Philip Eisenlohr
32c4a20a46
clean up, added --debug to base class, renamed testPossible to feasible
2016-09-01 15:37:49 -04:00
Philip Eisenlohr
f9c3d335fc
two new methods to convey deemphasis and deletion
2016-08-25 11:59:04 -04:00
Martin Diehl
c2b1499d84
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-08-16 12:46:03 +02:00
Philip Eisenlohr
6bdce9b332
fixed error for completely empty label list in read_array
2016-08-11 14:22:07 -04:00
Martin Diehl
0219a5f0e3
regex match
2016-08-01 17:01:13 +02:00
Philip Eisenlohr
0056f05b9d
all functions using angles now feature logical "degrees"
2016-07-31 19:33:26 -04:00
Martin Diehl
b02bbc77d8
correctly handling whitespace
2016-07-31 15:20:44 +02:00
Philip Eisenlohr
bb5070b52f
util.report without mandatory arguments
...
reporting can now omit either "who" or "what". cleaner output in case of no "who"...
2016-07-18 10:20:39 -04:00
Martin Diehl
9441ee7326
removed obsolete root relation
2016-07-16 09:36:15 +02:00
Martin Diehl
7f67ff05fd
used in both functions
2016-07-15 16:53:57 +02:00
Martin Diehl
0b145826a6
unicode docstring does not work for abaqus, but if using ö pyflakes wants to have a unicode docstring
2016-07-15 16:51:49 +02:00
Martin Diehl
ade6db3f9c
uses version string from CONFIG file
2016-07-14 16:12:05 +02:00
Martin Diehl
787a8da1c3
removed remainders of Corientation compilation
2016-07-14 16:10:59 +02:00
Martin Diehl
9e3f4b1ec4
unicode string caused trouble with Abaqus' IronPython
2016-07-14 16:09:04 +02:00
Martin Diehl
3314e5f051
updated symlinking, removed unused "rootRelation"
2016-07-14 15:11:49 +02:00
Martin Diehl
83e1970f71
now working with tcsh
2016-07-14 12:24:55 +02:00
Martin Diehl
0fbb56a6ef
python env reads from $DAMASK_ROOT/CONFIG
2016-07-14 10:42:22 +02:00
Martin Diehl
be02300d38
print statement disturbs shell piping
2016-07-04 21:44:59 +02:00
Martin Diehl
4f683d1974
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-07-03 11:47:56 +02:00
Martin Diehl
759126b906
compatible to python3
2016-07-03 11:44:01 +02:00
Martin Diehl
af4307ea72
Merge branch 'NoCoreModule' into development
2016-07-01 15:08:47 +02:00
Martin Diehl
fa13aa30b0
python 3 at least imports the damask module now
2016-07-01 15:03:25 +02:00
Martin Diehl
259ee072a6
Merge branch 'development' into NoCoreModule
2016-06-27 15:35:46 +02:00
Philip Eisenlohr
d669cfb024
removed obsolete importing of sys
2016-05-17 11:15:04 -04:00
Philip Eisenlohr
0c1657693f
dirty (but working) fix to adopt table.labels now being table.tags: table.labels --> table.labels(raw = True)
2016-05-17 10:52:21 -04:00
Philip Eisenlohr
9103ee544b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-05-17 09:52:18 -04:00
Aritra Chakraborty
8d6c601a45
fixed python flake complaints.
2016-05-16 20:17:17 -04:00
Aritra Chakraborty
1c36380a8a
fixed typo...
2016-05-16 20:05:57 -04:00
Aritra Chakraborty
dc6260be58
changed "labels" property to "tags". added method to inquire about (abstract) labels, i.e. interpreting the tag list to distill underlying label "meaning".
2016-05-16 19:54:00 -04:00
Philip Eisenlohr
280076e7ef
removed (probably obsolete) warning about missing h5py module.
2016-05-11 10:04:01 -04:00
Martin Diehl
d3ee2c05b9
=removed remaining IDs
2016-05-11 11:43:21 +02:00
Martin Diehl
7f24fe15ed
removed svn ID from python files
2016-05-11 11:37:59 +02:00
Martin Diehl
a21e8cd863
usind explicitly python2 to run in environments with python 3 as default
2016-05-11 11:01:39 +02:00
Philip Eisenlohr
5d4d78b079
expanded functionality to treat (white space-containing) strings and empty ("") data.
2016-04-28 23:11:06 -04:00
Martin Diehl
7ce208019c
Merge branch 'development' into miscImprovements
2016-04-25 12:36:02 +02:00
Philip Eisenlohr
ea24becdd4
added "report_geom" shortcut to croak geometry info
2016-04-24 11:20:55 -05:00
Philip Eisenlohr
45e237058b
fixed malfunctioning table.label_indexrange(listOfLabels). can now be used as numpy slice.
2016-04-24 10:07:37 -05:00
Philip Eisenlohr
54dec3ea2a
remove CR and LF from labels and info lines. Can happen if multiline shell input is parsed...
2016-04-20 15:46:39 -04:00
Martin Diehl
72639d174b
fortran code was translated by philip
2016-04-15 00:25:12 +02:00
Martin Diehl
0632dc1308
pyflakes complained
2016-04-15 00:22:41 +02:00
Martin Diehl
573d10f1e1
Merge branch 'development' into NoCoreModule
2016-04-15 00:05:38 +02:00
Martin Diehl
82063494fd
adopted to new json format of paraview
...
introduced "standard" colormaps for stress, strain, and orientation
file is now implicit the first argument without key (in line with other scripts)
2016-04-11 19:47:07 +02:00
Philip Eisenlohr
da29b1a361
removed line continuation characters (not needed within parentheses)
2016-04-05 13:29:36 -04:00
Philip Eisenlohr
73640587d5
fixed buggy query-by-label-index
2016-03-27 16:26:51 -04:00
Martin Diehl
3824b683bc
removed extra cython file, symlink to standard orientation instead
2016-03-24 15:06:04 +01:00
Martin Diehl
c73382e51f
further cleaning
2016-03-24 14:36:24 +01:00
Martin Diehl
d765282165
save fortran code
2016-03-24 14:20:18 +01:00
Martin Diehl
022b089fa7
cleaned core module related stuff
2016-03-24 11:49:23 +01:00
Martin Diehl
143a868dad
files resulting from compilation should not be part of the repository
2016-03-23 11:05:00 +01:00
Martin Diehl
fafedd5cd6
Merge branch 'LargeFiles' into development
2016-03-22 15:45:42 +01:00
Philip Eisenlohr
1b22b6e4ee
replaced variable interpolation into strings by "%" with .format() method
2016-03-21 10:26:30 -04:00
Philip Eisenlohr
8cd1f027b3
bug fixing.
2016-03-21 08:51:56 -04:00
Philip Eisenlohr
01a5343ca2
added another backgroundMessage animation. generally cleaned code a slight bit.
2016-03-20 20:58:10 -04:00
Philip Eisenlohr
a41cd3df40
added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid.
2016-03-20 16:46:35 -04:00
Zhuowen Zhao
d42f8d5fd4
added possibility to read real numbers as microstructure indices (not only integers)
2016-03-17 17:42:05 -04:00
Martin Diehl
7a4e9856c5
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-14 18:47:54 +01:00
Martin Diehl
fdd4ab483e
core.so is not part of the repo
2016-03-14 05:51:52 +01:00
Martin Diehl
2dbdf9a72f
all symbols need to be representable in unicode
2016-03-13 18:21:25 +01:00
Martin Diehl
efde4d363d
changed encoding
2016-03-07 09:56:14 +01:00
Martin Diehl
a4bbdd5ecb
further commenting, removing not used variables and code (marc2vtk)
2016-03-04 19:06:36 +01:00
Martin Diehl
d1e8f69857
added docstrings etc
2016-03-04 17:55:11 +01:00
Martin Diehl
24391b5398
checked with prospector, adopted mainly docstrings
2016-03-04 17:53:55 +01:00
Martin Diehl
9a405ef41b
using more stable way of handling unicode printing, cleaning unicode delete from output of execute
2016-03-04 17:23:38 +01:00
Martin Diehl
75480bc677
modified background threading because using it in postResults led to an dead lock.
...
rest modifications are just style
2016-03-04 15:22:01 +01:00
Martin Diehl
4d8aad36f1
first round of libraries
2016-03-01 23:02:47 +01:00
Martin Diehl
2a3e42a906
prevent import errors (e.g. when using Abaqus, having it's own python without scipy)
2016-02-02 23:24:44 +01:00
Martin Diehl
4fa2a58a19
needed to adopt to new test env (not perfect yet, but keeps things going)
2016-01-29 19:21:04 +01:00
Martin Diehl
f2c7eea161
git compatible way of version handling for Fortran and Python
2016-01-27 16:48:27 +00:00
Martin Diehl
81a8b2c4ed
color lib for output
2016-01-05 18:17:55 +00:00
Martin Diehl
120b2b8bd2
added test for hybridIA
2015-12-22 22:17:15 +00:00
Martin Diehl
0cfe35dfe6
consistently removing leading and trailing whitespace
2015-12-22 15:59:01 +00:00
Martin Diehl
bbb00b30e8
using numpy random
2015-12-17 21:26:59 +00:00
Martin Diehl
37aa559bd4
fixed missing structure type in material.config, small changes in the other code
2015-12-15 14:30:17 +00:00
Martin Diehl
97b96f13b2
updated installation for testing
2015-12-14 21:31:47 +00:00
Martin Diehl
1f08d0fbf6
verbose option for compareTables, new option to filter (now before and after normalizing)
2015-12-11 17:23:36 +00:00
Franz Roters
d196032bd3
these are also required
2015-12-08 14:27:24 +00:00
Martin Diehl
c3dc05c53a
continued work on test class and adopted some tests
2015-12-04 22:40:39 +00:00
Philip Eisenlohr
a18a1066e2
started to rework test class. Martin probably needs to check and continue improving on this.
2015-12-03 21:52:03 +00:00
Philip Eisenlohr
fc2d79e17b
added more animations…
2015-12-02 23:08:18 +00:00
Martin Diehl
0e76ef85c1
checking return code in util.exececute, cleaning makefile, deleted dummy docs
2015-12-02 13:21:17 +00:00
Martin Diehl
0ffcb7fdaf
cleaning
2015-12-01 16:37:20 +00:00
Martin Diehl
161e637ba6
not needed any more (at more usefull position in damask.util)
2015-11-30 16:30:35 +00:00
Philip Eisenlohr
38c536b6b7
improved unicode handling.
...
background message is now stoppable.
background message not “jumping” (multiplying) anymore.
2015-11-20 16:15:34 +00:00
Philip Eisenlohr
30a481f152
fixed forgotten symmetry property for average orientation.
2015-11-14 04:36:46 +00:00
Philip Eisenlohr
2b5cb08c4d
new method “head_putGeom” translates info-array into geom-description
2015-11-14 01:48:16 +00:00
Philip Eisenlohr
6211a9faad
symQuats-related functions can take optional argument to downselect return values.
...
“getAverageOrientations” —> “average” and takes optional multiplicities of orientations in list.
2015-11-14 01:46:44 +00:00
Martin Diehl
b700721905
comment on literature
2015-11-08 11:44:46 +00:00
Philip Eisenlohr
519484233c
can now deal with “empty” header line.
...
example:
# some comment
# further stuff
1_dim 2_dim
34 33
1 22
would work with “labeled”=True and stores the first two lines as “info”.
2015-11-03 21:14:45 +00:00
Martin Diehl
4ac9ef602e
still trying to find a stable solution on all machines
2015-10-29 21:51:57 +00:00
Aritra Chakraborty
9ea0898cd9
corrected the convention added yesterday; “proper” and ‘improper” was the wrong way around. “proper = True ” considers the bigger (2 adjacent) SST. In general, an improper rotation is implicitly assumed when projecting a pole into the (single) SST, hence this is termed “improper” now.
2015-10-23 20:16:01 +00:00
Philip Eisenlohr
15963391aa
inSST and inversePole now can consider the secondary SST related to improper rotations. Secondary SST is immediately neighboring (positively rotated around Z).
2015-10-22 21:15:15 +00:00
Martin Diehl
31579b3f88
tolerances caused problems, introduced new funtionality based on np.allclose
2015-10-22 05:59:11 +00:00
Franz Roters
b676ed0085
support for Marc 2010 was dropped a long time ago
2015-10-20 13:32:48 +00:00
Franz Roters
a087eedd54
added support for Marc2014.2 (so far installed on maws14 only)
2015-10-20 13:25:59 +00:00
Martin Diehl
e72ae63873
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
2015-10-14 21:35:56 +00:00
Philip Eisenlohr
7df8d95cd0
slightly cleaner way of dealing with disorientation calculation when axis not required to fall into SST.
2015-10-09 13:03:10 +00:00
Philip Eisenlohr
26f8f74310
undone np.unique of columns since this would introduce the unwanted side-effect of (messily) sorting columns. user expects to get sorting as provided through command line.
2015-10-09 12:55:30 +00:00
Martin Diehl
4c46d155ec
line continuation not needed
2015-10-09 10:24:17 +00:00
Martin Diehl
61090c955d
removed code doubling
2015-10-09 05:51:58 +00:00
Martin Diehl
851d2e1b2c
prevent to load columns more than once\n @Philip: OK?
2015-10-08 17:47:00 +00:00
Philip Eisenlohr
3b0dc374bb
now using ‘emph’ in reporting function instead of code doubling.
2015-10-07 01:07:56 +00:00
Philip Eisenlohr
801d57af4c
fixed buggy behavior caused by assigning string instead of single-item list to readBuffer.
2015-10-07 01:03:26 +00:00
Martin Diehl
6e05082133
might be needed in multicore env
2015-10-06 18:01:31 +00:00
Martin Diehl
95a8b54996
buggy behavior when read buffer contained string (len > 0, but no pop() method)
...
@Philip: please check if intended behavior
2015-10-06 16:19:37 +00:00
Philip Eisenlohr
e089e60202
transparently deal with one-dimensional array output
2015-09-30 18:44:54 +00:00
Philip Eisenlohr
b2243ae3c1
small polishing
2015-09-29 22:25:57 +00:00
Martin Diehl
948aa0c544
was missing in last commit
2015-09-24 10:01:15 +00:00
Philip Eisenlohr
2aa1073949
relocated “croak” and “report” functionality to here. needs to be altered in all scripts that still use the ASCIItable class for those…
2015-09-22 21:00:18 +00:00
Martin Diehl
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
Harsha Phukan
24bd3a6eee
added “non-strict” version to find disorientation, neglecting the search for axis falling into SST (has linear instead of quadratic effort).
2015-09-16 17:07:02 +00:00
Harsha Phukan
8a05584924
bg.message does not require symbol selection anymore—will pick random if nothing specified…
2015-09-15 19:02:00 +00:00
Martin Diehl
5f9fae1b75
simplified reporting using "emph"
2015-09-11 12:55:43 +00:00
Philip Eisenlohr
31bb27268c
removed dangerous property overload (.asQuaternion() —> .quaternion)
2015-09-09 22:37:18 +00:00
Tias Maiti
7495b33b68
label_dimension dropped indices >9 due to buggy string comparison…
2015-09-08 23:12:45 +00:00
Chen Zhang
ba418a5c97
reflect recent changes in orientation class
2015-09-03 16:50:49 +00:00
Tias Maiti
eb5ad7528f
fixed bug in asEulers() output in degrees
2015-08-29 23:22:32 +00:00
Martin Diehl
6848d83d13
behavior of IO_stringPos was unsafe in some situations, also took the chance to rename the variables used in its context to a more meaningful name.
...
functions in the core module are not used, including kdTree
2015-08-28 07:38:48 +00:00
Chen Zhang
f4145dd505
add numpy header location in the setup script.
2015-08-25 18:06:36 +00:00
Philip Eisenlohr
636eb8a087
multiple fixes and improvements.
...
1) asAngleAxis got “degrees” switch, fixed buggy output for negative angles, now angles are always non-negative.
2) removed rotateBys.
3) asEulers corrected for cases w==z or x==y.
4) added method symmetryQuats.
5) calculation of disorientation (finally) fixed, returns tuple (disorientation quaternion, index symA, index symB, boolean whether A—>B or B—>A).
2015-08-24 13:39:09 +00:00
Philip Eisenlohr
858fe7e897
prevent closing sys.stdin or sys.stdout
2015-08-24 00:40:52 +00:00
Philip Eisenlohr
7ceb7f7614
fixed problem when reading single label through data_readArray
2015-08-23 23:18:34 +00:00
Philip Eisenlohr
681b7f0831
added ‘emph’ method.
...
additional background message animations.
2015-08-22 17:02:49 +00:00
Philip Eisenlohr
6ba76c3832
introduced public line object holding currently read data line as string.
...
label_append now has option to overwrite (reset=True) labels that were read originally.
data_writeArray maintains full significant digit representation as default.
2015-08-20 19:38:06 +00:00
Martin Diehl
22c52fbd32
cleaned core module
2015-08-12 18:48:09 +00:00
Philip Eisenlohr
93dd9f5c09
bug fix regarding self.tmpext.
...
added check for access rights when overwriting original file.
2015-08-12 18:41:44 +00:00
Martin Diehl
a29240242b
standard name for numpy is np
2015-08-12 18:32:28 +00:00
Philip Eisenlohr
64515d7aca
simplified interface:
...
name == None: read from stdin
outname == None and not readonly mode: do in-place substitution of name (with transparent file renaming upon table.close)
2015-08-12 17:42:38 +00:00
Martin Diehl
f9348398ce
removed old file, added possibility to normalise euler angels to standard range, added svn properties
2015-08-12 15:15:33 +00:00
Martin Diehl
35863e0229
fixed averageDown and made it's test running
2015-08-12 13:43:05 +00:00
Martin Diehl
36caddcc24
adjusted to new ASCII table file handling
2015-08-12 12:51:47 +00:00
Chen Zhang
3991813595
fix syntax error regarding several static method
2015-08-10 21:08:00 +00:00
Philip Eisenlohr
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
Chen Zhang
dfe0991134
adding property alias for Orientation class to simplify syntax.
2015-08-04 20:38:06 +00:00
Chen Zhang
1ec3639cf1
use pure python implementation of orientation class as default
2015-08-02 17:49:38 +00:00
Chen Zhang
fbb7f9b11b
remove deprecated function from math.f90
2015-07-29 20:49:42 +00:00
Chen Zhang
9287d6f15f
make the interface for Symmetry class compatible with pure python version.
2015-07-29 19:39:30 +00:00
Chen Zhang
5f74f3e95e
add Cython version of orientation module to provide faster orientation calculation.
2015-07-29 19:23:06 +00:00
Chen Zhang
70606770d0
correct two typos in Quaternion class
2015-07-28 20:10:27 +00:00
Chen Zhang
bfedf037c6
add asAngleAxis() to Orientation class
2015-07-22 21:49:24 +00:00
Chen Zhang
08f4495721
changed readArray default behavior to reading always scalars when columns are referenced by number
2015-07-21 20:44:40 +00:00
Philip Eisenlohr
c46e639a38
fixed bug preventing first line to be read when using readArray without labels.
2015-07-09 03:40:15 +00:00
Yannick Naunheim
5fe65bfcc3
corrected OR models and set up simple test to check them
2015-06-29 16:02:56 +00:00
Martin Diehl
50bcfe6e0d
possibility to give fixed seed to random orientation
2015-06-26 06:32:25 +00:00
Martin Diehl
6aaf074651
bug fix
2015-06-25 16:16:01 +00:00
Martin Diehl
f10dfa311a
fixed ORs
2015-06-25 12:00:08 +00:00
Philip Eisenlohr
2d8af638b0
added optional keyword `degrees´ to q.asEulers().
...
added methods inFZ, equivalentQuaternions, and equivalentOrientations to Orientation class.
general polishing…
2015-06-21 12:05:17 +00:00
Philip Eisenlohr
16edd1693d
now only trying to close input and output tables.
...
corrected buggy behavior in case no columns found in data_readArray.
2015-06-19 06:08:09 +00:00
Philip Eisenlohr
83547ce29f
condensed multiple import statements into general one at module start.
2015-06-15 15:36:58 +00:00
Philip Eisenlohr
66ce1d0b33
speed up for inversePole method. Now only performing symmetry equivalence when asked for SST.
2015-06-13 11:51:10 +00:00
Philip Eisenlohr
0efbd4b11f
added Colormap.color(fraction) function to interpolate a color from the colormap.
...
cleaned Colormap.export by now relying on new interpolation function.
2015-06-13 11:46:32 +00:00