 1
- positions in ang file in TSL, not lab frame
2013-05-07 12:57:34 +00:00
Christoph Kords 278198121d only import vtk classes that were used 2013-05-06 16:55:44 +00:00
Christoph Kords 2371bd9f57 correct extension ".py" for "table2ang" and "vtk2ang" 2013-05-06 16:43:05 +00:00
Christoph Kords f5482ffbf4 new script that generates ang files for slices through vtk data set 2013-05-06 16:37:54 +00:00
Christoph Kords 43647fc5e6 use datatype double instead of float for ouputs 2013-04-30 14:45:29 +00:00
Christoph Kords 12ca2c1931 added scaling option for displacements 2013-04-29 16:02:30 +00:00
Christoph Kords 9afaa9f4d0 set "line breaks" and "keywords" property 2013-04-29 09:24:07 +00:00
Christoph Kords fbb8353bba check if data set attribute is already present 2013-04-29 09:23:16 +00:00
Christoph Kords cc72c0b17b added two new scripts:
"marc_extractData" is a simple variant of the "postResult" script that extracts all data from a macro *.t16 file (quadratic elements not yet supported) and writes it into an asciitable
"addDataToGeometry" searches for corresponding *.txt and *.vtk file in a given directory and adds the data from the *.txt file as SCALARS to the *.vtk file

first script needed an additional function in mesh that returns the corresponding node of a given ip in a specific element
2013-04-28 20:56:17 +00:00
Martin Diehl a003d14824 grid and size for vicinityOffset, small changes for other scripts 2013-04-25 16:51:32 +00:00
Martin Diehl 5d8664e230 updated to new keywords + more verbosity 2013-04-25 15:53:41 +00:00
Martin Diehl 7cbf107751 removed misplaced new line statement 2013-04-24 11:07:05 +00:00
Christoph Kords 650b7ef4ac added python script that produces vtk files with the (node based and ip based) deformed mesh from marc output file 2013-04-23 18:30:56 +00:00
Pratheek Shanthraj aa07656a90 exchanged final two occurrences of "grains" to "microstructures" 2013-04-18 13:53:13 +00:00
Martin Diehl 06c872d404 added libs.f90 to core module compilation, didn't work because kdtree2 wasn't there 2013-04-17 17:39:52 +00:00
Philip Eisenlohr b572c71db0 fixed small bug in error reporting (missing column head complaint was broken...) 2013-04-16 20:10:17 +00:00
Martin Diehl d971a32516 changed keywords, now also printing out altered size/grid/microstructures information 2013-04-16 18:00:14 +00:00
Martin Diehl 2ff0f1b93e keywords update from resolution/dimension to grid/size 2013-04-12 14:13:32 +00:00
Martin Diehl b4f67248a5 deleted two simple scripts used for debugging but with almost no use any more 2013-04-12 13:22:15 +00:00
Martin Diehl 7bcf1d6072 added ID information of creator script to header, changed keywords (resolution->grid, dimension->size) 2013-04-12 12:48:39 +00:00
Martin Diehl 4314ab236e added ID information of creator script to header 2013-04-12 11:15:17 +00:00
Martin Diehl 6f0308844f geom packing/unpacking won't throw away unknown header information any more (might contain comments) 2013-04-12 10:47:44 +00:00
Martin Diehl 0b1033d63a switched to new keywords "grid" and "size", still reads the old "resolution" and "dimension" but writes the new ones 2013-04-12 10:27:05 +00:00
Martin Diehl 770712529d one more bug fix related to scaling 2013-03-26 16:16:59 +00:00
Martin Diehl ccef9d4f73 fixed scaling option 2013-03-26 14:18:29 +00:00
Philip Eisenlohr 5b96c1d62a scaling of deformation gradient fluctuations now possible in x,y,z independently (give array). 2013-03-22 15:09:55 +00:00
Martin Diehl cd86a80c2b corrected handling of default value and cases where the deformation gradient is not f 2013-03-19 18:22:14 +00:00
Martin Diehl 43ec1d2051 added output of perceptual unfiform colormaps to GOM (DIC Aramis) format, deleted some old files in the documentation folder 2013-03-19 15:19:46 +00:00
Martin Diehl 757c3e5a04 fixed bug in averageDown and updated test 2013-03-13 16:23:02 +00:00
Martin Diehl 010d4c6e26 added script to make 27 periodic copies (3 in each dimension) 2013-03-11 13:40:30 +00:00
Martin Diehl 8a66693001 added script to convert data used by R.A. Lebensohn to spectral solver (geom, material.config) format 2013-03-05 16:31:17 +00:00
Philip Eisenlohr 0d7f1e8623 killed "margin" option, now same as all others: resolution and dimension in x and y.
can be non-square grid.
2013-02-27 18:43:53 +00:00
Philip Eisenlohr 565c532546 fixed bugs (grain index start, alpha orientation for elliptic osteons).
added option to rotate osteon relative to periodic box.
2013-02-27 10:56:30 +00:00
Pratheek Shanthraj 1cc990c7ac osteon geom and config generator 2013-02-25 17:12:13 +00:00
Martin Diehl 831ad6d9c8 added leading zeros to names of microstructures and phases, spaces caused problems during initialization 2013-02-20 14:50:01 +00:00
Philip Eisenlohr 7461e13c1e relocated spectral_quit() into driver code.
added (dummy) core_quit() for Python damask module.
2013-02-19 14:54:34 +00:00
Philip Eisenlohr 30024af6c2 polished string concatenations 2013-02-14 21:33:11 +00:00
Martin Diehl d715ec769b removed debug statements from symlink_Code.py, added autodetection for fortran compiler and disabled compiling on default 2013-02-13 18:45:49 +00:00
Christoph Kords a90f15a3d3 corrected usage of "append" (which does not copy list items but only creates references) 2013-02-13 16:00:02 +00:00
Martin Diehl cc9eb685fe fixed wrong setting of coordinates in spectral solvers and removed old python scripts for setup of code and processing 2013-02-05 12:31:44 +00:00
Philip Eisenlohr a7e7a857c3 readjusted color values to work nicely with Msh colorspace (as in ParaView) 2013-02-02 20:17:54 +00:00