Commit Graph

1330 Commits

Author SHA1 Message Date
Martin Diehl f48a446353 compatible with scipy.spatial.transform.Rotation
also introduced inplace variants and '/' as multiplicative inverse of
'*'
2021-01-03 16:08:22 +01:00
Martin Diehl 98723cb0ed need to handle special case of Re() = 0
ensuring that the real part is positive seems to be a good idea on first
sight, but it would be easier to simply acknowledge that qu = -qu
2021-01-03 15:50:15 +01:00
Martin Diehl 80b8693a66 avoid adding to existing data, i.e. when reading a file 2021-01-03 12:10:39 +01:00
Martin Diehl 5f1399acc3 consistent behavior with other classes
python dictionary operates in-place, so wrappers for out-of-place
behavior let it use like the other DAMASK classes
2021-01-03 12:09:21 +01:00
Martin Diehl 9a278daa3f copy not needed
YAML writer does not write out references anymore
2021-01-03 12:07:02 +01:00
Martin Diehl 35ca1ffb0a consistent copy functionality 2021-01-03 12:03:40 +01:00
Martin Diehl 6fe1ff8e39 fixed test for rodrigues parametrization
for angle close to 180deg, the sign of the axis does not matter
2021-01-03 11:50:45 +01:00
Philip Eisenlohr da62daf15d added test for appending rotation lists; better check for type==list 2020-12-28 12:26:09 -05:00
Philip Eisenlohr 4796afdd92 fix for broken representation of no-rotation orientations and averaging weights 2020-12-28 12:10:21 -05:00
Philip Eisenlohr d8b57680ec raise NotImplemented when using R*b instead of R@b 2020-12-21 15:47:18 -05:00
Sharan Roongta 6cc78cb41e Merge branch 'misc-improvements' into 'development'
Misc improvements

See merge request damask/DAMASK!302
2020-12-18 15:19:04 +01:00
Martin Diehl 35f9861818 Fortran standard is 2018
will not work for older compilers
2020-12-18 15:19:04 +01:00
Martin Diehl 5fb0e4908b Examples reflect actual behavior 2020-12-18 07:09:05 +01:00
Philip Eisenlohr 403ac693da need to pass init argument to dict superclass 2020-12-17 18:08:55 -05:00
Philip Eisenlohr e11be7e600 preinitialize a ConfigMaterial object with 'constituents','homogenization','phase' keys 2020-12-17 10:49:33 -05:00
Martin Diehl 2dd520b4a2 P_aim should be independent from P_av
P_av is not defined after restart or cutback. Restart with change of
load case is probably still an issue
2020-12-15 08:06:50 +01:00
Martin Diehl aad123f41b Merge branch 'table-getitem' into development 2020-12-12 19:58:42 +01:00
Philip Eisenlohr 36e4042f0b removed "where" method from Table class 2020-12-11 19:31:19 -05:00
Martin Diehl 2e28bc127a better message in case that GUI is not possible 2020-12-10 23:44:54 +01:00
Martin Diehl a881e6e57a Merge remote-tracking branch 'origin/development' into misc-improvements 2020-12-10 23:41:59 +01:00
Martin Diehl 32c2de6b91 Ensuring regular spacing for grid 2020-12-10 22:47:30 +01:00
Martin Diehl 4286fc3b82 Merge branch 'development' into misc-improvements 2020-12-10 20:21:00 +01:00
Martin Diehl 9b6f5ba9c6 Merge branch 'development' into compressed-hdf5 2020-12-10 00:23:22 +01:00
Martin Diehl de1708b20a missing renames + better help 2020-12-08 00:36:41 +01:00
Martin Diehl 78192ef3fd clearer naming + better comments, thanks to @p.eisenlohr 2020-12-07 17:49:37 +01:00
Martin Diehl 429b84004d more filters
- shuffle: significanlty better compression
- Fletcher32: checksum to detect errors

computational overhead is very small
2020-12-06 19:57:00 +01:00
Martin Diehl 52e3fb50bc compress.
Datasets are chunked along first timension. Chunk size (1MB for real) is
probably not optimal
2020-12-06 11:44:52 +01:00
Martin Diehl 000de75617 write orientation as plain array, not derived type 2020-12-06 08:36:16 +01:00
Martin Diehl c80e1c5420 less confusing in the standard case, more helpful in the special case 2020-12-05 10:47:42 +01:00
Martin Diehl ed286ee09f Merge branch 'rename-grid-2' into misc-improvements 2020-12-05 09:50:46 +01:00
Martin Diehl 171d642dbd rename: Geom -> Grid 2020-12-04 07:50:47 +01:00
Martin Diehl 0fdefa5e78 renames:
after the rename of "grid" to "cell", the name cell should not be used
for the coordinates of the cell centers. In agreement with the names
x_p/u_p for point positions/displacements, now the "point" is used to
refer to the materialpoints (i.e. cell centers)

Additionally, "_node"/"_point" are now suffixes to
"coordinates"/"displacements".

Finally, "coords" is renamed to "coordinates"
2020-12-03 23:59:37 +01:00
Martin Diehl ac0a20696c rename: grid -> cells 2020-12-03 22:16:34 +01:00
Philip Eisenlohr ccf1a849fa Merge branch 'ShowGrainBoundaries' into 'development'
Show grain boundaries

See merge request damask/DAMASK!297
2020-12-03 17:13:15 +01:00
Philip Eisenlohr 4877334986 added getitem and where functionality to Table 2020-12-02 19:25:54 -05:00
Philip Eisenlohr 97df1ab9b3 reinstated write functionality 2020-12-02 13:04:56 -05:00
Martin Diehl d3a5979d25 meaningful result 2020-12-02 14:45:47 +01:00
Martin Diehl c880052250 avoid evil eval 2020-12-02 14:37:44 +01:00
Martin Diehl aa8f30d746 Merge branch 'development' into ShowGrainBoundaries 2020-12-02 12:50:04 +01:00
Martin Diehl 1c2cdbd5a1 support of all standard numpy types
+ tests
2020-11-30 12:33:21 +01:00
Martin Diehl 813ef927c4 consistent with "save_XDMF" (capitalized) 2020-11-30 09:28:46 +01:00
Martin Diehl 4d2bf37193 Merge branch 'lattice-structure-rename' into ShowGrainBoundaries 2020-11-29 20:53:58 +01:00
Martin Diehl 1d05edd7b3 fixes:
- need to get crystal structure as attribute in test (generic function
  was removed, because the crystal structure is in general not the same
  over the whole domain)
- consistent sorting of attributes
2020-11-29 09:06:47 +01:00
Martin Diehl f48f5cb0e8 bugfix/better readable 2020-11-29 08:58:48 +01:00
Martin Diehl c712332e87 using consistent names for Bravais lattice in Fortran and Python 2020-11-28 22:38:12 +01:00
Martin Diehl a8da1e5ed9 Paraview 5.9 supports datasets of arbitrary length in XDMF 2020-11-27 22:57:15 +01:00
Martin Diehl 3c1f1af009 more then one direction in file 2020-11-27 20:16:06 +01:00
f.basile c2be41b9f6 remove import vtk because unused 2020-11-25 12:53:29 +01:00
f.basile 31df4c04c8 added test 2020-11-25 12:51:52 +01:00
f.basile eb085958f8 polishing 2020-11-25 11:32:07 +01:00
f.basile cd58278a01 returns vtk object 2020-11-25 10:39:58 +01:00
f.basile 7abc32b09c alternative for if d_s== , not sure it improves the previous 2020-11-24 19:59:46 +01:00
f.basile c8b1f8d9f1 shortest possible way i found to include directions in an elegant way 2020-11-24 17:49:58 +01:00
Francisco Jose Gallardo Basile 030062d293 Merge branch 'unit-in-vtk' into 'development'
Unit in vtk

See merge request damask/DAMASK!288
2020-11-24 16:21:01 +01:00
Martin Diehl 7fa98ef084 DEcode bytes into str 2020-11-23 20:17:04 +01:00
Martin Diehl 5ab2847b36 polishing 2020-11-23 20:06:34 +01:00
Martin Diehl cbe8160e13 Merge remote-tracking branch 'origin/development' into vector-mechanics 2020-11-23 19:55:34 +01:00
Martin Diehl f85dba2835 small polishing 2020-11-23 19:43:19 +01:00
Martin Diehl 287d44c5df Merge remote-tracking branch 'origin/development' into unit-in-vtk 2020-11-23 19:19:02 +01:00
Franz Roters 7356330cf6 Merge remote-tracking branch 'origin/new_names_result' into development 2020-11-23 11:49:15 +01:00
Sharan Roongta c58f9f23a1 read old version while resolving merge conflicts 2020-11-22 14:32:32 +01:00
Sharan Roongta 24fabdec22 Merge branch 'development' into vector-mechanics 2020-11-22 12:02:29 +01:00
Martin Diehl 2de3a6a205 fits better to stretch_left/right 2020-11-19 22:46:52 +01:00
Martin Diehl a87596cefc return rotation type (ensures proper rotation) 2020-11-19 22:36:19 +01:00
Philip Eisenlohr 662a033d91 adapted to VTR geom files 2020-11-19 14:26:15 -05:00
Philip Eisenlohr a82b1adc14 Merge branch 'geom-load-ASCII-autoshift' of magit1.mpie.de:damask/DAMASK into geom-load-ASCII-autoshift 2020-11-19 12:24:09 -05:00
Martin Diehl a4b5c2a537 shorter (but still self-explanatory) name 2020-11-19 15:20:44 +01:00
Martin Diehl 6e5cb60132 general tensor functionality 2020-11-19 15:16:01 +01:00
Martin Diehl 894a8de9f9 avoid name clash: as_Rodrigues_vector(vector = ...) 2020-11-19 14:31:14 +01:00
Martin Diehl 1c07152b96 sorted alphabetically 2020-11-19 14:05:59 +01:00
Martin Diehl 20d0732b2e output unit to XDMF/vtk 2020-11-19 13:45:40 +01:00
Martin Diehl af3a87b197 adjust to new auto-convert of 1-based geom files 2020-11-19 11:34:55 +01:00
Martin Diehl 5a5dd24687 removed aliases 2020-11-19 10:50:14 +01:00
Martin Diehl 903c185ee6 distinguish 'file not found' and 'invalid file' 2020-11-19 10:39:41 +01:00
Martin Diehl c74e57f225 vtk error handling is not very helpful 2020-11-19 09:59:39 +01:00
Martin Diehl 96826dca73 Geom.load_ASCII now auto-shifts material indices 2020-11-19 09:40:19 +01:00
Philip Eisenlohr cb22c34db2 Geom.load_ASCII now auto-shifts material indices 2020-11-18 18:25:25 -05:00
Martin Diehl b9b26cb2cc output results for all constituents 2020-11-18 23:36:02 +01:00
Martin Diehl 5359e05fd3 always merge homogenization results 2020-11-18 23:17:12 +01:00
Martin Diehl b885e38b3f better readable 2020-11-18 22:12:23 +01:00
Martin Diehl 4bf802a28e fixed documentation 2020-11-18 21:51:37 +01:00
Martin Diehl 843d7d8cac Merge remote-tracking branch 'origin/development' into new_names_result 2020-11-18 21:37:52 +01:00
Martin Diehl 7352431143 vectorized 2020-11-18 20:10:04 +01:00
Martin Diehl 564ee6c96a make uvw/hkl keyword-only arguments
avoid to prefer one over the other, since they are mutually exclusive
2020-11-18 16:45:53 +01:00
Martin Diehl c60d9cde2a merge 'mechanics' datasets
was like that for 'generic'. Needs detailed discussion in future
2020-11-18 15:52:55 +01:00
Martin Diehl 838a4ea592 [skip ci] fix for scalar values 2020-11-18 14:57:32 +01:00
Martin Diehl 870c0f7aca removed aliases
required bump of DADF5 version
2020-11-18 14:53:11 +01:00
Martin Diehl 1c9028d0b1 simplified 2020-11-18 14:01:52 +01:00
Martin Diehl 89c748fdf1 Merge remote-tracking branch 'origin/development' into vector-mechanics 2020-11-18 13:55:05 +01:00
Martin Diehl 9a1e8e3c38 for the transition period 2020-11-18 13:28:53 +01:00
f.basile 7291b95055 avoid pyflake for blank line 6 final 2020-11-18 12:29:10 +01:00
f.basile ee5822b721 avoid pyflake for blank line 5 2020-11-18 12:25:08 +01:00
f.basile 4dbfad74cb avoid pyflake for blank line 4 2020-11-18 12:24:17 +01:00
f.basile eda3837874 avoid pyflake for blank line 3 2020-11-18 12:21:09 +01:00
f.basile c681101136 avoid pyflake for blank line 2 2020-11-18 12:19:47 +01:00
f.basile 33aa888fc7 avoid pyflake for blank line 2020-11-18 12:17:05 +01:00
f.basile e8f82d52cc fix bug 2020-11-18 12:16:08 +01:00
f.basile be206d28b3 vectorized and more options 2020-11-18 12:14:12 +01:00
Martin Diehl 6bedd84759 self-explanatory names 2020-11-18 08:15:04 +01:00
Martin Diehl cd8434b991 Merge remote-tracking branch 'origin/development' into python-improvements 2020-11-16 22:57:49 +01:00