Commit Graph

1747 Commits

Author SHA1 Message Date
Martin Diehl b85ac11c49 implemented ideas from discussion with Philip
group matching unified and with wildcard support
time step handling should become more convenient (WIP)
add_norm can not compute abs of scalar, added function for that
general polishing here and there
2019-09-14 09:07:23 -07:00
Martin Diehl c13db4b3ca renaming
on_air/active are not clear. visible seems to be the most appropriate
name
2019-09-13 21:49:22 -07:00
Martin Diehl a6567e0cc6 safer to use functions
don't mess with attributes of the object, they might be renamed
2019-09-13 21:41:35 -07:00
Martin Diehl 002383afc2 solved problem with postprocessing
- to not 'try' with h5py library, it might have another 'try'. Check
explicitly for empty argument

also some polishing
2019-09-13 16:01:30 -07:00
Martin Diehl 52904a81dc taking prospector complaints serious 2019-09-13 06:49:25 -07:00
Martin Diehl a3c6f6682e using eigh should ensure orthogonal eigenvectors 2019-09-13 06:42:01 -07:00
Martin Diehl 890a6cf42f avoid floating point comparison and simply play it safe 2019-09-13 06:40:41 -07:00
Martin Diehl 0497b58629 use existing functionality 2019-09-13 06:38:22 -07:00
Martin Diehl cd6a4d1cfd that's all we need 2019-09-13 06:37:47 -07:00
Martin Diehl 66d8a3e601 stretch is symmetric (play it safe here) 2019-09-13 06:35:48 -07:00
Martin Diehl 79d2432c6c R not needed 2019-09-13 06:33:00 -07:00
Martin Diehl 49b3cd2145 transpose evuivalent for rot but faster 2019-09-13 06:32:05 -07:00
Martin Diehl 462bb07efd Merge branch 'development' into even-more-HDF5-postprocessing 2019-09-11 16:29:44 -07:00
Philip Eisenlohr 926217fcb6 added possibility to reduce rotation to specific fundamental zone, and to output 3-dim Rodrigues vector 2019-09-10 15:09:27 -04:00
Martin Diehl d446248d75 also ouptut materialpoint results if requested 2019-07-15 17:07:04 -07:00
Martin Diehl b6bb8a4650 simple strain calculation for DADF5
further enhancement requires to give optional arguments to
add_genericpontwise
2019-07-06 21:41:29 -07:00
Martin Diehl a8ed982706 [skip ci] better name 2019-06-15 07:31:30 +02:00
Martin Diehl eb8be13203 missing import 2019-06-14 17:27:00 +02:00
Martin Diehl 1cf9c59850 standardizing
import follows PEP style guide, encoding not needed for python3
2019-06-14 13:03:30 +02:00
Martin Diehl 4ff3efb1a5 to 'stack' tables 2019-06-13 23:14:40 +02:00
Philip Eisenlohr bffeaa980d restored Martin's logic, not clear why seemed to be broken with PE's former tests... 2019-06-03 14:43:23 -04:00
Philip Eisenlohr 8d52a3d52a polishing of geom_rescale; adopted modified testing reference 2019-06-03 14:15:23 -04:00
Philip Eisenlohr 2870fdb25b fixed buggy version 2019-06-03 13:39:45 -04:00
Philip Eisenlohr 89e4bc800c removed default size to adjust to changes in geom-class 2019-06-03 13:38:48 -04:00
Philip Eisenlohr 60031cc806 changed periodic option to reflect to better reflect what happens 2019-06-03 13:35:37 -04:00
Philip Eisenlohr 7ea417d585 rotated geometry maintains center of gravity 2019-06-03 13:30:14 -04:00
Martin Diehl 615ff4ed06 [skip ci] vectorized 2019-05-31 23:26:32 +02:00
Martin Diehl bf27505faa Merge branch 'development' into geometry-class 2019-05-31 16:21:50 +02:00
Martin Diehl 02671c5c03 bugfix
shoud now work for any possible combination of new and old grid and
offset
2019-05-31 15:58:47 +02:00
Martin Diehl 979145f023 vectorized 2019-05-31 10:27:26 +02:00
Martin Diehl 46f0ad052e direct support for vtk output
- geom_check can now handle multiple files
- microstructure index is stored as integer in vtk file
2019-05-30 15:35:45 +02:00
Martin Diehl 08052737cf if grid is an option, it is a tuple
tuples do not have the prod() function
2019-05-30 14:28:31 +02:00
Martin Diehl c2a5f37818 round to reasonable precision
without symmetry, there are 36000**3 = 46656000000000 orientations
2019-05-30 14:11:54 +02:00
Martin Diehl bf60cffab5 cleaning 2019-05-30 14:07:49 +02:00
Martin Diehl d0c7f8b934 texture is typically the more interesting information
therefore, but it to the top
2019-05-30 14:05:45 +02:00
Martin Diehl 8380071564 using geom class
- dropped the use of the material class as it does not allow to have
empty phase and crystallite. The material.config class needs a severe
refurbishing (no crystallite, use orderedDict instead of hand written
solution, drop of texture components). Probably best solution is to
postpone this until we have a yaml/json reader for Fortran.
2019-05-30 13:30:38 +02:00
Martin Diehl 7d07a3752f polishing 2019-05-30 13:30:18 +02:00
Martin Diehl 461611cde7 polishing 2019-05-30 11:26:47 +02:00
Martin Diehl 49c3903cc7 explicit loop for simpler code
- no invalid combintations any more (allow to move the original
microstructure out of the new canvas)
- handling of origin needs discussion. When we want to recover the old
behavior, the origin might be located outside of the new geometry
2019-05-30 11:26:07 +02:00
Martin Diehl e974bb9c43 similar structure for building blocks 2019-05-30 10:45:17 +02:00
Martin Diehl 510b55df50 several improvements
- more error checking
- order of points can be arbitrary also for microstructure input
- grouping of same orientation/phase combinations
2019-05-30 10:33:01 +02:00
Martin Diehl 931fa9d36a standardized and cleaned
-write to file if given
-type casting is done in the geom class
2019-05-30 10:20:07 +02:00
Martin Diehl 07276d511c modern python formatting
- 2 digits should be precise enough for euler angles
- no need to pad grain ID with leading zeros
2019-05-30 10:03:55 +02:00
Martin Diehl 73df615ff3 numpy meshgrid can do this now 2019-05-30 09:45:30 +02:00
Martin Diehl 4e0e5a2329 new python formatting style 2019-05-30 09:41:22 +02:00
Martin Diehl f30eda0267 no need to loop over files
will procude the same file over and over again
2019-05-30 09:32:37 +02:00
Philip Eisenlohr cdc8338347 full (not periodic) mirroring is geom_mirror default behavior 2019-05-29 20:22:29 -06:00
Philip Eisenlohr d79f0c6290 replace geom_canvas --blank with geom_fromScratch 2019-05-29 20:02:06 -06:00
Martin Diehl fd9801ba09 StringIO not needed 2019-05-29 19:44:38 +02:00
Martin Diehl d7e8a66746 polishing 2019-05-29 14:18:11 +02:00
Martin Diehl 16bd5294aa loop order as intented 2019-05-29 14:06:39 +02:00
Martin Diehl 78f30684f8 moderized
needs some polishing with respect to array orders
2019-05-29 09:40:56 +02:00
Martin Diehl 6836a2eae8 better readable 2019-05-29 08:04:01 +02:00
Martin Diehl dfc2b47abc better readable 2019-05-29 08:01:00 +02:00
Martin Diehl 8ee23b37b2 should not be part of the repo 2019-05-29 07:52:44 +02:00
Martin Diehl bb6f54963a save some memory (avoid copies if not needed) 2019-05-29 07:49:43 +02:00
Martin Diehl 9f68923038 restored old behavior
save some ressources by avoiding copies.
much slower than old version, better cast formula into meshgrid again
2019-05-29 07:38:11 +02:00
Martin Diehl 2eb964b1ea simplified
needs some manual checking and proper test
2019-05-28 23:49:11 +02:00
Martin Diehl 100a2031d3 [skip ci] no white space needed 2019-05-28 07:55:24 +02:00
Philip Eisenlohr 1f56ac6a4a streamlining and bugfixing of geom-class 2019-05-27 22:45:34 -06:00
Martin Diehl b69f0efbbc improved and simplified reporting 2019-05-27 22:00:26 +02:00
Vitesh Shah 5abcca50ee Merge branch 'more-HDF5-postprocessing-cleaned' into development 2019-05-27 12:17:12 +02:00
Martin Diehl 59c6c5cfe4 not needed anymore
essentially, (gauss) is an Euler angle triplet
2019-05-27 10:49:50 +02:00
Martin Diehl 6e06764e2d using (enhanced) central functionality 2019-05-27 08:38:02 +02:00
Martin Diehl d9ab87cfde crystallite will be removed soon, error handling is done by geom class 2019-05-27 08:35:24 +02:00
Martin Diehl 5cf63bbbc3 vtk 7 is out for more than 3 years 2019-05-27 08:34:36 +02:00
Martin Diehl b5cec797c0 cleaned 2019-05-26 23:03:31 +02:00
Martin Diehl c8dfba89e5 using class
still a very complex script
2019-05-26 22:49:05 +02:00
Martin Diehl 15d5a7ae28 don't access attributes directly 2019-05-26 22:08:14 +02:00
Martin Diehl f251cdb746 simplified 2019-05-26 22:07:50 +02:00
Martin Diehl af493cf9fd using class
needs more memory, but should be faster and is better readable
2019-05-26 21:32:08 +02:00
Martin Diehl 99da46fda8 polished 2019-05-26 20:36:41 +02:00
Martin Diehl 657a30c2f5 using new functionality 2019-05-26 18:51:27 +02:00
Martin Diehl feb2340935 self-reporting functionality for updating 2019-05-26 17:58:54 +02:00
Martin Diehl 34f7bbe2a0 'blank' option does not fit to flow of script
seeds_fromRandom -N 1 | geom_fromVoronoiTessellation -g 30 30 30 -s 1 1 1 > file.geom
or a few lines of python code give the same results
2019-05-26 13:06:22 +02:00
Martin Diehl e7b8ae08d0 polishing 2019-05-26 12:14:48 +02:00
Martin Diehl 974f67ffdc no frills 2019-05-26 12:06:51 +02:00
Martin Diehl be3513d1e0 polishing.
python imports follow PEP8
2019-05-26 09:49:56 +02:00
Martin Diehl a242382bed Merge branch 'geometry-class' of magit1.mpie.de:/damask/DAMASK into geometry-class 2019-05-26 09:19:29 +02:00
Philip Eisenlohr b13aa799c3 updated error message 2019-05-25 17:00:41 +02:00
Martin Diehl c89d344236 polishing 2019-05-25 13:51:05 +02:00
Martin Diehl 2b7d95f800 was accidently commited
gives different results due to interpolation from scipy
2019-05-25 12:09:09 +02:00
Martin Diehl c92969787a geom Class was updated 2019-05-25 11:56:06 +02:00
Martin Diehl 94f85b7f33 better readable 2019-05-25 10:45:58 +02:00
Martin Diehl fc1f65c34e works for dtype='float' 2019-05-25 10:36:46 +02:00
Martin Diehl 875643c363 same style 2019-05-25 10:24:45 +02:00
Martin Diehl 17eb0d1b20 using new class 2019-05-25 08:48:44 +02:00
Martin Diehl 4788fc6046 making use of new class
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
Martin Diehl 6c7f7c77da specifying non-existing or invalid files is an user error
this is the standard behavior for common unix tools, no need to make an
exception here
2019-05-25 08:24:32 +02:00
Martin Diehl cf374a04dc using new class 2019-05-25 08:21:00 +02:00
Martin Diehl 420abfa162 use new class 2019-05-24 22:34:27 +02:00
Philip Eisenlohr eb13fbc0ce streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max 2019-05-23 13:03:24 -04:00
Philip Eisenlohr e6cec6ecbe added option to reverse inside/outside of primitive body 2019-05-23 12:49:03 -04:00
Martin Diehl 339b86f784 bugfix + more verbose reporting 2019-05-16 11:44:03 +02:00
Martin Diehl 9f7fa5393a fix for scalar datasets 2019-05-16 09:31:13 +02:00
Martin Diehl 4599d1c34e does not match
node does not make sense, is weirdly numbered
2019-05-16 00:42:22 +02:00
Martin Diehl 3c0c0a2cd1 more flexible in selecting data 2019-05-16 00:27:06 +02:00
Franz Roters 998789528c Merge branch 'HDF5-out-homog-2' into 'development'
Hdf5 out homog 2

See merge request damask/DAMASK!78
2019-05-13 17:34:59 +02:00
Vitesh Shah feb1465803 Better to have actual increment num in output file 2019-05-08 17:31:18 +02:00
Martin Diehl 0cc2b1214d store requested data in ASCII file 2019-05-07 15:18:12 +02:00