3f99d2bb65
further improved prefix handling
2012-08-27 09:39:57 +00:00
96ba5ecae4
moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
...
f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
975c3437ac
added possibility to use comma in functions, to prevent splitting substituted by ';'. Eg. round(4.021,1) becomes round(4.021;1) in command line call
2012-08-22 17:47:34 +00:00
4cfc302cdd
put prefix in front of the filename, not the directory name
2012-08-03 13:14:51 +00:00
3d7bc40520
added output of defaults for mesh, points, and box to help
2012-08-02 13:22:57 +00:00
a94b089aaa
removed old fortran brute force based tessellation
2012-07-26 09:07:24 +00:00
13caf2d389
made linear shape reconstruction working again, pretty similar results like corrected FFT reconstruction
2012-07-18 18:39:59 +00:00
95d292b286
2012-07-18 12:31:07 +00:00
117d06404d
cleaned up the script for setting up the postprocessing tools
2012-07-17 13:23:39 +00:00
b30584b8d7
added "()" to file.close command
2012-07-03 12:33:11 +00:00
783e1b50e2
condensed info parsing.
...
added info to report new origin of grid (based on --offset).
2012-06-26 18:08:50 +00:00
fd3d592333
added capability to respect "origin" information in header
2012-06-26 18:07:38 +00:00
cd04f990c5
added $id$ property and LF ending
2012-06-26 17:20:16 +00:00
9041c5de39
fixed help texts
...
killed full number range output option (use spectral_geomPack if needed)
2012-06-26 14:41:25 +00:00
2b5ff6a456
2 small corrections for header of geom file
2012-06-26 10:41:22 +00:00
9b76b47ef9
added missing extension causing invalid symlinking
2012-06-26 10:25:39 +00:00
baacbe3b11
added ifort as standard compiler, compilation is now done in DAMASK_ROOT
2012-06-25 09:06:09 +00:00
77ee33ec1f
script to changes the (three-dimensional) canvas of a spectral geometry description
2012-06-21 12:57:14 +00:00
06bfce0cd3
forgot to add the updated spectral_geomMultiply...
2012-06-20 17:06:28 +00:00
01a9290567
deleted old incarnation...
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new script follows established option parsing.
can rescale (increase only) the number of grid points in any dimension (with or without concurrent dimension scaling).
2012-06-20 16:00:48 +00:00
1105824562
new option to not rescale patch (set size = 0)
...
added "3 header" to file output
will now extrude for spectral grids
2012-06-20 15:58:43 +00:00
925759000c
added option to select data separation character from a choice of:
...
newline
tab (default)
space
2012-06-19 16:00:59 +00:00
376ec2cd94
add option to output double, triple, and quadruple scalars
2012-06-19 15:30:16 +00:00
c36a73c142
added include path for library files
2012-06-18 12:18:06 +00:00
a02dc204cc
added identifier for spectral solver when compiling post processing tools to setup/setup_processing.py
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test with intel compiler now uses ikml
2012-06-13 17:45:18 +00:00
dfc8606207
boundary conditions now consider patch dimension along pulling direction (used to be orthogonal to that..!)
2012-06-13 09:28:59 +00:00
98b790004a
Adding Second Piola-Kirchhoff data Coloumns (addPK2).
...
Integrating Stress-Strain table Data numerically (integrate.py).
2012-06-12 14:09:16 +00:00
1c427e8642
loop corrected
2012-05-14 07:58:21 +00:00
542768d712
bug fixed
2012-05-11 08:36:42 +00:00
c962452cda
python version of voronoi_tessellation.f90 generating geom file and material_config file (using kd_tree nearest neighbor search)
2012-05-10 16:42:07 +00:00
c752dd5474
regridding is now working, changed the subroutine into a function
...
changed order of arrays in nearest neighbor search to make it fortran fast
constitutive.f90 and homogenization.f90 write state size out during initialization
setup/setup_processing.py is using byterecl to be compatible with binary files written out by solver
2012-05-08 14:57:06 +00:00
34ef08c762
added unique naming of output file
2012-05-07 20:36:58 +00:00
a84838d3ba
removed erroneous print statements (leftover from debugging)
2012-05-07 19:28:21 +00:00
c9e17319ec
now with correct ID and LF line endings... ;-)
2012-05-07 19:11:46 +00:00
361b7ad398
new script to generate a twoD probability density map from ASCIItable data
2012-05-07 19:09:11 +00:00
c2954a2b33
now all heading labels squeeze out whitespace from their name.
2012-05-05 18:43:48 +00:00
b4775249e8
corrected standard check to make f2py working with gfortran
2012-05-03 17:12:36 +00:00
0cb983606f
spectral_geomPack is now formatting depending on necessary digits (via additional header information)
2012-05-02 13:44:12 +00:00
28e9b483ad
corrected wrong byte offset when reading thru 2^31-1-8 four-byte limit
2012-05-01 22:42:45 +00:00
b87b2160e7
fixed bug occurring for one item lines.
...
shortened logic here and there.
2012-04-25 13:53:56 +00:00
99f2b8603a
new script for reconstruction of elements from F/IP(spectral_buildElements.py), corrected spectral_randomSeeding.py, made post/postResults.py aware of additional header/footer for file positions larger than 2**31-1
2012-04-24 15:09:20 +00:00
f74b16051b
autodetection of line length for geomPack, updated description for both files
2012-04-24 11:31:18 +00:00
14356bf35e
new pre processing script for interpretation of "copies of" and "to" in geom files
2012-04-23 12:46:38 +00:00
335df4346f
deleted accidentally checked in file
2012-04-19 11:52:01 +00:00
31753be16f
updated setup/setup_processing.py with new files
...
added data_readLine(LINE) and data_skipLines(LINES) for ascii table
2012-04-18 11:42:57 +00:00
17f644b261
new scripts to add deformed configuration to ASCII table and for generation of layered 2D geometries (EBSD)
...
addCompatibilityMismatch.py is now using functions from ASCII table library
2012-04-18 09:58:59 +00:00
997933e495
corrected setup for new names of files
2012-04-16 15:01:29 +00:00
f20cecd421
integrated subroutine for regridding into mesh.f90 and made it available for python
2012-04-10 15:15:46 +00:00
d638c563af
reworked python - fortran interfacing
2012-04-10 13:30:34 +00:00
a3b37356be
added svn flags
2012-03-31 12:42:49 +00:00
c29ae95af7
new version of AL spectral solver (seems to work, but still experimental)
...
new concept of DAMASK for Python: Now using also IO.f90, debug.f90 etc. instead of mimicing their necessary function. This needs DAMASK_python.f90 and DAMASK_python_interface.f90 (At the moment more or less copies of respective spectral files).
polished and renamed the scripts for converging ang files
renamed voronoi_randomSeeding.py to spectral_randomSeeding.py
2012-03-29 19:54:31 +00:00
30d38436c7
switched voronoi seeding to python
2012-03-29 16:41:23 +00:00
4a6cdcc2e2
moved and renamed tools for generating geom file from ang files. using python instead of c++ for hex2cub conversion
2012-03-27 17:47:39 +00:00
3816adac27
removed batch processing (easier done on command line) and changed interactive question for filename to cmd argument
2012-03-21 17:58:11 +00:00
33ab391c14
added total increment column
2012-03-14 15:05:49 +00:00
ac5b6233e6
initialize lastIncrement to 1
2012-03-14 14:59:20 +00:00
d2051e54a5
PBC meshing can work on 2D models
2012-03-14 13:40:22 +00:00
95a2ed3443
added ability to add "damask option" to input file
2012-03-13 14:08:09 +00:00
9b17015b5a
added option for nodal quantity output (uses "linear" translation).
...
improved stability when requesting non-existing increments.
2012-03-05 15:22:10 +00:00
dc7234fd02
new option "--suffix" adds a suffix to the filename
2012-02-28 14:24:45 +00:00
10e93244c1
writing info to stdout instead of stderr
2012-02-28 13:21:59 +00:00
fc40291f38
script to add a suffix to specified ASCIItable labels
2012-02-24 08:53:19 +00:00
89176ae7f1
added "deleteInfo" to list of symLinks
2012-02-23 13:56:50 +00:00
53d7076d05
remove the info part from ASCIItables
2012-02-23 13:53:50 +00:00
a2b46c8a36
columns can be called by index
...
now pipe-aware...
2012-02-23 13:53:12 +00:00
d68a3d1869
added LF=UNIX to a bunch of files
2012-02-22 13:30:00 +00:00
ff4c281ed2
fixed whitelist/blacklist behavior (blacking out overrides whitelisting)
...
now broken pipes stop script's outputting.
2012-02-16 18:47:07 +00:00
a994b4bcc9
fixed problem when condition was empty
2012-02-16 18:00:40 +00:00
f2729255f8
changed name in install script, small corrections on regex
2012-02-16 15:15:43 +00:00
1bad5bf3c7
removed --count option. introduced 'internal' column #_row_#. adopted polished column head identification developed in filterTable. wiki updated.
2012-02-16 11:56:16 +00:00
9f45cb3745
new option: -c --count: count rows in ascii table and add column "row" with row number
2012-02-16 11:16:36 +00:00
edd5adafd0
now with ID and correct line endings...
2012-02-16 08:58:07 +00:00
37bd65ea34
script to filter an ASCIItable by condition. each row is evaluated against the condition, columns can be black- or white-listed (white wins)...
2012-02-16 08:36:35 +00:00
11d3c7a317
new spectra_parseLog searches through spectral log file and parses all possible output to an ascii table
2012-02-15 20:08:35 +00:00
b153a762cb
now using damask.core.math
2012-02-15 19:34:43 +00:00
bd32f1bf1a
adapting to current format of spectral out file
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now using regular expressions to match "magic" lines
2012-02-15 12:07:00 +00:00
8671b8ed38
script to delete existing columns from ASCIItable
2012-02-14 12:04:37 +00:00
156ec4582a
polishing, adding _pInt etc. where applicable
...
post_results now handels zero increment different (like FEM, it is always there even if it is not counted)
2012-02-13 14:18:07 +00:00
3228cf563c
fixed bug when column was referenced multiple time in a formula.
...
changed column tagging character to '#' ('$' gave some trouble on the shell...)
2012-02-09 15:46:25 +00:00
a329a9b91d
added flags for ifort and gfortran to use preprocessor
2012-02-09 13:30:59 +00:00
0f7c74e02d
set ID flag and line endings
2012-02-09 13:06:22 +00:00
5a6cd1fc8f
slightly prettified handling of finite difference accuracy requesting
2012-02-08 12:01:38 +00:00
56ce779f57
generalized slip system idea of Christoph to field data of "special" dimension (i.e. not 3 or 9).
...
dropped "norm"-suffix from input names of norms.
ASCIItable output is now called "normType" with type being Abs, Frobenius, or Max...
2012-02-08 12:00:31 +00:00
282e4a0360
scripts now figure out dimension and resolution on their own...
2012-02-08 11:18:15 +00:00
9c35e4e148
small polishing of help output.
2012-02-08 09:12:08 +00:00
51e8981ba3
not specifying the location of python executable directly, but rather getting it from $path, otherwise the scripts won't work on every machine
2012-02-07 13:09:10 +00:00
2f07faa0e2
norm capable of using different p-norms (abs norm, frobenius norm, and max norm). also able to handle "slipsystem" outputs (use option -s). number of slip systems can be set by option -i, if not 12 is default.
2012-02-07 13:02:56 +00:00
bffc22fbe1
major restructuring. packing stencil can be shifted to allow for element or nodal value averaging.
2012-02-02 17:12:48 +00:00
9b679c3c0b
switched to damask include instead of outdated damask_tools
2012-01-31 13:08:25 +00:00
27a976c04f
changed to new structure (using damask module)
2012-01-26 12:46:38 +00:00
becb863110
added test for gfortran and gfortran vs intel, renamed intel test to new numbering scheme and changed to new div criterion
...
introduced "try" statement in lib/damask/test/test.py to avoid crash if a test variant fails
2012-01-25 15:14:31 +00:00
7869379d38
output directory (--dir) can now cope with absolute path...
2012-01-20 19:53:56 +00:00
076fef3323
now fully supports output of vector fields (needs POINT data for useful visualization!!)
2012-01-19 20:42:50 +00:00
b134ec7a39
adopted ASCIItable class and checked correctness of results.
2012-01-19 20:41:56 +00:00
acf7c86531
respect existing symbolic link to core.so (necessary since different workstation have different system setup..!)
2012-01-19 20:41:08 +00:00
ae6abedee7
set makefile line endings.
...
small output polish in patchFrom...
2012-01-16 16:06:41 +00:00
447e181f55
fixed rounding problems with nodal coordinates
2012-01-16 16:05:02 +00:00
7ed2c19d0f
switched importing from "msc_tools" to "damask"
...
patchFrom... now skips blank lines, has more commenting, treats (artificial) bi-crystal (somewhat) gracefully.
2012-01-16 09:32:36 +00:00
8584532205
corrected '-o <file>' syntax: now with space in between.
2012-01-12 13:46:35 +00:00
55639f3362
added log time scale capability for spectral results
2012-01-12 08:06:25 +00:00
6163896531
$ID$ was not active so far...
2012-01-11 20:18:47 +00:00
9abf5a110d
changed from old DAMASK (f2py) module to new integrated damask tools
2012-01-06 10:41:23 +00:00
159c8cad89
corrected directories for linking
2012-01-06 10:41:01 +00:00
8b572ff4c5
translating command line options for compiler name to actual name of executable
2012-01-06 10:00:22 +00:00
dd1e968908
setup_processing.py uses damask module but builds the core part of it, therefore made the use damask.core optional by setting a try statement in __init__.py and a "from damask import xxx"
2012-01-04 11:06:24 +00:00
fbe908ccd2
now uses damask.core.math package
2011-12-22 10:42:24 +00:00
35bd460e39
added "core" package capability to processing
...
(renamed former f2py modules)
reverted pathinfo...
2011-12-22 10:36:59 +00:00
f463c2da70
added addCurl.py, not sure if it works correctly. still in old (eq. to addDivergence.py) style
2011-12-21 17:25:31 +00:00
3706bcbc3e
fixed bug
2011-12-20 14:19:01 +00:00
8d5dcc97bd
added geomCrop to crop a box out of a geom file
2011-12-20 13:33:16 +00:00
1194deff54
corrected leftover mistake (items --> table.data)
2011-12-15 10:53:20 +00:00
fb7adf7b89
adopted use of general damask package
2011-12-15 08:53:18 +00:00
609175318e
added option for output of colormap palette also as float values 0.0-1.0
2011-12-08 10:02:48 +00:00
2ceb78c337
introduced new damask_tools method "relPath" and adopted it in setup_processing.py and setup_code.py
2011-12-06 18:38:03 +00:00
ea0fe7b406
corrected 3D visualize (math.f90 part was not working)
...
small polishing of voronoi_tessellation.f90
2011-12-06 17:46:33 +00:00
5ebeb96e85
made DAMASK to work with gfortran:
...
-removed to long lines
-restructured f2py modules and merged make_DAMASK2Python into setup processing
-setup_code.py now sets library path in makefile and asks for compile switches for spectral code
-substituted \ in format strings with $
restructured DAMASK_spectral:
-more logical output and structure of code
-better input for spectral debug parameters
2011-12-06 16:58:17 +00:00
9d3f7b8d3d
adopted ASCII_TABLE class
2011-12-04 09:57:13 +00:00
42c3074821
mini calculator for column-column arithmetic
2011-12-02 15:15:36 +00:00
148f57b86d
changed it to work with changes in last commit
2011-12-01 12:02:36 +00:00
ace6851389
moved all routines from postprocessingMath to math.90, renamed the module to DAMASK, changed scripts and interfaces accordingly.
...
polished math.f90 (mainly added _pInt/_pReal and intent(in/out))
curl_fft is still a dummy function
2011-12-01 12:01:13 +00:00
e98590d850
adopted ASCII_TABLE class
2011-11-24 17:10:50 +00:00
18a09d7cff
corrected handling of STDIN|STDOUT
...
adopted ASCII_TABLE class
2011-11-24 14:48:02 +00:00
267b8ac30c
started to add curl calculation to postprocessingMath.f90
...
restructured colormap calculation. Algorithm is working now, but input/output still has to be done
2011-11-23 20:08:48 +00:00
48f8d4ccb5
exchanged logic now using ASCII_TABLE class...
2011-11-23 14:54:53 +00:00
f685bbba0e
exchanged location of "graincount" in user block.
...
now matches wiki entry:
1. homogenization block
2. grain block
(grain count
sub-block[s] of crystallite and constitutive)
2011-11-23 09:09:00 +00:00
e8f5996a96
renamed MSC_TOOLS.library_paths to libraryPath, since only single string is returned
2011-11-23 08:25:52 +00:00
21fcd0357e
now subsumed into general postResults functionality
2011-11-22 19:43:37 +00:00
75e20dffb7
corrected version conflict
2011-11-17 21:36:56 +00:00
09799b5b58
compile test is now at least compiling. still comparison to reference results has to be done
2011-11-11 15:06:33 +00:00
5aacb6032c
removed outdated comments
2011-11-09 18:04:51 +00:00
44e5d25274
now aware of $DAMASK_BIN and guessing if environment missing
2011-11-09 17:51:00 +00:00
41b8232695
setup_shellrc now adds $DAMASK_ROOT/bin to the $PATH
...
in setup/setup_processing.py uncomment 3 lines to remove the links from your ~/bin
2011-11-09 16:20:52 +00:00
06176873e4
after a somewhat lengthy discussion with Philip about usability and developability and general file-naming philosophy we think that we found a compromise on the "to-dot-py or not-to-dot-py" issue:
...
symlinks in DAMASK_ROOT/bin do not carry the extension, but the source files do.
Hope that results in the maximum number of happy developers and users.
2011-11-09 15:37:45 +00:00
98513a4e0d
2011-11-07 18:27:33 +00:00
de96e99bca
corrected determination of restartRead from commandline (now done by FEsolving instead of DAMASK_spectral_interface)
...
recompiled fftw libraries with --enable-shared to make them work with f2py
added draft for compilation test of spectral solver
2011-11-07 18:25:10 +00:00
ba63d3231f
fixed string include
2011-11-04 10:27:41 +00:00
9e3d7d7d6c
made $DAMASK_ROOT definition optional
2011-11-03 13:51:54 +00:00
b9647b2584
moved parts into new "lib" folder
2011-11-03 13:21:11 +00:00
aba7937845
now uses msc_tools method to figure out Mentat path
2011-11-03 13:16:00 +00:00
edb8c0cd1e
no part of "lib/pathinfo"
2011-11-03 13:00:39 +00:00
b5e6b754fb
starting "lib" subfolder for shared goodies.
2011-11-03 12:19:26 +00:00
db12869c16
shifted back to main folder. small polish.
2011-11-03 12:18:07 +00:00
b847db969a
changed "texture" to more correct "structure"
2011-11-03 12:07:41 +00:00
4e8f36a133
remove $ID$ from first line (I am wondering how this could work...)
2011-11-02 18:49:53 +00:00
680ba9082f
removed deadlock when calling IO_warning(33)
...
polished IO_error and IO_warning
checked OpenMP critical statements in DAMASK_spectral.f90
corrected writing of headed in DAMASK_spectral.f90
2011-11-02 14:38:42 +00:00
447e69019c
Introduced environment variable DAMASK_ROOT.
...
It is set in the DAMASK root folder by running damask_env.sh
Much needed in the testing routines so far (try ./testing/run_tests.py)
damask_env.sh could also trigger other scripts to get to a working setup after fresh checkout. For example it could run
./processing/setup/setup_processing.py
./code/setup/setup_code.py
if it finds that we have a fresh checkout.
2011-10-27 17:55:42 +00:00
7642509a47
first working draft of automated code testing, run_tests.py assumes DAMASK is located under ~/DAMASK/
2011-10-24 16:24:15 +00:00
e7a60988a1
modified exit number extraction
2011-10-24 13:02:08 +00:00
93b2160c2f
extract exit number from MSC out-file. Other MSC utility functions can also go into MSC_TOOLS class.
2011-10-24 12:59:46 +00:00
414bacb096
deleted unused vars. changed linking library info/path
2011-10-20 12:47:57 +00:00
Martin Diehl