85d4a37d95
moved public data res,size and homog from mesh to DAMASK_spectral_utilities (as grid and geomSize)
2013-05-08 15:52:29 +00:00
1c2c9b8436
ip neighborhood was screwed up for spectral solver as of rev 2332 due to new "mesh_spectral_ipNeighborhood": used to have fastest index in z direction although it should be in x direction!
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also removed output of node twins in "mesh_tell_statistics" when using spectral solver, since not allocated
2013-05-07 17:50:58 +00:00
fb5f94812f
corrected format strings in mesh_read_meshfile and mesh_write_meshfile
2013-05-07 13:27:51 +00:00
c7f987a3c1
"unitlength" parameter, which determines the physical size of the mesh, now available as a global mesh variable "mesh_unitlength" and written to the .mesh file during init.
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Hence, it is available to the marc_deformedGeometry.py script via "mesh_init_postprocessing()" and "mesh_get_unitlength()", so no need for setting the scaling of the displacement vectors explicitly through an option; now displacements and nodal positions are always consistent
2013-05-07 13:06:29 +00:00
2a5dfbbfa0
removed #define Marc and substituted #ifdef Marc by #ifdef Marc4DAMASK which is defined by either the submit scripts or DAMASK_marcXXXX.f90
2013-04-30 09:49:30 +00:00
cc72c0b17b
added two new scripts:
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"marc_extractData" is a simple variant of the "postResult" script that extracts all data from a macro *.t16 file (quadratic elements not yet supported) and writes it into an asciitable
"addDataToGeometry" searches for corresponding *.txt and *.vtk file in a given directory and adds the data from the *.txt file as SCALARS to the *.vtk file
first script needed an additional function in mesh that returns the corresponding node of a given ip in a specific element
2013-04-28 20:56:17 +00:00
f18c6c5903
fixed bug causing no fluctuation in case of using with 3Dvisualize
2013-04-25 14:43:20 +00:00
650b7ef4ac
added python script that produces vtk files with the (node based and ip based) deformed mesh from marc output file
2013-04-23 18:30:56 +00:00
49ef6d7193
spectral_build_neighborhood now "hidden" in spectral compile part. (should not interfere with Marc/Abaqus compile anymore)
2013-04-22 09:01:58 +00:00
ca99274a5d
fluxes now always periodic for spectral solver, no need to explicitly state this in the geom file by use of "periodic" keyword
2013-04-22 08:32:51 +00:00
60fa91be9a
calculation of cellnode positions now available in python via damask.core
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first call damask.core.mesh.mesh_init_postprocessing(meshfilename) to initialize all necessary mesh variables
then damask.core.mesh.mesh_build_cellnodes(nodes) calculates the cellnode positions for a given list of node positions
the meshfile that is needed for the init is created automatically by mesh_init in DAMASK
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
For marc simulations, run
./code/setup/setup_code.sh
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
2013-04-21 18:48:59 +00:00
e8f238a413
added specialized ipNeighborhood calculation for spectral solver case
2013-04-19 16:04:20 +00:00
12760026a4
last version still did not compile: IO_write_jobFile was not used by mesh_init
2013-04-19 13:02:37 +00:00
55bc741d1d
last version did not compile: fixed small typo in mesh_init
2013-04-19 12:59:45 +00:00
4bc5e6717b
fixed small bug when calculating mesh_Ncells
2013-04-19 12:41:06 +00:00
103c770ee6
fixed bug in cell generation: "FE_Ncellnodes" was not correct for elem type 17 and 136
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too much memory allocated for mesh_cell
2013-04-18 17:56:14 +00:00
6b46a9c338
introduced output of initial geometry (vtk file) to mesh
2013-04-18 16:40:49 +00:00
8b2d9d8155
further improvements on implementing the plain mode
2013-04-16 17:07:27 +00:00
2a6ac44496
Major restructuring of mesh.f90 due to introduction of "cells". A cell is the volume (area in 2D elements) that surrounds an ip. It is described by up to 8 cell nodes and is used to calculate ip volume, area, and face normals. It can also be used to generate a mesh for e.g. paraview that contains ip output as cell centered data.
...
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
For marc simulations, run
./code/setup/setup_code.sh
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
2013-04-15 08:13:20 +00:00
eaccf88e12
fixed bug that was introduced in the element type mapping in version 2305
2013-04-10 13:22:02 +00:00
ddcc795461
allowed arbitrary grid (formerly know as resolution), i.e. any integer>1 in each dimension is possible.
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removed square root correction for divergence (doesn't make sense)
fixed FFT debug of spectral solver
2013-04-10 10:19:16 +00:00
4338cd13bc
- added element type 54 for macro (2d 8node 4ip reduced integration)
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- automatically raising error for unknown element type inside mapping function
2013-04-10 09:38:40 +00:00
338e338c9a
- fixed bug in volume calculation of 2d elements
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- subroutine "mesh_build_ipVolumes" uses openmp parallelization
2013-04-10 08:24:53 +00:00
d80d416c32
2d elements now have a volume corresponding to a thickness of 1; used to have zero volume
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now also 2d elements can be used with nonlocal model
2013-04-09 18:07:30 +00:00
7b5a202e8c
enabled alternative (and soon standard) keywords grid (resolution) and size (dimension).
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removed errors for odd resolution
2013-04-08 14:22:32 +00:00
39a70e8a19
fixed bug in coordinate calculation when no average F was given (scaled wrong by ncp_elems**2)
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other changes: just polishing + some more comments
2013-03-27 12:28:55 +00:00
b6aecdac17
corrected debugging output of node twins
2013-03-27 10:25:37 +00:00
02f092492e
updated copyright header
2013-03-22 17:35:05 +00:00
5b96c1d62a
scaling of deformation gradient fluctuations now possible in x,y,z independently (give array).
2013-03-22 15:09:55 +00:00
59da88460e
preparation for introduction of plain mode and restructuring of calc modes for CPFEM_general
2013-02-27 20:41:14 +00:00
07ff1f7c93
reporting current time for most module inits
2013-02-25 16:34:59 +00:00
f0b4281400
removed unused variables, added pure statements, and declared external functions as external (using gfortrans debug option)
2013-02-11 10:43:45 +00:00
a89efaa4a6
added missing bracket and substituted one more forall by do loop
2013-02-09 08:23:47 +00:00
e644c6dbc5
improved reading in of values, now only warnings in case of problematic entries in material.config
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divergence calculation sqrt scaling optionally introduced for basic scheme spectral solver
2013-02-08 15:55:53 +00:00
eacf6f1196
now also fixed the abaqus part
2013-02-07 10:45:10 +00:00
a036f1eb3a
as some IO functions are no longer pure I changed some forall statements to ordinary do loops
2013-02-07 08:52:47 +00:00
79e7deca55
introduced dedicated calculation of interface normals in IP neighborhood. (2D elements did not work so far..!)
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fixed definitions of some (2D) interface planes to have all normals pointing outward.
removed "int, private :: i" defined for spectral compilation.
2013-02-05 13:27:37 +00:00
c2495d0d4a
changed misplaced private to public statement and renamed qsort to math_qsort
2013-02-01 07:26:21 +00:00
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
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changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
6ce78cf806
gfortran now detects "call flush" statements, removed the last of them in mesh.f90
2013-01-23 21:50:01 +00:00
c6a79d2b3d
divergence_correction for basic solver variants has now 3 possibilities:
...
0: uncorrected, slope per sidelength (physical dimension) e = res/dim
1: corrected by sidelength, slope per unitlength e = res/1
2: corrected such that distance between FPs e = 1
alway regarding the medium length of x,y,z direction
2013-01-16 10:40:53 +00:00
19d86ca06a
removed unnecsessary omp statements, removed one transpose in constitutitve
2013-01-08 11:09:20 +00:00
b1f28ba5e7
made restart working for all solvers and added corresponding test
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corrected error handling for FFT based function in case of odd numbers etc.
2012-12-14 17:30:22 +00:00
d4a59541ad
removed write statements which were introduced for "debuging"
2012-11-19 15:12:11 +00:00
d9a98417ca
switched element library to geomType based.
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saves to copy same geometry description for different elements that are essentially similar regarding the IP number but differ in total node count.
introduced quadratic tetrahedron (Marc element 127 -- element 157 might also work, but did not perform well in fully elastic calc so far)
2012-11-15 22:45:20 +00:00
7e683ca7c3
removed coordinates from call to CPFEM_general and introduced direct storage of coordinates to mesh_ipCoordinates
2012-11-14 14:38:10 +00:00
3c53f3ec9a
last version contains buggy mesh.f90; corrected typo in initialization
2012-11-09 07:52:44 +00:00
366ac28694
parallelized mesh_build_subNodeCoords and mesh_build_ipCoordinates
2012-11-09 07:47:14 +00:00
5214b93342
fixed bug when reading in geometry for spectral solver
2012-11-06 17:16:01 +00:00
5b6baa7c0d
introduced distinction between ip coordinates and cell center coordinates; the former can be globally calculated by subroutine mesh_build_ipCoordinates, the latter locally by the function mesh_cellCenterCoordinates; renamed mesh_ipCenterOfGravity to mesh_ipCordinates
2012-11-06 14:37:13 +00:00
93cc466749
third entry in mesh_ipNeighborhood stores the neighbor_index that points from each neighbor back to the central ip; needed in nonlocal model
2012-10-24 14:03:02 +00:00
b99a846503
new scaling feature in numerics (unitlength) did not scale the reference coordinates in the first place; now this is taken care of in mesh.f90, so scaling should work properly
2012-09-25 16:21:58 +00:00
96ba5ecae4
moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
...
f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
b96df9987e
fixed reading/writing of integer arrays with function for real arrays
2012-08-16 14:55:23 +00:00
08c7be7d15
adaptive regrid now working, updates F and F_lastInc based on mapping.
2012-08-10 15:48:27 +00:00
7e3a837640
moved calculation and output of geometry related data to mesh.f90, moved output of command line related information to DAMASK_spectral_interface.f90.
...
improved new solver structure (use with make SOLVER=NEW)
2012-08-06 12:43:05 +00:00
ee1bde0cd7
enabling regridding more than once by introducing deallocation of arrays
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added J2 test (stub from Taymour)
2012-07-31 15:37:49 +00:00
9c0a161ec0
in case of regridding, undeformed configuration is written out correctly. Restart improve by reading in additional data from converged step.
2012-07-24 12:21:41 +00:00
4d09ef0648
changed variable name "debug_what" to "debug_level"
2012-07-05 09:54:50 +00:00
bd462d12c6
fixed some bugs in the regridding routine
2012-06-20 18:33:20 +00:00
d650972904
corrected some bugs concerning the regridding
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prevented FEsolving from potentially write to a none existing file
started to introduce petsc into the make chain (nothing happens if PETSC_DIR is not set)
2012-06-20 12:49:46 +00:00
481268c8c2
fixed closing of file (unit 222) statement in FEsolving.f90
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added missing keyword in mesh.f90 with ifndef Spectral statement (needed for Marc and Abaqus)
2012-06-19 14:33:24 +00:00
06be437bc9
added minRes to regridding function and writing out of new geometry file
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updated f2py wrapper to enable the use of init functions.
added 2 new error messages to io
2012-06-19 13:31:15 +00:00
b2fd3e1180
introduced preprocessor identifiers Marc, Abaqus, and Spectral to enable conditional compilation. This allows deleted dummy functions that are used by one solver only.
...
Mainly affected modules are IO and mesh. Most of the changes in mesh result from reordering the functions when grouping them depending on their solver.
Further advantage is that FE solver do not need FFTW and kdtree2 anymore. The include files for these two libraries moved to DAMASKROO/lib now as I figured out how to use a include path in the Makefile.
Put all the files I got when testing compilation with abaqus in a folder which to become the abaqus compilation test.
2012-06-15 16:10:21 +00:00
cec3357e8f
corrected bug causing wrong element construction when using spectral solver. Also improved error messages for invalid resolution, dimension, and homogenization.
2012-05-21 09:06:02 +00:00
fbd075dc6e
corrected automatic determination of resolution
2012-05-08 15:12:43 +00:00
c752dd5474
regridding is now working, changed the subroutine into a function
...
changed order of arrays in nearest neighbor search to make it fortran fast
constitutive.f90 and homogenization.f90 write state size out during initialization
setup/setup_processing.py is using byterecl to be compatible with binary files written out by solver
2012-05-08 14:57:06 +00:00
4b18278781
reworked neares neigbor search subroutine, now also works for voronoi tesselation (general nn search in periodic cell)
2012-05-04 13:07:37 +00:00
83e89fba3c
improved regridding, especially interfacing to python (also for nearest neighbor search)
2012-04-24 17:02:27 +00:00
d2c4874db3
several small corrections/polishing
2012-04-20 11:58:41 +00:00
dbc5a3a3ce
subnodeparent check is now running only over actual number (not max) of parent nodes...
2012-04-17 09:19:44 +00:00
8c559cbdc9
fixed bug concerning file handling.
2012-04-11 18:46:36 +00:00
37fa6c2e14
merged code for python and spectral solver interfacing (shared most of it anyway).
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put functionality for getting header information (dimension, homogenization, resolution) in functions in mesh.f90
2012-04-11 17:28:08 +00:00
f2da887899
added missing ":" in mesh.f90, introduced absolute stress tolerance for spectral solver in numerics.config/numerics.f90
2012-04-11 12:57:25 +00:00
f20cecd421
integrated subroutine for regridding into mesh.f90 and made it available for python
2012-04-10 15:15:46 +00:00
bd9667bd4b
added new, flexible debugging scheme.
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now all modules have their own debug specification.
compiles and runs, I hope nothing is broken
did a lot of polishing
2012-03-08 20:25:28 +00:00
87a83d82b7
changed assumed arrays (:) to properly defined ones (gfortran 4.7 was complaining) and remove use statements that are not needed
2012-02-21 15:39:36 +00:00
6c0f9d163b
polishing: removed variable names like 'unit' and 'data' that are keywords of fortran and ensured that integer and real precision matches independent of machine standard.
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removed cut_off parameter for damask_spectral
removed outpot of derived divergence measures and added RMS output in brackets
added comments and options to the makefile
2012-02-15 18:58:38 +00:00
c786336af3
reordered (and partly redistributed) error message identifiers, deleted those which are not in use anymore.
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all constitutive as well numerics now raises an error, if an unknown keyword is found in the respective config file
2012-02-13 17:41:27 +00:00
37ac7bf1b4
fixing inconsistencies in variable assignments
2012-02-10 11:56:05 +00:00
bbf4f25898
renamed subroutine "mesh_marc_get_mpieOptions" to "mesh_get_damaskOptions" which is now also used for abaqus and spectral input files. The only available option so far is "periodic", which allows for periodic fluxes in the specified direction. Examples for usage (add the following lines to the respective input file, in case of spectral file this goes into the header):
...
- periodicity in x and z direction for marc:
$damask periodic x z
- periodicity in y direction for abaqus:
**damask periodic y
- periodicity in x and y direction for spectral:
periodic y x
2012-02-03 12:37:52 +00:00
800e291240
made code standard conform to Fortran 2008 (ignoring warning concerning comments beyond character 132). Basically, changing "x" format specifier to "Nx" ("1x") plus removing $ format specifier
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added compiler switches for gfortran and ifort to check for standard conformity
old gnu compilers <4.4 are not longer supported because they don't provide the c binding for fftw
2012-01-31 19:18:55 +00:00
80583fefb5
added compilation_info.f90, to store compilation date,time and compiler info in each file
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added #include statement at each init() routine
2012-01-31 14:54:49 +00:00
1032ff3d47
corrected definition of element base node, which was still flawed
2012-01-19 14:15:26 +00:00
6c2a61e489
corrected node coordinates and sorting for spectral method
2012-01-17 16:53:56 +00:00
f3bb2271c9
parsing of spectral geom file now accepts two-dimensional microstructure definition (plus range indications by 'x to y')
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For instance:
1 2 3 4
5 6 7 8
9 10 11 12
...
2012-01-12 17:01:24 +00:00
2ea3c68d3f
removed spectralPicturemode
2012-01-12 10:36:17 +00:00
680ba9082f
removed deadlock when calling IO_warning(33)
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polished IO_error and IO_warning
checked OpenMP critical statements in DAMASK_spectral.f90
corrected writing of headed in DAMASK_spectral.f90
2011-11-02 14:38:42 +00:00
6cf464b8a9
added 'spectralPictureMode' for reading in geometries with 1to1 mapping (e.g. EBSD pattern)
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polishing
!incremental update, wait for commit of damask_spectral.f90 before checking out
2011-10-18 09:20:29 +00:00
c35ea33f8e
did a lot of polishing:
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- removed unnecessary "return" before end of subroutine or function:
- changed undetermined array length (:) to (1:3)
To prevent problems with some code analysing tools:
- "3D oneliner loops" (with ";) only for "do" and "enddo" at the same time
- removed line continuation in OMP statements
made the makefile more flexible, removed heap-arrays switch
2011-09-13 15:54:06 +00:00
1ffb59a96a
Calculation of current ip volumes now working. Crystallite output also reflects current grain volume, not reference volume. However, this is only available for Marc. Abaqus and spectral method still return the reference ip volume. The ip coordinates though are correctly updated for all solver types.
2011-08-10 16:37:17 +00:00
06a4ac2565
fixed bug (segmentation fault) occurring for non-renumbered meshes: ipNeighborhood building did use FE IDs of twin nodes to address memory -- dangerous..!
2011-07-31 15:42:59 +00:00
a26d9c844b
max size of crystallite result is now based on actual use within the mesh, not just picking the largest chunk from the material.config file...
2011-06-08 09:16:48 +00:00
08d39342e4
reworked restarting for compatibility with abaqus (not yet fully working)
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added new orientation feature for direct simulation:
component type (random) asigns random orientation to an entire grain
2011-05-28 09:44:43 +00:00
cac45cff96
ip coordinates are now updated every cycle; this is needed for the nonlocal internal stress fields
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* Marc: node displacements are added to initial node coordinates (mesh_node0) to get current node positions (mesh_node), then ip coordinates are deduced
* Abaqus: ip coordinates are directly updated, no update of node coordinates!
* Spectral: for the moment no update of either ip or node coordinates! passing only dummy values with initial ip coordinates
2011-05-24 15:57:59 +00:00
fa98133f8e
renamed interface from "mpie_interface" to "DAMASK_interface"
2011-05-11 17:01:03 +00:00
e5a2d829b0
new substructure with 'include' and 'config' directories
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renaming of mpie_... to DAMASK for main usersubroutines
extension of element outputs from 5 to 8 digits (FFT!!!)
2011-05-11 16:38:45 +00:00
7d84a0911e
removed unused variables
2011-04-13 14:16:22 +00:00
e00d073ee3
added new 2D triangle elements
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added some sourcecode commenting on internal database formats
corrected database to allow for ipVol and Area calc in 2D element cases
2011-04-06 08:35:37 +00:00
fcdb805225
added copyright text to all f90 (free) format files
2011-04-04 14:09:54 +00:00
Martin Diehl