Commit Graph

181 Commits

Author SHA1 Message Date
Christoph Kords c7f987a3c1 "unitlength" parameter, which determines the physical size of the mesh, now available as a global mesh variable "mesh_unitlength" and written to the .mesh file during init.
Hence, it is available to the marc_deformedGeometry.py script via "mesh_init_postprocessing()" and "mesh_get_unitlength()", so no need for setting the scaling of the displacement vectors explicitly through an option; now displacements and nodal positions are always consistent
2013-05-07 13:06:29 +00:00
Martin Diehl 2a5dfbbfa0 removed #define Marc and substituted #ifdef Marc by #ifdef Marc4DAMASK which is defined by either the submit scripts or DAMASK_marcXXXX.f90 2013-04-30 09:49:30 +00:00
Christoph Kords cc72c0b17b added two new scripts:
"marc_extractData" is a simple variant of the "postResult" script that extracts all data from a macro *.t16 file (quadratic elements not yet supported) and writes it into an asciitable
"addDataToGeometry" searches for corresponding *.txt and *.vtk file in a given directory and adds the data from the *.txt file as SCALARS to the *.vtk file

first script needed an additional function in mesh that returns the corresponding node of a given ip in a specific element
2013-04-28 20:56:17 +00:00
Martin Diehl f18c6c5903 fixed bug causing no fluctuation in case of using with 3Dvisualize 2013-04-25 14:43:20 +00:00
Christoph Kords 650b7ef4ac added python script that produces vtk files with the (node based and ip based) deformed mesh from marc output file 2013-04-23 18:30:56 +00:00
Philip Eisenlohr 49ef6d7193 spectral_build_neighborhood now "hidden" in spectral compile part. (should not interfere with Marc/Abaqus compile anymore) 2013-04-22 09:01:58 +00:00
Christoph Kords ca99274a5d fluxes now always periodic for spectral solver, no need to explicitly state this in the geom file by use of "periodic" keyword 2013-04-22 08:32:51 +00:00
Christoph Kords 60fa91be9a calculation of cellnode positions now available in python via damask.core
first call damask.core.mesh.mesh_init_postprocessing(meshfilename) to initialize all necessary mesh variables
then damask.core.mesh.mesh_build_cellnodes(nodes) calculates the cellnode positions for a given list of node positions
the meshfile that is needed for the init is created automatically by mesh_init in DAMASK

!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
For marc simulations, run
 ./code/setup/setup_code.sh
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
2013-04-21 18:48:59 +00:00
Philip Eisenlohr e8f238a413 added specialized ipNeighborhood calculation for spectral solver case 2013-04-19 16:04:20 +00:00
Christoph Kords 12760026a4 last version still did not compile: IO_write_jobFile was not used by mesh_init 2013-04-19 13:02:37 +00:00
Christoph Kords 55bc741d1d last version did not compile: fixed small typo in mesh_init 2013-04-19 12:59:45 +00:00
Martin Diehl 4bc5e6717b fixed small bug when calculating mesh_Ncells 2013-04-19 12:41:06 +00:00
Christoph Kords 103c770ee6 fixed bug in cell generation: "FE_Ncellnodes" was not correct for elem type 17 and 136
too much memory allocated for mesh_cell
2013-04-18 17:56:14 +00:00
Martin Diehl 6b46a9c338 introduced output of initial geometry (vtk file) to mesh 2013-04-18 16:40:49 +00:00
Martin Diehl 8b2d9d8155 further improvements on implementing the plain mode 2013-04-16 17:07:27 +00:00
Christoph Kords 2a6ac44496 Major restructuring of mesh.f90 due to introduction of "cells". A cell is the volume (area in 2D elements) that surrounds an ip. It is described by up to 8 cell nodes and is used to calculate ip volume, area, and face normals. It can also be used to generate a mesh for e.g. paraview that contains ip output as cell centered data.
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
For marc simulations, run
 ./code/setup/setup_code.sh
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
2013-04-15 08:13:20 +00:00
Christoph Kords eaccf88e12 fixed bug that was introduced in the element type mapping in version 2305 2013-04-10 13:22:02 +00:00
Martin Diehl ddcc795461 allowed arbitrary grid (formerly know as resolution), i.e. any integer>1 in each dimension is possible.
removed square root correction for divergence (doesn't make sense)
fixed FFT debug of spectral solver
2013-04-10 10:19:16 +00:00
Christoph Kords 4338cd13bc - added element type 54 for macro (2d 8node 4ip reduced integration)
- automatically raising error for unknown element type inside mapping function
2013-04-10 09:38:40 +00:00
Christoph Kords 338e338c9a - fixed bug in volume calculation of 2d elements
- subroutine "mesh_build_ipVolumes" uses openmp parallelization
2013-04-10 08:24:53 +00:00
Christoph Kords d80d416c32 2d elements now have a volume corresponding to a thickness of 1; used to have zero volume
now also 2d elements can be used with nonlocal model
2013-04-09 18:07:30 +00:00
Martin Diehl 7b5a202e8c enabled alternative (and soon standard) keywords grid (resolution) and size (dimension).
removed errors for odd resolution
2013-04-08 14:22:32 +00:00
Martin Diehl 39a70e8a19 fixed bug in coordinate calculation when no average F was given (scaled wrong by ncp_elems**2)
other changes: just polishing + some more comments
2013-03-27 12:28:55 +00:00
Christoph Kords b6aecdac17 corrected debugging output of node twins 2013-03-27 10:25:37 +00:00
Franz Roters 02f092492e updated copyright header 2013-03-22 17:35:05 +00:00
Philip Eisenlohr 5b96c1d62a scaling of deformation gradient fluctuations now possible in x,y,z independently (give array). 2013-03-22 15:09:55 +00:00
Martin Diehl 59da88460e preparation for introduction of plain mode and restructuring of calc modes for CPFEM_general 2013-02-27 20:41:14 +00:00
Pratheek Shanthraj 07ff1f7c93 reporting current time for most module inits 2013-02-25 16:34:59 +00:00
Martin Diehl f0b4281400 removed unused variables, added pure statements, and declared external functions as external (using gfortrans debug option) 2013-02-11 10:43:45 +00:00
Martin Diehl a89efaa4a6 added missing bracket and substituted one more forall by do loop 2013-02-09 08:23:47 +00:00
Martin Diehl e644c6dbc5 improved reading in of values, now only warnings in case of problematic entries in material.config
divergence calculation sqrt scaling optionally introduced for basic scheme spectral solver
2013-02-08 15:55:53 +00:00
Franz Roters eacf6f1196 now also fixed the abaqus part 2013-02-07 10:45:10 +00:00
Franz Roters a036f1eb3a as some IO functions are no longer pure I changed some forall statements to ordinary do loops 2013-02-07 08:52:47 +00:00
Philip Eisenlohr 79e7deca55 introduced dedicated calculation of interface normals in IP neighborhood. (2D elements did not work so far..!)
fixed definitions of some (2D) interface planes to have all normals pointing outward.

removed "int, private :: i" defined for spectral compilation.
2013-02-05 13:27:37 +00:00
Martin Diehl c2495d0d4a changed misplaced private to public statement and renamed qsort to math_qsort 2013-02-01 07:26:21 +00:00
Martin Diehl e74b5da19a changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
Martin Diehl 6ce78cf806 gfortran now detects "call flush" statements, removed the last of them in mesh.f90 2013-01-23 21:50:01 +00:00
Martin Diehl c6a79d2b3d divergence_correction for basic solver variants has now 3 possibilities:
0: uncorrected, slope per sidelength (physical dimension) e = res/dim
1: corrected by sidelength, slope per unitlength          e = res/1
2: corrected such that distance between FPs               e = 1

alway regarding the medium length of x,y,z direction
2013-01-16 10:40:53 +00:00
Martin Diehl 19d86ca06a removed unnecsessary omp statements, removed one transpose in constitutitve 2013-01-08 11:09:20 +00:00
Martin Diehl b1f28ba5e7 made restart working for all solvers and added corresponding test
corrected error handling for FFT based function in case of odd numbers etc.
2012-12-14 17:30:22 +00:00
Franz Roters d4a59541ad removed write statements which were introduced for "debuging" 2012-11-19 15:12:11 +00:00
Philip Eisenlohr d9a98417ca switched element library to geomType based.
saves to copy same geometry description for different elements that are essentially similar regarding the IP number but differ in total node count.

introduced quadratic tetrahedron (Marc element 127 -- element 157 might also work, but did not perform well in fully elastic calc so far)
2012-11-15 22:45:20 +00:00
Martin Diehl 7e683ca7c3 removed coordinates from call to CPFEM_general and introduced direct storage of coordinates to mesh_ipCoordinates 2012-11-14 14:38:10 +00:00
Christoph Kords 3c53f3ec9a last version contains buggy mesh.f90; corrected typo in initialization 2012-11-09 07:52:44 +00:00
Christoph Kords 366ac28694 parallelized mesh_build_subNodeCoords and mesh_build_ipCoordinates 2012-11-09 07:47:14 +00:00
Martin Diehl 5214b93342 fixed bug when reading in geometry for spectral solver 2012-11-06 17:16:01 +00:00
Christoph Kords 5b6baa7c0d introduced distinction between ip coordinates and cell center coordinates; the former can be globally calculated by subroutine mesh_build_ipCoordinates, the latter locally by the function mesh_cellCenterCoordinates; renamed mesh_ipCenterOfGravity to mesh_ipCordinates 2012-11-06 14:37:13 +00:00
Christoph Kords 93cc466749 third entry in mesh_ipNeighborhood stores the neighbor_index that points from each neighbor back to the central ip; needed in nonlocal model 2012-10-24 14:03:02 +00:00
Christoph Kords b99a846503 new scaling feature in numerics (unitlength) did not scale the reference coordinates in the first place; now this is taken care of in mesh.f90, so scaling should work properly 2012-09-25 16:21:58 +00:00
Martin Diehl 96ba5ecae4 moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
Martin Diehl b96df9987e fixed reading/writing of integer arrays with function for real arrays 2012-08-16 14:55:23 +00:00
Krishna Komerla 08c7be7d15 adaptive regrid now working, updates F and F_lastInc based on mapping. 2012-08-10 15:48:27 +00:00
Martin Diehl 7e3a837640 moved calculation and output of geometry related data to mesh.f90, moved output of command line related information to DAMASK_spectral_interface.f90.
improved new solver structure (use with make SOLVER=NEW)
2012-08-06 12:43:05 +00:00
Martin Diehl ee1bde0cd7 enabling regridding more than once by introducing deallocation of arrays
added J2 test (stub from Taymour)
2012-07-31 15:37:49 +00:00
Martin Diehl 9c0a161ec0 in case of regridding, undeformed configuration is written out correctly. Restart improve by reading in additional data from converged step. 2012-07-24 12:21:41 +00:00
Philip Eisenlohr 4d09ef0648 changed variable name "debug_what" to "debug_level" 2012-07-05 09:54:50 +00:00
Martin Diehl bd462d12c6 fixed some bugs in the regridding routine 2012-06-20 18:33:20 +00:00
Martin Diehl d650972904 corrected some bugs concerning the regridding
prevented FEsolving from potentially write to a none existing file
started to introduce petsc into the make chain (nothing happens if PETSC_DIR is not set)
2012-06-20 12:49:46 +00:00
Martin Diehl 481268c8c2 fixed closing of file (unit 222) statement in FEsolving.f90
added missing keyword in mesh.f90 with ifndef Spectral statement (needed for Marc and Abaqus)
2012-06-19 14:33:24 +00:00
Krishna Komerla 06be437bc9 added minRes to regridding function and writing out of new geometry file
updated f2py wrapper to enable the use of init functions.
added 2 new error messages to io
2012-06-19 13:31:15 +00:00
Martin Diehl b2fd3e1180 introduced preprocessor identifiers Marc, Abaqus, and Spectral to enable conditional compilation. This allows deleted dummy functions that are used by one solver only.
Mainly affected modules are IO and mesh. Most of the changes in mesh result from reordering the functions when grouping them depending on their solver.
Further advantage is that FE solver do not need FFTW and kdtree2 anymore. The include files for these two libraries moved to DAMASKROO/lib now as I figured out how to use a include path in the Makefile.
Put all the files I got when testing compilation with abaqus in a folder which to become the abaqus compilation test.
2012-06-15 16:10:21 +00:00
Martin Diehl cec3357e8f corrected bug causing wrong element construction when using spectral solver. Also improved error messages for invalid resolution, dimension, and homogenization. 2012-05-21 09:06:02 +00:00
Krishna Komerla fbd075dc6e corrected automatic determination of resolution 2012-05-08 15:12:43 +00:00
Krishna Komerla c752dd5474 regridding is now working, changed the subroutine into a function
changed order of arrays in nearest neighbor search to make it fortran fast
constitutive.f90 and homogenization.f90 write state size out during initialization
setup/setup_processing.py is using byterecl to be compatible with binary files written out by solver
2012-05-08 14:57:06 +00:00
Krishna Komerla 4b18278781 reworked neares neigbor search subroutine, now also works for voronoi tesselation (general nn search in periodic cell) 2012-05-04 13:07:37 +00:00
Krishna Komerla 83e89fba3c improved regridding, especially interfacing to python (also for nearest neighbor search) 2012-04-24 17:02:27 +00:00
Martin Diehl d2c4874db3 several small corrections/polishing 2012-04-20 11:58:41 +00:00
Philip Eisenlohr dbc5a3a3ce subnodeparent check is now running only over actual number (not max) of parent nodes... 2012-04-17 09:19:44 +00:00
Martin Diehl 8c559cbdc9 fixed bug concerning file handling. 2012-04-11 18:46:36 +00:00
Martin Diehl 37fa6c2e14 merged code for python and spectral solver interfacing (shared most of it anyway).
put functionality for getting header information (dimension, homogenization, resolution) in functions in mesh.f90
2012-04-11 17:28:08 +00:00
Martin Diehl f2da887899 added missing ":" in mesh.f90, introduced absolute stress tolerance for spectral solver in numerics.config/numerics.f90 2012-04-11 12:57:25 +00:00
Krishna Komerla f20cecd421 integrated subroutine for regridding into mesh.f90 and made it available for python 2012-04-10 15:15:46 +00:00
Martin Diehl bd9667bd4b added new, flexible debugging scheme.
now all modules have their own debug specification.
compiles and runs, I hope nothing is broken
did a lot of polishing
2012-03-08 20:25:28 +00:00
Martin Diehl 87a83d82b7 changed assumed arrays (:) to properly defined ones (gfortran 4.7 was complaining) and remove use statements that are not needed 2012-02-21 15:39:36 +00:00
Martin Diehl 6c0f9d163b polishing: removed variable names like 'unit' and 'data' that are keywords of fortran and ensured that integer and real precision matches independent of machine standard.
removed cut_off parameter for damask_spectral
removed outpot of derived divergence measures and added RMS output in brackets
added comments and options to the makefile
2012-02-15 18:58:38 +00:00
Christoph Kords c786336af3 reordered (and partly redistributed) error message identifiers, deleted those which are not in use anymore.
all constitutive as well numerics now raises an error, if an unknown keyword is found in the respective config file
2012-02-13 17:41:27 +00:00
Martin Diehl 37ac7bf1b4 fixing inconsistencies in variable assignments 2012-02-10 11:56:05 +00:00
Christoph Kords bbf4f25898 renamed subroutine "mesh_marc_get_mpieOptions" to "mesh_get_damaskOptions" which is now also used for abaqus and spectral input files. The only available option so far is "periodic", which allows for periodic fluxes in the specified direction. Examples for usage (add the following lines to the respective input file, in case of spectral file this goes into the header):
- periodicity in x and z direction for marc:
   $damask periodic x z  
- periodicity in y direction for abaqus:
   **damask periodic y
- periodicity in x and y direction for spectral:
   periodic y x
2012-02-03 12:37:52 +00:00
Martin Diehl 800e291240 made code standard conform to Fortran 2008 (ignoring warning concerning comments beyond character 132). Basically, changing "x" format specifier to "Nx" ("1x") plus removing $ format specifier
added compiler switches for gfortran and ifort to check for standard conformity
old gnu compilers <4.4 are not longer supported because they don't provide the c binding for fftw
2012-01-31 19:18:55 +00:00
Martin Diehl 80583fefb5 added compilation_info.f90, to store compilation date,time and compiler info in each file
added #include statement at each init() routine
2012-01-31 14:54:49 +00:00
Christoph Kords 1032ff3d47 corrected definition of element base node, which was still flawed 2012-01-19 14:15:26 +00:00
Christoph Kords 6c2a61e489 corrected node coordinates and sorting for spectral method 2012-01-17 16:53:56 +00:00
Philip Eisenlohr f3bb2271c9 parsing of spectral geom file now accepts two-dimensional microstructure definition (plus range indications by 'x to y')
For instance:
1 2 3 4
5 6 7 8
9 10 11 12
...
2012-01-12 17:01:24 +00:00
Pratheek Shanthraj 2ea3c68d3f removed spectralPicturemode 2012-01-12 10:36:17 +00:00
Martin Diehl 680ba9082f removed deadlock when calling IO_warning(33)
polished IO_error and IO_warning
checked OpenMP critical statements in DAMASK_spectral.f90
corrected writing of headed in DAMASK_spectral.f90
2011-11-02 14:38:42 +00:00
Martin Diehl 6cf464b8a9 added 'spectralPictureMode' for reading in geometries with 1to1 mapping (e.g. EBSD pattern)
polishing
!incremental update, wait for commit of damask_spectral.f90 before checking out
2011-10-18 09:20:29 +00:00
Martin Diehl c35ea33f8e did a lot of polishing:
- removed unnecessary "return" before end of subroutine or function:
- changed undetermined array length (:) to (1:3)

To prevent problems with some code analysing tools:
- "3D oneliner loops" (with ";) only for "do" and "enddo" at the same time
- removed line continuation in OMP statements

made the makefile more flexible, removed heap-arrays switch
2011-09-13 15:54:06 +00:00
Christoph Kords 1ffb59a96a Calculation of current ip volumes now working. Crystallite output also reflects current grain volume, not reference volume. However, this is only available for Marc. Abaqus and spectral method still return the reference ip volume. The ip coordinates though are correctly updated for all solver types. 2011-08-10 16:37:17 +00:00
Philip Eisenlohr 06a4ac2565 fixed bug (segmentation fault) occurring for non-renumbered meshes: ipNeighborhood building did use FE IDs of twin nodes to address memory -- dangerous..! 2011-07-31 15:42:59 +00:00
Philip Eisenlohr a26d9c844b max size of crystallite result is now based on actual use within the mesh, not just picking the largest chunk from the material.config file... 2011-06-08 09:16:48 +00:00
Franz Roters 08d39342e4 reworked restarting for compatibility with abaqus (not yet fully working)
added new orientation feature for direct simulation:
  component type (random) asigns random orientation to an entire grain
2011-05-28 09:44:43 +00:00
Christoph Kords cac45cff96 ip coordinates are now updated every cycle; this is needed for the nonlocal internal stress fields
* Marc: node displacements are added to initial node coordinates (mesh_node0) to get current node positions (mesh_node), then ip coordinates are deduced
* Abaqus: ip coordinates are directly updated, no update of node coordinates!
* Spectral: for the moment no update of either ip or node coordinates! passing only dummy values with initial ip coordinates
2011-05-24 15:57:59 +00:00
Philip Eisenlohr fa98133f8e renamed interface from "mpie_interface" to "DAMASK_interface" 2011-05-11 17:01:03 +00:00
Philip Eisenlohr e5a2d829b0 new substructure with 'include' and 'config' directories
renaming of mpie_... to DAMASK for main usersubroutines

extension of element outputs from 5 to 8 digits (FFT!!!)
2011-05-11 16:38:45 +00:00
Franz Roters 7d84a0911e removed unused variables 2011-04-13 14:16:22 +00:00
Philip Eisenlohr e00d073ee3 added new 2D triangle elements
added some sourcecode commenting on internal database formats
corrected database to allow for ipVol and Area calc in 2D element cases
2011-04-06 08:35:37 +00:00
Franz Roters fcdb805225 added copyright text to all f90 (free) format files 2011-04-04 14:09:54 +00:00
Franz Roters 78d4e7d1dc mpie_cpfem_abaqus_std.f: first call is with kinc==1
mesh: allow multiple element sets with identical material
2011-03-23 16:20:12 +00:00
Christoph Kords 11138e3ee2 debugging output is now controlled by the "verbosity" parameter in the debug.config ranging from 0 (=almost no output) to 8 (=very detailed output)
0 : only version infos and all from "hypela2"/"umat"
1 : basic outputs from "CPFEM.f90", basic output from initialization routines, debug_info
2 : extensive outputs from "CPFEM.f90", extensive output from initialization routines
3 : basic outputs from "homogenization.f90"
4 : extensive outputs from "homogenization.f90"
5 : basic outputs from "crystallite.f90"
6 : extensive outputs from "crystallite.f90"
7 : basic outputs from the constitutive files 
8 : extensive outputs from the constitutive files

If verbosity is equal to zero, all counters in debug are not set during calculation (e.g. debug_StressLoopDistribution or debug_cumDotStateTicks). This might speed up parallel calculation, because all these need critical statements which extremely slow down parallel computation.
2011-03-21 10:31:17 +00:00
Christoph Kords 235266b169 openmp parallelization working again (at least for j2 and nonlocal constitutive model).
In order to keep it like that, please follow these simple rules:

DON'T use implicit array subscripts:
example:    real, dimension(3,3) :: A,B
                  A(:,2) = B(:,1)               <--- DON'T USE
                  A(1:3,2) = B(1:3,1)       <--- BETTER USE
In many cases the use of explicit array subscripts is inevitable for parallelization. Additionally, it is an easy means to  prevent memory leaks.

Enclose all write statements with the following:
!$OMP CRITICAL (write2out)
<your write statement>
!$OMP END CRITICAL (write2out)

Whenever you change something in the code and are not sure if it affects parallelization and leads to nonconforming behavior, please ask me and/or Franz to check this.
2011-03-17 10:46:17 +00:00