662a033d91
adapted to VTR geom files
2020-11-19 14:26:15 -05:00
a82b1adc14
Merge branch 'geom-load-ASCII-autoshift' of magit1.mpie.de:damask/DAMASK into geom-load-ASCII-autoshift
2020-11-19 12:24:09 -05:00
a4b5c2a537
shorter (but still self-explanatory) name
2020-11-19 15:20:44 +01:00
6e5cb60132
general tensor functionality
2020-11-19 15:16:01 +01:00
894a8de9f9
avoid name clash: as_Rodrigues_vector(vector = ...)
2020-11-19 14:31:14 +01:00
1c07152b96
sorted alphabetically
2020-11-19 14:05:59 +01:00
20d0732b2e
output unit to XDMF/vtk
2020-11-19 13:45:40 +01:00
af3a87b197
adjust to new auto-convert of 1-based geom files
2020-11-19 11:34:55 +01:00
5a5dd24687
removed aliases
2020-11-19 10:50:14 +01:00
903c185ee6
distinguish 'file not found' and 'invalid file'
2020-11-19 10:39:41 +01:00
c74e57f225
vtk error handling is not very helpful
2020-11-19 09:59:39 +01:00
96826dca73
Geom.load_ASCII now auto-shifts material indices
2020-11-19 09:40:19 +01:00
cb22c34db2
Geom.load_ASCII now auto-shifts material indices
2020-11-18 18:25:25 -05:00
b9b26cb2cc
output results for all constituents
2020-11-18 23:36:02 +01:00
5359e05fd3
always merge homogenization results
2020-11-18 23:17:12 +01:00
b885e38b3f
better readable
2020-11-18 22:12:23 +01:00
4bf802a28e
fixed documentation
2020-11-18 21:51:37 +01:00
843d7d8cac
Merge remote-tracking branch 'origin/development' into new_names_result
2020-11-18 21:37:52 +01:00
7352431143
vectorized
2020-11-18 20:10:04 +01:00
564ee6c96a
make uvw/hkl keyword-only arguments
...
avoid to prefer one over the other, since they are mutually exclusive
2020-11-18 16:45:53 +01:00
c60d9cde2a
merge 'mechanics' datasets
...
was like that for 'generic'. Needs detailed discussion in future
2020-11-18 15:52:55 +01:00
838a4ea592
[skip ci] fix for scalar values
2020-11-18 14:57:32 +01:00
870c0f7aca
removed aliases
...
required bump of DADF5 version
2020-11-18 14:53:11 +01:00
1c9028d0b1
simplified
2020-11-18 14:01:52 +01:00
89c748fdf1
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-18 13:55:05 +01:00
9a1e8e3c38
for the transition period
2020-11-18 13:28:53 +01:00
7291b95055
avoid pyflake for blank line 6 final
2020-11-18 12:29:10 +01:00
ee5822b721
avoid pyflake for blank line 5
2020-11-18 12:25:08 +01:00
4dbfad74cb
avoid pyflake for blank line 4
2020-11-18 12:24:17 +01:00
eda3837874
avoid pyflake for blank line 3
2020-11-18 12:21:09 +01:00
c681101136
avoid pyflake for blank line 2
2020-11-18 12:19:47 +01:00
33aa888fc7
avoid pyflake for blank line
2020-11-18 12:17:05 +01:00
e8f82d52cc
fix bug
2020-11-18 12:16:08 +01:00
be206d28b3
vectorized and more options
2020-11-18 12:14:12 +01:00
6bedd84759
self-explanatory names
2020-11-18 08:15:04 +01:00
cd8434b991
Merge remote-tracking branch 'origin/development' into python-improvements
2020-11-16 22:57:49 +01:00
c16ad845bc
Merge branch 'modernize-testing' into 'development'
...
Modernize testing
See merge request damask/DAMASK!280
2020-11-16 20:10:38 +01:00
a8fec922d5
show name in title
2020-11-16 17:25:13 +01:00
5a53f8743b
added to docstring
2020-11-16 10:44:33 -05:00
fa25a13264
fixed typo
2020-11-16 10:34:49 -05:00
de20e6b35d
code shortening; list_predefined() --> property "predefined"
2020-11-16 10:23:26 -05:00
5ebde607a2
einsum simplifications
2020-11-16 07:43:20 +01:00
9b9d83d93c
adding '_tensor' not needed
2020-11-16 01:15:39 +01:00
b893967b68
more systematic names and extended docstrings
2020-11-16 01:02:36 +01:00
6f81f5278d
separating general tensor math from mechanics operations
2020-11-16 00:13:34 +01:00
b3955573f6
using new tests
2020-11-15 22:39:47 +01:00
fd8743af5e
clearly distinguish seeds for tessellation and seeds for RNG
2020-11-15 13:49:17 +01:00
1541ac0add
more intuitive use
2020-11-15 12:38:54 +01:00
01d84c1477
testing also functions with graphical output
2020-11-15 11:49:52 +01:00
15af12bbb4
__ne__ is automatically set to !__eq__, __neq__ has no special meaning
2020-11-15 11:38:26 +01:00
51e5dda702
documentation + consistent string formatting
2020-11-15 10:54:20 +01:00
05c1007add
documentation improvments + acceptance of lists
...
example code at respective function, no space in 'or' variable names
(sphinx cannot handle this)
2020-11-15 10:31:01 +01:00
1eb9d494c7
not specific to Orientation class
2020-11-14 19:51:15 +01:00
149fce0a7e
increase test coverage
2020-11-14 19:42:52 +01:00
764aacf2a1
increasing test coverage
2020-11-14 17:54:47 +01:00
9eb4e2d0de
corrected handling of scalar/array arguments
...
+ more tests
+ corrected handling of numpy types
2020-11-14 17:26:38 +01:00
6529613726
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-14 15:10:52 +01:00
bacfe9f462
Merge branch 'fix-add_primitive-rotation' into 'development'
...
Avoids coordinate normalization _before_ rotation
See merge request damask/DAMASK!276
2020-11-13 14:11:54 +01:00
7b7b449877
testing fixed behavior
2020-11-13 06:50:57 +01:00
b3e8b85d25
normalizing coordinates _before_ rotation causes wrong primitive shape for non-cubic VEs
2020-11-12 18:34:29 -05:00
e15678e7a4
consistent handling of comments
2020-11-12 21:31:09 +01:00
8429a9d695
Merge remote-tracking branch 'origin/development' into modularize-mech
2020-11-11 07:04:23 +01:00
e90c20ccd6
Merge remote-tracking branch 'origin/geom-attributes-as-checked-properties' into development
2020-11-10 14:54:40 +01:00
5926f84851
WIP: refactoring Orientation=Symmetry+Rotation, Lattice=subclass of Sym, and Crystal=Lattice+Rotation
2020-11-09 21:20:56 +01:00
f105631015
redefined attributes material,size,origin,comments as properties; enhanced help/descriptions
2020-11-08 12:11:30 -05:00
287d56fc3d
consistent with new output names
2020-11-08 16:01:11 +01:00
7d4163e8a9
new format of material.yaml
2020-11-08 15:57:06 +01:00
03a68248b5
polishing
2020-11-06 13:25:00 +01:00
bbaeeb02da
Merge remote-tracking branch 'origin/misc-improvements' into h5py3
2020-11-06 13:19:47 +01:00
58a5d2666c
ensure correct Mises mode
2020-11-06 00:10:46 +01:00
4ccd068d3b
catch error in case of exisiting dataset
2020-11-05 23:00:56 +01:00
e649fb195f
update to use variable-length strings
2020-11-05 22:34:41 +01:00
30938a8278
correct order (brackets)
2020-11-05 21:38:00 +01:00
e26bb962c8
encode from str to bytes
2020-11-05 21:19:49 +01:00
68d384bbdd
bugfix: missing rename
2020-11-05 21:14:02 +01:00
a416f5ed5b
encode/decode for h5py3 not needed anymore
...
attribute values with variable-length strings will be interpreted as
str, not bytes
2020-11-05 16:13:29 +01:00
708c83dcf1
polishing
2020-11-05 07:15:59 +01:00
1fcf9cb721
don't compute silently the wrong von Mises kind
...
and allow the user to set it explicitly
2020-11-05 05:48:12 +01:00
7341b9830a
h5py v 3.x handles strings differently
2020-11-05 05:39:45 +01:00
01af348cd9
symmetric behavior load/save
...
default name reflects fact that material.yaml has a fixed name
2020-11-04 21:14:08 +01:00
ae959b9cc2
allow '.' in filenames
2020-11-04 18:08:04 +01:00
eaceb16203
added +1 to nanmax(material) as auto offset, now consistent with help and intention...
2020-11-03 17:43:57 -05:00
11f1f4f555
Merge branch 'modernize-testing' into development
2020-11-03 12:49:19 +01:00
2867050397
corrected shortened test logic
2020-11-02 18:31:37 -05:00
4fa44d388d
shortened test for monotonous increase of material index after sorting
2020-11-02 18:21:51 -05:00
4d4278e6dd
shortened tainted_neighborhood logic
2020-11-02 18:20:52 -05:00
cf958d32b4
Merge branch 'development' into vector-mechanics
2020-11-02 15:23:11 +01:00
be47c744d8
Merge branch 'development' into geom-sort
2020-11-02 12:26:31 +01:00
212ed62b19
pytest-based tests
...
removed unused functionality from deprecated python library modules
2020-11-02 12:07:16 +01:00
086b215d94
Merge branch 'test-new-dir' into development
2020-11-01 19:29:52 +01:00
cf18954db9
hint for future improvement
2020-11-01 19:20:52 +01:00
7059e6af6e
might not be in the last line
2020-11-01 18:34:52 +01:00
946da2379b
Merge remote-tracking branch 'origin/development' into modernize-testing
2020-11-01 10:06:52 +01:00
0a3598c338
Merge branch 'simplify-from_table' into development
2020-10-31 22:34:17 +01:00
0ebb9b611d
functionality to sort material id
...
convenient for layered materials
2020-10-31 20:46:21 +01:00
67f69fc8a5
data is consecutive
2020-10-31 17:23:58 +01:00
8224122bb9
more user friendly error handling
2020-10-31 13:16:25 +01:00
cf740a279e
combine constant with varying data
2020-10-31 09:56:43 +01:00
aecf2f539e
allow one homogenization
...
quite useless ...
2020-10-30 22:26:02 +01:00
c29e3650f3
don't squeeze into scalar
2020-10-30 22:24:27 +01:00
392803e47d
Merge remote-tracking branch 'origin/Marc_version_names' into development
2020-10-30 17:49:18 +01:00
46e5023f8b
Merge branch 'geom-improvements' into 'development'
...
Geom improvements
See merge request damask/DAMASK!264
2020-10-29 23:53:33 +01:00
b2289e80b2
simplified
2020-10-29 20:09:13 +01:00
0e499eedf3
correct rounding/clearer logic
2020-10-29 18:35:22 +01:00
4b700d367e
improved test
2020-10-29 17:59:44 +01:00
904c338b13
Reflect version underscore of installation files
2020-10-29 15:21:40 +01:00
999cf53c07
tests+fixes
2020-10-29 07:42:41 +01:00
3be0c462a8
explicit is better then implicit:
...
user should sort Table according to coordinates to create geometry. This
allows to have consistent behavior for from_table in Geom and
ConfigMaterial. We always ensure to keep the order
2020-10-29 07:25:16 +01:00
1b2cd6caf6
documentation was misleading
2020-10-28 21:53:46 +01:00
4ff99a7af4
more logical layout
2020-10-28 21:51:20 +01:00
855bf124d3
faster
...
https://stackoverflow.com/questions/16992713
2020-10-28 16:53:16 +01:00
21f095c9d8
Merge branch 'flexible-yaml-dump' into development
2020-10-28 16:19:17 +01:00
98e0ef3881
no loops
...
taken from https://stackoverflow.com/questions/3403973
2020-10-28 13:38:20 +01:00
d72343c865
keep order of unique values found in table
2020-10-28 11:56:28 +01:00
b38a498197
fast
2020-10-28 09:43:20 +01:00
5f03e8cf8f
0-based material indices
2020-10-28 09:31:55 +01:00
a5a127b787
new tests+ updated results
2020-10-27 16:46:08 +01:00
0804e6ee74
pythonic names
2020-10-27 13:50:47 +01:00
fa67a2ddf8
cell_coordinates is now a property
2020-10-27 13:35:14 +01:00
201a62d7c9
easier visualization if verts have a point-cell
2020-10-27 13:19:53 +01:00
4dd387d7f5
compatibility with old pyyaml + test for numpy
2020-10-27 06:39:58 +01:00
4159ae5f3d
keep order of keys
2020-10-26 21:44:38 +01:00
5834d95012
support for more types
...
- allow to directly use Config and its sublasses (cast to dict)
- convert numpy arrays
2020-10-26 21:38:24 +01:00
802e09be4f
python/damask/_geom.py exceeds line length limit (maximum line length 143 > 132)
2020-10-26 15:11:06 +01:00
2715e7b1a7
a bit more vectorized
2020-10-26 15:09:32 +01:00
1cbfa866d2
get rid of scalar variables
2020-10-23 16:23:36 +02:00
bd67296e8d
MARC_VERSION as MSCVERSION
2020-10-22 11:50:13 +02:00
7fa31a8a1b
solving imported but unused pyflake
2020-10-19 12:55:35 +02:00
4c22efc6ce
added show GB
2020-10-19 12:52:10 +02:00
bac7ace413
Merge remote-tracking branch 'origin/general-N_constituents' into vtr-only
2020-10-13 17:39:19 +02:00
86d91baf90
0-offset for geom
2020-10-10 10:36:15 +02:00
ffabeacbcb
removing functionality related to deprecated 'geom' format
2020-10-10 09:41:11 +02:00
00e2128e03
don't test ASCII functionality
...
vtr writing in Geom class is alwas serial, no need to wait
2020-10-10 09:02:25 +02:00
06d11a72da
better fitting name
...
load implies a more direct takeover.
2020-10-09 19:19:05 +02:00
57180952ec
typo
2020-10-09 19:05:05 +02:00
347c88cbb6
documented
2020-10-09 14:24:29 +02:00
75401dd280
generate configuration from table
2020-10-09 07:45:20 +02:00
0c68d293b6
N_constituents is now a general homog property
2020-10-09 07:44:05 +02:00
6ecaaa31c9
fairly general function to generate material configuration
2020-10-08 22:07:26 +02:00
952ad4f8fe
functionality for geom generation in python lib
2020-10-08 18:39:05 +02:00
3050471a2d
avoid circular inclusion
2020-10-08 18:05:03 +02:00
846cbdd2e4
Merge branch 'general-config' into 'development'
...
General config
See merge request damask/DAMASK!245
2020-10-08 00:48:16 +02:00
8d4adebea2
pyaml is now needed
2020-10-06 17:46:34 +02:00
3d49678e93
new names part 2
2020-10-02 17:51:33 +02:00
1b18cae46b
adjusted to new names
2020-10-02 17:49:52 +02:00
a04966582a
Merge remote-tracking branch 'origin/development' into general-config
2020-10-02 14:54:16 +02:00
58229b8851
relaxed test conditions
...
even threshold between -.5 and +.5 can result in a single material.
2020-10-02 13:26:11 +02:00
b29f22f513
documenting the actually available TMPS
2020-10-01 09:25:32 +02:00
a59e64a8e4
renamed TPMS and added more from additional references
2020-09-30 17:28:25 -04:00
33685bc493
allow user do control output style
...
(numerics.yaml looks strange otherwise)
2020-09-30 12:32:37 +02:00
5ad46ae021
completely tested
2020-09-30 09:05:23 +02:00
fdfcb16d15
not needed
2020-09-30 08:16:12 +02:00
bbed4f9c6e
nice formatting
...
will be checked by pre-receive hook
2020-09-30 08:15:02 +02:00
b383a4530e
better name, subclassing for easy extension to load
2020-09-30 07:53:25 +02:00
54e4943353
get rid of shell scripts
2020-09-30 07:11:33 +02:00
76f07e4c1e
tmp_path is preferred over tmpdir
2020-09-29 19:25:50 +02:00
350f5eb66a
improved from_ODF documentation
2020-09-29 12:55:00 -04:00
31f86c28f4
[skip ci] added parameter description; shortened hybrid_IA pre-loop logic
2020-09-29 11:15:10 -04:00
8d204ea445
[skip ci] small simplification
2020-09-28 16:17:43 +02:00
d2cfcdaca0
reference Data for ODF sampling (hybridIA) + skeleton of a test
2020-09-28 16:14:27 +02:00
95b85626d8
general hybridIA functionality
2020-09-28 07:40:43 +02:00
8ec1014134
Merge remote-tracking branch 'origin/development' into cleaning
2020-09-27 18:11:43 +02:00
e8e1960391
Consistency for docstrings
2020-09-26 18:02:25 +02:00
d0028b2eea
Merge branch 'development' into fix-docstrings-for-sphinx
2020-09-26 17:56:42 +02:00
9e3506b8ef
thorougly testing seeding functionality
2020-09-25 07:41:58 +02:00
e58cc4bfa0
removed substitute call for direct mapping; added seed from averaging of material ID cloud
2020-09-24 22:06:43 -04:00
e8454c40c7
more tests
2020-09-24 22:59:31 +02:00
4960cf43d4
documented and tested
2020-09-24 21:43:04 +02:00
e5b414419a
Poisson disc for periodic situation
2020-09-24 21:26:16 +02:00
ec23ab8b61
basic test for seeding
2020-09-24 21:06:26 +02:00
b5ea04424b
Merge remote-tracking branch 'origin/development' into seeds-module
2020-09-24 20:58:53 +02:00
8c8db5b99f
switched "Geom.materials" to "Geom.material"
2020-09-23 17:27:15 -04:00
b995f34834
Merge branch 'development' into geom-fully-out-of-place
2020-09-23 22:50:20 +02:00
8c83566b71
suppress warning
...
we already handle the invalid FPE
2020-09-23 21:10:39 +02:00
9bce1ddc29
simplified
2020-09-23 20:48:34 +02:00
3612b17295
corrected Sphinx warnings
2020-09-23 16:21:20 +02:00
c85d27baec
functionality for seed creation
2020-09-23 09:45:36 +02:00
ae579d8baa
allow to specify seed IDs explicitly
2020-09-23 09:28:00 +02:00
5a64dd30e1
Merge branch 'development' into modernize-testing
2020-09-23 00:05:59 +02:00
683161d479
Merge branch 'development' into geom-fully-out-of-place
2020-09-22 15:22:58 -04:00
05835bacd3
removed set_X(), duplicate(), and .homogenization; renamed ".microstructure" to ".materials"
2020-09-22 14:49:28 -04:00
716a406361
Merge remote-tracking branch 'origin/master' into modernize-testing
2020-09-22 16:51:36 +02:00
7801f527f2
Merge remote-tracking branch 'origin/load-save-X-no-suffix' into development
2020-09-22 14:57:39 +02:00
5ef761fb98
inform the user about missing items in material.yaml
2020-09-21 19:10:20 +02:00
188905766f
removed Geom.get_X() methods in favor of direct property access
2020-09-21 11:13:53 -04:00
ca2f3f9493
set_X and add_comments methods now default to out-of-place
2020-09-21 10:29:07 -04:00
7bdd44a3d9
consistent names:
...
default file operations: save/load, non-default save_xx/load_xx
2020-09-20 22:04:28 +02:00
d33507866d
statistically more valid test
2020-09-20 21:50:52 +02:00
6ab88aad2b
default format for Table is ASCII
...
hence, renamed load_ASCII/save_ASCII to load/save
2020-09-20 20:45:06 +02:00
5895e74029
p is never above 1
...
1e-4 is quite low, usually we are far above. 1e-3 from https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.normaltest.html
is not too far away.
2020-09-20 19:13:54 +02:00
5b0b0de6b4
assertion reports offense; fixed seeds for spherical and fiber
2020-09-20 12:22:41 -04:00
3cc319ef08
removed debug print statement in test_util
2020-09-19 14:30:58 -04:00
7cbd422ae3
fixed coprime error when encountering NaN
2020-09-19 13:38:32 -04:00
6f45203c98
first version of a pyaml based class for material configuration
...
pyaml is (again) actively maintained and the ruamel.pyaml API is
instable
2020-09-19 13:01:19 +02:00
0746a2f3a4
give visual feedback
...
in most tests, this is done manually
2020-09-19 08:33:15 +02:00
c42511f101
small polishing
2020-09-18 16:32:59 +02:00
f23b89f055
get rid of annoying warning during test
2020-09-18 16:30:22 +02:00
c935ba1215
user friendly self reporting
2020-09-18 16:23:23 +02:00
1849ff0330
polishing
2020-09-18 15:03:51 +02:00
e2cd3da295
remaning to_xx
2020-09-18 14:29:27 +02:00
Philip Eisenlohr