Martin Diehl
d0c7f8b934
texture is typically the more interesting information
...
therefore, but it to the top
2019-05-30 14:05:45 +02:00
Martin Diehl
8380071564
using geom class
...
- dropped the use of the material class as it does not allow to have
empty phase and crystallite. The material.config class needs a severe
refurbishing (no crystallite, use orderedDict instead of hand written
solution, drop of texture components). Probably best solution is to
postpone this until we have a yaml/json reader for Fortran.
2019-05-30 13:30:38 +02:00
Martin Diehl
7d07a3752f
polishing
2019-05-30 13:30:18 +02:00
Martin Diehl
461611cde7
polishing
2019-05-30 11:26:47 +02:00
Martin Diehl
49c3903cc7
explicit loop for simpler code
...
- no invalid combintations any more (allow to move the original
microstructure out of the new canvas)
- handling of origin needs discussion. When we want to recover the old
behavior, the origin might be located outside of the new geometry
2019-05-30 11:26:07 +02:00
Martin Diehl
e974bb9c43
similar structure for building blocks
2019-05-30 10:45:17 +02:00
Martin Diehl
510b55df50
several improvements
...
- more error checking
- order of points can be arbitrary also for microstructure input
- grouping of same orientation/phase combinations
2019-05-30 10:33:01 +02:00
Martin Diehl
931fa9d36a
standardized and cleaned
...
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
Martin Diehl
07276d511c
modern python formatting
...
- 2 digits should be precise enough for euler angles
- no need to pad grain ID with leading zeros
2019-05-30 10:03:55 +02:00
Martin Diehl
73df615ff3
numpy meshgrid can do this now
2019-05-30 09:45:30 +02:00
Martin Diehl
4e0e5a2329
new python formatting style
2019-05-30 09:41:22 +02:00
Martin Diehl
f30eda0267
no need to loop over files
...
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
Philip Eisenlohr
cdc8338347
full (not periodic) mirroring is geom_mirror default behavior
2019-05-29 20:22:29 -06:00
Philip Eisenlohr
d79f0c6290
replace geom_canvas --blank with geom_fromScratch
2019-05-29 20:02:06 -06:00
Martin Diehl
fd9801ba09
StringIO not needed
2019-05-29 19:44:38 +02:00
Martin Diehl
d7e8a66746
polishing
2019-05-29 14:18:11 +02:00
Martin Diehl
16bd5294aa
loop order as intented
2019-05-29 14:06:39 +02:00
Martin Diehl
78f30684f8
moderized
...
needs some polishing with respect to array orders
2019-05-29 09:40:56 +02:00
Martin Diehl
6836a2eae8
better readable
2019-05-29 08:04:01 +02:00
Martin Diehl
dfc2b47abc
better readable
2019-05-29 08:01:00 +02:00
Martin Diehl
8ee23b37b2
should not be part of the repo
2019-05-29 07:52:44 +02:00
Martin Diehl
bb6f54963a
save some memory (avoid copies if not needed)
2019-05-29 07:49:43 +02:00
Martin Diehl
9f68923038
restored old behavior
...
save some ressources by avoiding copies.
much slower than old version, better cast formula into meshgrid again
2019-05-29 07:38:11 +02:00
Martin Diehl
2eb964b1ea
simplified
...
needs some manual checking and proper test
2019-05-28 23:49:11 +02:00
Martin Diehl
100a2031d3
[skip ci] no white space needed
2019-05-28 07:55:24 +02:00
Philip Eisenlohr
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
Martin Diehl
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
Martin Diehl
59c6c5cfe4
not needed anymore
...
essentially, (gauss) is an Euler angle triplet
2019-05-27 10:49:50 +02:00
Martin Diehl
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
Martin Diehl
d9ab87cfde
crystallite will be removed soon, error handling is done by geom class
2019-05-27 08:35:24 +02:00
Martin Diehl
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
Martin Diehl
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
Martin Diehl
15d5a7ae28
don't access attributes directly
2019-05-26 22:08:14 +02:00
Martin Diehl
f251cdb746
simplified
2019-05-26 22:07:50 +02:00
Martin Diehl
af493cf9fd
using class
...
needs more memory, but should be faster and is better readable
2019-05-26 21:32:08 +02:00
Martin Diehl
99da46fda8
polished
2019-05-26 20:36:41 +02:00
Martin Diehl
657a30c2f5
using new functionality
2019-05-26 18:51:27 +02:00
Martin Diehl
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
Martin Diehl
34f7bbe2a0
'blank' option does not fit to flow of script
...
seeds_fromRandom -N 1 | geom_fromVoronoiTessellation -g 30 30 30 -s 1 1 1 > file.geom
or a few lines of python code give the same results
2019-05-26 13:06:22 +02:00
Martin Diehl
e7b8ae08d0
polishing
2019-05-26 12:14:48 +02:00
Martin Diehl
974f67ffdc
no frills
2019-05-26 12:06:51 +02:00
Martin Diehl
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
Martin Diehl
a242382bed
Merge branch 'geometry-class' of magit1.mpie.de:/damask/DAMASK into geometry-class
2019-05-26 09:19:29 +02:00
Philip Eisenlohr
b13aa799c3
updated error message
2019-05-25 17:00:41 +02:00
Martin Diehl
c89d344236
polishing
2019-05-25 13:51:05 +02:00
Martin Diehl
2b7d95f800
was accidently commited
...
gives different results due to interpolation from scipy
2019-05-25 12:09:09 +02:00
Martin Diehl
c92969787a
geom Class was updated
2019-05-25 11:56:06 +02:00
Martin Diehl
94f85b7f33
better readable
2019-05-25 10:45:58 +02:00
Martin Diehl
fc1f65c34e
works for dtype='float'
2019-05-25 10:36:46 +02:00
Martin Diehl
875643c363
same style
2019-05-25 10:24:45 +02:00
Martin Diehl
17eb0d1b20
using new class
2019-05-25 08:48:44 +02:00
Martin Diehl
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
Martin Diehl
6c7f7c77da
specifying non-existing or invalid files is an user error
...
this is the standard behavior for common unix tools, no need to make an
exception here
2019-05-25 08:24:32 +02:00
Martin Diehl
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
Martin Diehl
420abfa162
use new class
2019-05-24 22:34:27 +02:00
Philip Eisenlohr
eb13fbc0ce
streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max
2019-05-23 13:03:24 -04:00
Philip Eisenlohr
e6cec6ecbe
added option to reverse inside/outside of primitive body
2019-05-23 12:49:03 -04:00
Martin Diehl
ed7423a3d6
bug fixes
2019-03-10 08:16:01 +01:00
Martin Diehl
67619fa92a
consistent definition of axis angle
2019-03-09 20:18:28 +01:00
Martin Diehl
b84d4f1b6a
improved error handling/clearer messages
2019-03-05 10:58:57 +01:00
Philip Eisenlohr
e030038b73
[skip ci] added --blank option to create fresh canvas (from nothing)
2019-02-27 19:37:38 -05:00
Eureka Pai
e401c21266
dropped obsolete option --inplace from geom_check
2019-02-25 18:30:45 -05:00
Martin Diehl
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
Martin Diehl
0d7fd587e3
direct translation from DREAM.3D to DAMASK geom
...
needs test
2019-02-24 12:59:10 +01:00
Martin Diehl
903edcd429
do not patronize the user, rather give hints
2019-02-24 10:31:08 +01:00
Martin Diehl
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
Martin Diehl
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
Martin Diehl
a8e8b75cc0
use new rotation class
2019-02-23 22:13:24 +01:00
Martin Diehl
fff377de7f
initial simplification.
...
Should be able to generate from table containing either <microstructure>
or <texture> and <phase>
2019-02-23 22:06:31 +01:00
Martin Diehl
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
Martin Diehl
e4bb61c9d9
transition to new orientation class/DREAM.3D
2019-02-23 11:37:09 +01:00
Martin Diehl
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
Satyapriya Gupta
3bec76e781
can now deal with 1x1x1 geoms
2019-02-19 12:06:46 -05:00
Martin Diehl
25727bfa52
using CamelCase
2019-02-19 10:32:18 +01:00
Martin Diehl
27ebe1f665
improved documentation
2019-02-17 08:17:40 +01:00
Philip Eisenlohr
dc133344b6
[skip ci] migrated to python3 compatibility
2019-02-14 18:44:06 -05:00
Philip Eisenlohr
742d58cfce
added ASCIItable tests to CI pipelining
2019-02-14 18:24:09 -05:00
Martin Diehl
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
Martin Diehl
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
Martin Diehl
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
Martin Diehl
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
Martin Diehl
da115ca9d4
probably never used and outdated (python2.7)
...
doing the same conversion via DREAM.3D will be available soon
2019-01-16 17:51:37 +01:00
Martin Diehl
c5dabbb68f
correct comment sign
...
the # indicates the end of a list
2019-01-09 16:31:00 +01:00
Martin Diehl
0dca8d2740
compatible to python 3 and mentat >= 2017
2019-01-09 16:28:21 +01:00
Philip Eisenlohr
9bdd4d1d68
added <!skip> line to stop config parser from trying to interpret rest of geom description---huge speedup!!
2018-12-20 17:22:29 -05:00
Martin Diehl
5d7f930592
math.isclose does not exist for older versions
...
np.isclose does the same
2018-12-17 20:04:16 +01:00
Martin Diehl
e8f4dc4c9f
Merge branch 'orientationClass_with_negative_P' into development
2018-12-06 07:26:08 +01:00
Martin Diehl
ee7e4ee0d9
python3 has different encoding syntax
2018-12-06 06:27:07 +01:00
Philip Eisenlohr
a6d4c73de0
added list of map and introduced "quat" keyword in quaternion init
2018-12-05 10:20:05 -05:00
Philip Eisenlohr
c0f7ae2798
updated scripts that still used formerly valid object properties of quaternions
2018-12-05 09:07:29 -05:00
Philip Eisenlohr
1d7172c971
adopted more intutitive alternative of P=-1 from Rowenhorst_etal2015
2018-12-04 17:05:35 -05:00
Martin Diehl
7c1e2e256c
os.urandom returns byte, not string in python3
2018-11-24 10:07:47 +01:00
Martin Diehl
d53b01ab56
also works for python3
2018-11-18 08:04:52 +01:00
Martin Diehl
015e819d4c
python3 does not allow to compare tuple/list with int
2018-11-17 09:29:05 +01:00
Martin Diehl
82861e80bc
more python3 related changes
2018-11-17 08:46:58 +01:00
Martin Diehl
558745b548
explicitly require python3
...
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
Martin Diehl
50f880afd1
more scripts working with python3
2018-11-16 19:32:17 +01:00
Martin Diehl
9922f5f646
adjusted to python3
...
translate is more complicated now:
https://stackoverflow.com/questions/41708770
2018-11-16 12:23:45 +01:00
Martin Diehl
a3647cc587
more files with confirmed python3 compatibility
2018-11-16 09:03:12 +01:00
Martin Diehl
e9e3fef8d4
more python3 compatible scripts
2018-11-15 16:40:54 +01:00
Martin Diehl
a00d15b889
geom files are not labeled
2018-09-29 11:18:35 +02:00
Martin Diehl
8616a92309
unused module
2018-07-20 03:50:07 +02:00
Martin Diehl
24d1528e04
on the way to full python 3 compatibility
2018-07-20 03:31:46 +02:00
Martin Diehl
784ae28dbb
now working with python 3
2018-07-20 00:39:50 +02:00
Martin Diehl
9821654aae
iteritems does not exist in python3 anymore
...
items also works for python2 (might be slower though)
2018-07-19 16:16:10 +02:00
Philip Eisenlohr
1b12457fe6
vicinityOffset to specific triggering IDs instead of just any other ID
2018-03-30 11:48:02 -04:00
Philip Eisenlohr
0570a49ed5
fixed broken logic of restoring and preventing immutable microstructures
2018-03-27 16:53:49 -04:00
Philip Eisenlohr
2c3eae6bf0
fixed tests and bug for very small unit cube fractions when grid is also small
2018-03-07 18:59:27 -05:00
Philip Eisenlohr
32c34457c2
direct selection of valid seed coordinates within subfraction of unit cube instead of check and repeat
2018-03-07 17:45:22 -05:00
Philip Eisenlohr
f5177b6d2d
[skip ci] added option for non-periodic geometries
2018-02-20 10:20:35 -05:00
Martin Diehl
ba3a4e1254
indicating vectors with 1_, ..., n_ is standard now, "euler" also (more or less)
2018-02-05 17:34:08 +01:00
Martin Diehl
4dfb52c792
unfinished HDF5 should not be part of the next release
2017-11-21 10:23:50 +01:00
Franz Roters
eddc2a6acf
numpy actually not needed
2017-10-20 10:17:08 +02:00
Franz Roters
0c24f113c1
split overlong line
2017-10-20 10:14:15 +02:00
Franz Roters
26b8788c06
script to colocate 2D ang files into one §D file and optionally creat geometry and Paraview files
2017-10-20 09:36:57 +02:00
Philip Eisenlohr
ff072ae3c4
fixed bug (lost orgin info)
2017-08-23 15:14:22 -04:00
Philip Eisenlohr
9b6e092b5c
changed location where script appends itself to info trail
...
used to be sometimes at top, sometimes at bottom; now always after predecessor and above standard geom header
2017-08-23 14:09:33 -04:00
Philip Eisenlohr
f825e91bf1
script to straighten numbering in geom
2017-08-23 14:08:11 -04:00
Philip Eisenlohr
12fed7a38f
added option to use seed coordinates that are not normalized to a unit cube
2017-08-16 16:24:45 -04:00
Philip Eisenlohr
4eff7cfdd8
fixed wrong name for "pos" options destination
2017-08-15 16:11:21 -04:00
Philip Eisenlohr
1a423617c2
combined assignement of curvature exponent to deal with negative dimensions
2017-08-03 12:12:47 -04:00
Philip Eisenlohr
84a3885af8
negated option from "voxelspace" to "realspace".
...
introduced logarithmic sense of curvature exponents, additional polishing
2017-08-03 12:08:51 -04:00
Martin Diehl
e5af0630fe
gaussian filter (wrapper no ndimage)
2017-05-29 10:33:05 +02:00
Martin Diehl
691f338f5d
executable bit got lost
2017-05-19 09:33:58 +02:00
Franz Roters
ed85ce5bdb
changed argument handling in line with other scripts
...
now also works with stdin/out
2017-04-28 12:36:10 +02:00
Philip Eisenlohr
d35df1df49
Operate on MFD file to apply servo links, not client-server communication
...
Speed up by many orders of magnitude... 64 x 64 x 64 mesh less than a minute! Thanks Brendan!
2017-04-26 17:32:01 -04:00
Philip Eisenlohr
c34716a0da
modern form of croaking, added '*draw_automatic' as final output
2017-04-14 15:07:43 -04:00
Philip Eisenlohr
d1c2e2114d
switch auto drawing back on at end of pipeline
2017-04-13 19:00:19 -04:00
Martin Diehl
95a982e002
default type for muliple arguments (not extend) is tuple, not list
2017-04-13 12:54:26 +02:00
brendanvk
0d648b8de0
Change script to use resolution-independent coords
...
- Use the --voxelspace flag to get the old behavior
2017-03-07 20:37:30 -05:00
Martin Diehl
de57d9514e
removed code doubling and unused variables
2017-03-05 17:50:17 +01:00
brendanvk
f010aa97d9
Fix non-cube geometry structure, reduce memory
2017-02-24 22:30:04 -05:00
Brendan Vande Kieft
e5e6bed5de
Improve performance and generalize primitive shape
...
- Behavior is mostly unchanged, but the primitive may be shifted by a voxel when compared to the previous version, which had rounding issues near the edge of the primitive.
- exponent flag specifies the exponents that satisfy the equation x^e1 + y^e2 + z^e3 < 1. (1,1,1) gives an octahedron, (2,2,2) a sphere, and large values (1e10, 1e10, 1e10) gives a hexahedral box for any reasonable resolution. Mixing the two can produce a cylinder, (1e10, 2, 2) gives one with rotational symmetry about the x-axis.
2017-02-24 00:42:28 -05:00
Martin Diehl
a9d72c54b6
was not python3 conforming
2017-02-04 01:07:24 +01:00
Philip Eisenlohr
49eb7aa1be
fixed nasty ABS that caused wrong packing for 1,2,1,1,1,... and the like
2016-12-25 12:39:49 -05:00
Philip Eisenlohr
3628deb30e
changed option name from "no-config" to more common "without-config"
2016-12-23 17:46:16 -05:00
Philip Eisenlohr
d67be0e3f3
reduced memory footprint (substantially) by switching to 32bit precision
2016-12-08 23:36:19 -05:00
Philip Eisenlohr
c8f321356d
prefill immutable indices with closest mutable one
...
Retain only orginially immutable locations, not those where immutability bled into.
Changed threshold for change from 0.5 to 0.95 of max diffusedEnergy.
2016-12-08 09:47:20 -05:00
Philip Eisenlohr
9bb4f89e78
removed leftover debug output
2016-12-06 21:36:45 -05:00
Philip Eisenlohr
a2db7e9ba1
added option to suppress writing of material.config part in header
2016-12-06 21:36:25 -05:00
Philip Eisenlohr
cb95f3b244
fixed systematic drift of grain structure along -[1,1,1]
...
correction of periodic Gauss kernel extension, inclusion of ndimage.gaussian_filter alternative (same runtime as FFT), proper output handling of grids <3D
2016-11-30 09:39:13 -05:00
Philip Eisenlohr
40de6910b8
added --float option to translate real-valued grid data
2016-11-29 23:59:42 -05:00
Martin Diehl
a04968d43f
Merge branch 'development' into negativeRange
2016-11-01 17:20:56 +01:00
Martin Diehl
8593fb3ed7
unifying scripts
2016-10-31 22:11:16 +01:00
Philip Eisenlohr
4acfc73fa1
Merge branch 'Python3' into development
2016-10-31 11:28:40 -04:00
Philip Eisenlohr
94fcc9ad24
fixed language and syntax
2016-10-31 10:40:58 -04:00
Martin Diehl
8eb93a3274
python scripts now pack "a a-1 a-2 ... a-n" to "a to a-n"
2016-10-29 10:49:40 +02:00
Martin Diehl
aa3dc56949
fixed handling of last line (bug fix for second but last commit)
2016-10-29 10:30:42 +02:00
Martin Diehl
7e6e2e1c84
not using reserverd keyword "type"
2016-10-29 10:28:34 +02:00
Martin Diehl
1a56ad7a72
no logic change yet
2016-10-29 10:21:00 +02:00