53cb59fc47
use pytest instead of hand-written test class
2019-12-08 21:29:26 +01:00
6dfe24290c
Merge remote-tracking branch 'origin/development' into fix-orientation-relationship-2
2019-12-08 21:10:50 +01:00
b56864552f
testing forward <-> backward conversion
2019-12-08 21:05:34 +01:00
21431295fb
documenting
2019-12-08 20:20:13 +01:00
4e2e7d02f6
more sensible interface
2019-12-08 18:54:41 +01:00
7dc128ad12
polishing
2019-12-08 18:33:43 +01:00
828e82605e
ensure that data is correctly ordered
2019-12-08 18:13:45 +01:00
8d0c4310cf
improvements to grid generation
...
- handling of origin
- inverse functions: calculate grid,size,origin from regular coordinates
(cell or node). should replace corresponding functionality in util
2019-12-08 18:12:22 +01:00
9dc726ff53
polishing
2019-12-08 09:17:57 +01:00
ba69f5a631
polishing
2019-12-07 22:33:31 +01:00
96710a238d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into incs-no-leading-zero
2019-12-06 15:25:21 +01:00
4ddfd82304
better names
2019-12-05 18:32:21 +01:00
b1ff178109
Merge branch 'new-ASCII' into grid-filters
2019-12-05 18:06:56 +01:00
2648a67dcd
fixed sort_by to respect updated index (upon subsequent adding of new data)
2019-12-05 12:02:10 -05:00
3caf2c1296
condensing code
2019-12-05 09:05:50 -05:00
e7358746dc
taking care of prospector complaints
...
variables in 'eval' are hidden
2019-12-05 10:54:35 +01:00
274aaa7359
Merge branch 'new-ASCII' into grid-filters
2019-12-05 10:50:56 +01:00
1018b89296
nice to have..
2019-12-05 10:48:42 +01:00
f885748a58
variable was never used
2019-12-05 08:43:14 +01:00
1bf4946e67
invalid escape sequence
2019-12-05 08:37:39 +01:00
469d638afb
making table class feature complete
2019-12-05 06:57:09 +01:00
ee8e3386f4
shorter but still descriptive names
2019-12-05 06:16:29 +01:00
e7a67262f8
clear enough
2019-12-05 06:00:49 +01:00
2172e92e7e
test exotic input files
2019-12-05 05:57:47 +01:00
5fdf112f78
allow strings as data in ASCII file
2019-12-05 05:45:27 +01:00
1c83572589
more descriptive names
2019-12-05 05:11:58 +01:00
381c95bd1e
WIP: regrid functionality
2019-12-04 10:41:02 +01:00
07e9778798
one more test
2019-12-04 10:20:57 +01:00
bc41bbbec5
test coordinates-related functions
2019-12-04 09:23:08 +01:00
999321e588
Merge branch 'new-ASCII' into grid-filters
2019-12-04 07:45:01 +01:00
285075bb6b
ordered alphabetically
2019-12-04 06:15:32 +01:00
6902d3dd0a
repeated test
...
better sort alphabetically
2019-12-04 06:04:06 +01:00
6c31e22855
testing new style DADF5 file
2019-12-04 05:59:52 +01:00
32ebcea207
more tests
2019-12-04 05:49:43 +01:00
fecd4632b4
correct reporting of time
2019-12-04 05:49:17 +01:00
58a190ede8
Merge branch 'development' into incs-no-leading-zero
2019-12-04 05:19:38 +01:00
1110affec2
Merge branch 'new-ASCII' of magit1.mpie.de:/damask/DAMASK into new-ASCII
2019-12-04 05:10:01 +01:00
9ad8743396
using central functionality
2019-12-03 22:00:21 +01:00
e006e0ebec
functions for spatial coordinates on regular grids
2019-12-03 18:59:59 +01:00
3effea8e1d
also check operations that should NOT work
2019-12-03 17:03:03 +01:00
f5bbd3cf22
ensure functionality through unit testing
2019-12-03 16:39:54 +01:00
ff1778d149
Merge branch 'development' into new-ASCII
2019-12-03 15:56:49 +01:00
8f77843b0f
improved naming
...
- clearer variable names
- no '-' in attributes
- single source of truth
2019-11-30 09:01:37 +01:00
354c0123a1
backward compatibility
2019-11-30 08:40:59 +01:00
4185fcb4c3
adjust to new naming
2019-11-29 21:40:54 +01:00
dc3fc8f70c
do not clutter with leading zeros
2019-11-29 17:00:48 +01:00
76a1506893
small improvements
...
bugfix: writing correct labels (now consistent with readin)
error handling for inconsistent initialization
2019-11-28 20:18:54 +01:00
f2e722ed2e
polishing
2019-11-28 18:22:34 +01:00
3e65d44e07
centralized facilities for differential operations
...
note the need to reverse the grid shape in data from the ASCII table. If x is fastest,
z is slowest we require x to be the rightmost index
2019-11-28 15:46:22 +01:00
80b50f460e
cleaning
...
trying to get rid of strange re-ordering related to ASCII table data
layout
2019-11-28 10:09:22 +01:00
ca92400c2f
polishing
...
columns is the term used py pandas
2019-11-28 05:58:28 +01:00
b85049cb81
use brackets for line continuation with comments
2019-11-28 05:41:53 +01:00
98d5738fe6
Merge branch 'new-ASCII' into grid-filters
2019-11-28 05:12:36 +01:00
80002e6cfd
proper capitalization
2019-11-27 13:21:41 +01:00
cee095b58e
better use centralized code
2019-11-27 12:22:28 +01:00
7d4b982c73
make information on modifications mandatory
2019-11-27 12:08:23 +01:00
76c3577378
pandas.DataFrame needs to be a 2nd order array
2019-11-27 12:03:35 +01:00
39734ef53c
alter data
...
allows to access multiple columns ('f') and individual components
('1_f')
2019-11-27 10:56:29 +01:00
96714089b1
documented and tested handling of multi-dimensional data
...
more precise regex expressions. get_array can handle individual
components
2019-11-27 09:58:58 +01:00
882a11c5f8
get labels without shape information
2019-11-27 08:43:20 +01:00
2d96136a0d
more general constructor for Table
...
reading from file is just one case (now handled by static method).
General constructor needs data and header information as dictionary.
Works only with python 3.7 where dict keeps the insertion order. Earlier
python versions/other implementations might fail.
2019-11-26 22:53:46 +01:00
5661f60552
fname seems to be the common name
2019-11-26 21:36:24 +01:00
925a4f73d6
staticmethod better suited than class method
...
a classmethod changes the class, i.e. it assigns attributes and gives
them specific values.
a staticmethod does not alter the class
https://www.geeksforgeeks.org/class-method-vs-static-method-python
2019-11-26 20:32:54 +01:00
845cfc34ec
similar logic as in geom class
...
- filename is not part of the object
- transparent handling of files, strings, and path-like objects for file
IO
2019-11-26 14:26:25 +01:00
81abc43920
Merge branch 'development' into new-ASCII
2019-11-26 10:29:05 +01:00
23f5e0fa58
filters for operations on regular grids (in fourier space)
2019-11-26 10:25:39 +01:00
af78aaf2f1
testing rescale
2019-11-25 14:01:40 +01:00
e16024ddf9
Merge branch 'PythonImprovements' into pytest
2019-11-25 14:00:24 +01:00
476569390a
enable use of path objects, strings, and opened files
2019-11-25 13:47:14 +01:00
b757f02649
avoid repetitions
2019-11-25 12:04:57 +01:00
6d25506204
test for new pack functionality
2019-11-25 09:28:59 +01:00
969fa9bbc7
Merge branch 'PythonImprovements' into pytest
2019-11-25 09:15:06 +01:00
3e8518d861
following prospector guidelines
2019-11-24 19:30:00 +01:00
c9f9f7c681
pack causes trouble with tests ..
2019-11-24 19:02:19 +01:00
b2cdabd009
getting rid of shell scripts
2019-11-24 18:25:53 +01:00
816e86ae5f
phasing out python shell scripts
2019-11-24 15:13:26 +01:00
8186be6293
compress functionality should be part of the geom class
...
automated decision is base on heuristic whether compression is memory
efficient
2019-11-24 14:27:24 +01:00
02df55b9bd
bugfix
...
casting to plain array works only (and makes sense only) for a derived
type
2019-11-24 11:18:41 +01:00
6060abb375
cleaning
2019-11-24 09:10:47 +01:00
c9b1944493
handling of derived datatypes/structs
...
currently required for orientation
2019-11-24 08:50:27 +01:00
f30cbde99e
use first constituent as default
2019-11-24 08:04:40 +01:00
928a5c2e55
better use fixtures
2019-11-24 06:29:00 +01:00
2b392241f9
Merge branch 'PythonImprovements' into pytest
2019-11-23 19:25:22 +01:00
406ae29897
adopting rename in mechanics
2019-11-23 19:22:18 +01:00
3be1caa4ef
read_dataset has at least two dimensions
2019-11-23 19:21:41 +01:00
eb80a82e05
first idea how to test pointwise operations
2019-11-23 18:58:44 +01:00
e3f8195621
no not change line endings
2019-11-23 17:08:36 +01:00
4dc4442fae
small DADF5 file for testing
2019-11-23 16:15:08 +01:00
510e4752fd
using parametrized tests for better coverage
2019-11-23 14:03:47 +01:00
2810531c97
a test with reference results
2019-11-23 13:37:03 +01:00
834cd43b66
intention not clear
...
any ideas why __transforms__ was used?
2019-11-23 08:06:26 +01:00
ea4c4b6636
Merge branch 'PythonImprovements' into pytest
2019-11-22 22:10:20 +01:00
dfb95df689
migrating shell scripts to python class
2019-11-22 21:48:41 +01:00
c00af5c402
4 space indents are common practice
2019-11-22 20:52:36 +01:00
e5e3db8286
Merge branch 'PythonImprovements' into pytest
2019-11-22 15:42:27 +01:00
fad679a9a5
need to catch IOError
2019-11-22 15:19:20 +01:00
6e0b2a4fab
following prospector rules
2019-11-22 13:16:53 +01:00
dac63f7d92
subfolders not needed
2019-11-22 12:55:56 +01:00
77e410d7d1
follow prospector rules
2019-11-22 12:17:44 +01:00
a26a5738dd
polishing
2019-11-21 21:48:54 +01:00
e0f3fe3cc0
ported from hand written test class
2019-11-21 21:01:01 +01:00
a3376a35b7
testing mechanics module with pytest
2019-11-21 20:00:28 +01:00
cf88c1f907
correct syntax for integer comparison
2019-11-21 19:49:46 +01:00
a5ae82fe90
handle deprecation warning in python 3.8
2019-11-21 19:47:27 +01:00
7a7eea47b5
correct handling of arrays
...
all strains measures except for logarithmic had wrong off-diagonal
components
2019-11-21 19:46:05 +01:00
fb286af354
[skip sc] first draft
2019-10-31 10:47:40 +01:00
1c10459a5a
also use fast operation order
2019-10-30 21:09:17 +01:00
8a85123abc
4 space indent is python standard
2019-10-30 18:05:44 +01:00
b733bd3038
polar decomposition
2019-10-28 11:18:26 +01:00
fca288ae8a
performance improvement
...
this mapping is faster for large volumes
2019-10-25 14:47:36 +02:00
894b646283
corrected name of U,V; fixed Mises_strain factor from 3/2 to 2/3;
2019-10-23 15:03:24 +02:00
2d08eb68b1
bugfix for (3x3) version of Cauchy
2019-10-23 14:39:52 +02:00
5e7f9a223b
should be a passive rotation
2019-10-21 23:17:58 +02:00
9489c04ccb
less confusing
2019-10-21 23:02:31 +02:00
ecc51e34d3
rouding should affect color calculation
...
avoid NaN in math.power(x,0.5). math.power(-0.0,0.5) is ok
2019-10-21 22:44:12 +02:00
578cbf9bbf
bugfixes:
...
- vonMises calculation was wrong
- wrong type of data used in some add_XXX
2019-10-21 18:07:35 +02:00
78a2941436
avoid numerical issues
2019-10-21 16:59:49 +02:00
51ed4d68e6
more info
2019-10-20 13:13:48 +02:00
b593dfbfd9
better layout
2019-10-20 11:34:05 +02:00
f00f6952c0
selecting by increment is a common task
...
https://www.python.org/dev/peps/pep-0257/
The docstring is a phrase ending in a period. It prescribes the function or method's effect as
a command ("Do this", "Return that"), not as a description; e.g. don't write "Returns the pathname ...".
2019-10-20 11:00:10 +02:00
8f315836b0
easier to use if end time is included:
2019-10-20 10:42:45 +02:00
64731369e3
general definition for strain tensors
2019-10-19 16:05:53 +02:00
a665d5726d
polishing
2019-10-19 13:22:37 +02:00
b31de5d0f6
outsourcing tensor math to mechanics class
...
strain calculation is generalize to arbitrary order and simplified: No
need for svd, F^T F/F F^T does the job.
2019-10-19 12:54:16 +02:00
e51f6cee72
improved handling of string types for HDF5
...
- convert bytes to string when reading
- convert string to bytes when writing
2019-10-19 09:47:26 +02:00
5f0a48fae7
enhanced and documented
2019-10-19 08:51:51 +02:00
dc9aca5710
copy and paste error/invalid syntax
2019-10-18 20:57:36 +02:00
5858d03a6b
prospector complaints for stupid reasons
2019-10-18 20:55:39 +02:00
3336cfc3da
better have tensor functions available
...
allows in-memory evaluation of results
2019-10-18 20:50:03 +02:00
1a34a6f7b5
some useful tensor operations
2019-10-18 20:41:39 +02:00
47ba7d49b5
allow to use the same label twice in a function
2019-10-18 20:39:00 +02:00
de912c22b4
Merge branch 'development' into HDF5-spectral-displacements
2019-10-18 12:54:12 +02:00
91691744c6
Merge branch 'Marc-No-nonlocal' into 'development'
...
Marc no nonlocal
See merge request damask/DAMASK!98
2019-10-15 10:35:37 +02:00
708bbd3cb9
mesh/grid type transparent handling of coordinates
2019-10-12 16:15:04 +02:00
b208fa6565
takeover from Vitesh's work with small adoptions to current DADF5
2019-10-12 08:02:57 +02:00
0eef73935e
handling of derived types (orientation for the moment)
2019-10-11 08:35:21 +02:00
b8a1a5bb7d
v 0.2 is ok, not sure what the future brings so better check
2019-10-03 20:23:49 +02:00
0b29d08109
bump to DADF5 v0.3
...
contains displacements (for grid solver)
2019-10-03 19:02:17 +02:00
62fb4d2ea9
polishing
2019-10-01 14:30:09 -07:00
e96eb55edd
calculate different strain tensors
2019-09-30 14:28:58 -07:00
0e3b09adc1
negative eigenvalues are not possible
...
left/right Cauchy-Green Deformation Tensors are positive definit
https://de.wikipedia.org/wiki/Deformationsgradient
2019-09-30 14:12:15 -07:00
d95a795e3b
Merge branch 'MiscImprovements' into HDF5-spectral-displacements
2019-09-30 13:53:24 -07:00
0dd14a0652
correct reporting of version
2019-09-30 09:07:56 -07:00
457f9aa4e3
prospector found duplicated key
2019-09-30 08:53:53 -07:00
3206ee04bc
nodal displacements for grid solver
...
currently for non-MPI only
2019-09-27 20:38:02 -07:00
970d172160
correct message
2019-09-27 17:52:01 -07:00
ad83c8541d
same names as in python
2019-09-20 17:18:09 -07:00
fb61899c5f
seems that testing has Marc 2018.1 already
2019-09-20 20:54:30 +02:00
0b6620bfb7
Merge branch 'development' into MiscImprovements
...
F***ing commits to development!
2019-09-20 07:40:52 -07:00
4b2263bebe
conversion to float causes issues
...
test only current version of MSC.Marc
2019-09-20 03:21:53 +02:00
Martin Diehl