2eb964b1ea
simplified
...
needs some manual checking and proper test
2019-05-28 23:49:11 +02:00
100a2031d3
[skip ci] no white space needed
2019-05-28 07:55:24 +02:00
1f56ac6a4a
streamlining and bugfixing of geom-class
2019-05-27 22:45:34 -06:00
b69f0efbbc
improved and simplified reporting
2019-05-27 22:00:26 +02:00
59c6c5cfe4
not needed anymore
...
essentially, (gauss) is an Euler angle triplet
2019-05-27 10:49:50 +02:00
6e06764e2d
using (enhanced) central functionality
2019-05-27 08:38:02 +02:00
d9ab87cfde
crystallite will be removed soon, error handling is done by geom class
2019-05-27 08:35:24 +02:00
b5cec797c0
cleaned
2019-05-26 23:03:31 +02:00
c8dfba89e5
using class
...
still a very complex script
2019-05-26 22:49:05 +02:00
15d5a7ae28
don't access attributes directly
2019-05-26 22:08:14 +02:00
f251cdb746
simplified
2019-05-26 22:07:50 +02:00
af493cf9fd
using class
...
needs more memory, but should be faster and is better readable
2019-05-26 21:32:08 +02:00
99da46fda8
polished
2019-05-26 20:36:41 +02:00
657a30c2f5
using new functionality
2019-05-26 18:51:27 +02:00
feb2340935
self-reporting functionality for updating
2019-05-26 17:58:54 +02:00
34f7bbe2a0
'blank' option does not fit to flow of script
...
seeds_fromRandom -N 1 | geom_fromVoronoiTessellation -g 30 30 30 -s 1 1 1 > file.geom
or a few lines of python code give the same results
2019-05-26 13:06:22 +02:00
e7b8ae08d0
polishing
2019-05-26 12:14:48 +02:00
974f67ffdc
no frills
2019-05-26 12:06:51 +02:00
be3513d1e0
polishing.
...
python imports follow PEP8
2019-05-26 09:49:56 +02:00
a242382bed
Merge branch 'geometry-class' of magit1.mpie.de:/damask/DAMASK into geometry-class
2019-05-26 09:19:29 +02:00
b13aa799c3
updated error message
2019-05-25 17:00:41 +02:00
c89d344236
polishing
2019-05-25 13:51:05 +02:00
2b7d95f800
was accidently commited
...
gives different results due to interpolation from scipy
2019-05-25 12:09:09 +02:00
c92969787a
geom Class was updated
2019-05-25 11:56:06 +02:00
94f85b7f33
better readable
2019-05-25 10:45:58 +02:00
fc1f65c34e
works for dtype='float'
2019-05-25 10:36:46 +02:00
875643c363
same style
2019-05-25 10:24:45 +02:00
17eb0d1b20
using new class
2019-05-25 08:48:44 +02:00
4788fc6046
making use of new class
...
@philip: 1D arrangement needed?
2019-05-25 08:37:02 +02:00
6c7f7c77da
specifying non-existing or invalid files is an user error
...
this is the standard behavior for common unix tools, no need to make an
exception here
2019-05-25 08:24:32 +02:00
cf374a04dc
using new class
2019-05-25 08:21:00 +02:00
420abfa162
use new class
2019-05-24 22:34:27 +02:00
eb13fbc0ce
streamlined geom-info reporting; added --float option to some scripts; hardened against NaN; "microstructures" now reports uniques not max
2019-05-23 13:03:24 -04:00
e6cec6ecbe
added option to reverse inside/outside of primitive body
2019-05-23 12:49:03 -04:00
ed7423a3d6
bug fixes
2019-03-10 08:16:01 +01:00
67619fa92a
consistent definition of axis angle
2019-03-09 20:18:28 +01:00
b84d4f1b6a
improved error handling/clearer messages
2019-03-05 10:58:57 +01:00
e030038b73
[skip ci] added --blank option to create fresh canvas (from nothing)
2019-02-27 19:37:38 -05:00
e401c21266
dropped obsolete option --inplace from geom_check
2019-02-25 18:30:45 -05:00
e88182b007
improved converte, now with test
...
still needs to figure out how +P is handled
2019-02-24 14:39:34 +01:00
0d7fd587e3
direct translation from DREAM.3D to DAMASK geom
...
needs test
2019-02-24 12:59:10 +01:00
903edcd429
do not patronize the user, rather give hints
2019-02-24 10:31:08 +01:00
d3ac3cc0f5
using new Orientation class
2019-02-24 08:34:20 +01:00
9dc8dff4b1
cleaning and adding compatibility layer
2019-02-23 22:35:04 +01:00
a8e8b75cc0
use new rotation class
2019-02-23 22:13:24 +01:00
fff377de7f
initial simplification.
...
Should be able to generate from table containing either <microstructure>
or <texture> and <phase>
2019-02-23 22:06:31 +01:00
b3455c825e
transition to new orientation class
...
forward-backward conversion quite stable
2019-02-23 21:49:05 +01:00
e4bb61c9d9
transition to new orientation class/DREAM.3D
2019-02-23 11:37:09 +01:00
93ae5cbd07
Merge remote-tracking branch 'origin/development' into 10-consistent-orientation-conversions-3
2019-02-22 23:05:36 +01:00
3bec76e781
can now deal with 1x1x1 geoms
2019-02-19 12:06:46 -05:00
25727bfa52
using CamelCase
2019-02-19 10:32:18 +01:00
27ebe1f665
improved documentation
2019-02-17 08:17:40 +01:00
dc133344b6
[skip ci] migrated to python3 compatibility
2019-02-14 18:44:06 -05:00
742d58cfce
added ASCIItable tests to CI pipelining
2019-02-14 18:24:09 -05:00
608852df83
rotation paper has angle as last component
2019-02-12 10:58:38 +01:00
97ac437686
more user friendly constructors
2019-02-12 08:14:27 +01:00
ef3fc0b58a
bugfix: wrong array indexing
...
rotation of meshgrid tuple implemented
2019-02-12 07:42:46 +01:00
48b0307fab
using new rotation class
...
cannot rotate matrices (3,3) and (3,3,3,3) at the moment
2019-02-12 00:27:13 +01:00
da115ca9d4
probably never used and outdated (python2.7)
...
doing the same conversion via DREAM.3D will be available soon
2019-01-16 17:51:37 +01:00
c5dabbb68f
correct comment sign
...
the # indicates the end of a list
2019-01-09 16:31:00 +01:00
0dca8d2740
compatible to python 3 and mentat >= 2017
2019-01-09 16:28:21 +01:00
9bdd4d1d68
added <!skip> line to stop config parser from trying to interpret rest of geom description---huge speedup!!
2018-12-20 17:22:29 -05:00
5d7f930592
math.isclose does not exist for older versions
...
np.isclose does the same
2018-12-17 20:04:16 +01:00
e8f4dc4c9f
Merge branch 'orientationClass_with_negative_P' into development
2018-12-06 07:26:08 +01:00
ee7e4ee0d9
python3 has different encoding syntax
2018-12-06 06:27:07 +01:00
a6d4c73de0
added list of map and introduced "quat" keyword in quaternion init
2018-12-05 10:20:05 -05:00
c0f7ae2798
updated scripts that still used formerly valid object properties of quaternions
2018-12-05 09:07:29 -05:00
1d7172c971
adopted more intutitive alternative of P=-1 from Rowenhorst_etal2015
2018-12-04 17:05:35 -05:00
7c1e2e256c
os.urandom returns byte, not string in python3
2018-11-24 10:07:47 +01:00
d53b01ab56
also works for python3
2018-11-18 08:04:52 +01:00
015e819d4c
python3 does not allow to compare tuple/list with int
2018-11-17 09:29:05 +01:00
82861e80bc
more python3 related changes
2018-11-17 08:46:58 +01:00
558745b548
explicitly require python3
...
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
50f880afd1
more scripts working with python3
2018-11-16 19:32:17 +01:00
9922f5f646
adjusted to python3
...
translate is more complicated now:
https://stackoverflow.com/questions/41708770
2018-11-16 12:23:45 +01:00
a3647cc587
more files with confirmed python3 compatibility
2018-11-16 09:03:12 +01:00
e9e3fef8d4
more python3 compatible scripts
2018-11-15 16:40:54 +01:00
a00d15b889
geom files are not labeled
2018-09-29 11:18:35 +02:00
8616a92309
unused module
2018-07-20 03:50:07 +02:00
24d1528e04
on the way to full python 3 compatibility
2018-07-20 03:31:46 +02:00
784ae28dbb
now working with python 3
2018-07-20 00:39:50 +02:00
9821654aae
iteritems does not exist in python3 anymore
...
items also works for python2 (might be slower though)
2018-07-19 16:16:10 +02:00
1b12457fe6
vicinityOffset to specific triggering IDs instead of just any other ID
2018-03-30 11:48:02 -04:00
0570a49ed5
fixed broken logic of restoring and preventing immutable microstructures
2018-03-27 16:53:49 -04:00
2c3eae6bf0
fixed tests and bug for very small unit cube fractions when grid is also small
2018-03-07 18:59:27 -05:00
32c34457c2
direct selection of valid seed coordinates within subfraction of unit cube instead of check and repeat
2018-03-07 17:45:22 -05:00
f5177b6d2d
[skip ci] added option for non-periodic geometries
2018-02-20 10:20:35 -05:00
ba3a4e1254
indicating vectors with 1_, ..., n_ is standard now, "euler" also (more or less)
2018-02-05 17:34:08 +01:00
4dfb52c792
unfinished HDF5 should not be part of the next release
2017-11-21 10:23:50 +01:00
eddc2a6acf
numpy actually not needed
2017-10-20 10:17:08 +02:00
0c24f113c1
split overlong line
2017-10-20 10:14:15 +02:00
26b8788c06
script to colocate 2D ang files into one §D file and optionally creat geometry and Paraview files
2017-10-20 09:36:57 +02:00
ff072ae3c4
fixed bug (lost orgin info)
2017-08-23 15:14:22 -04:00
9b6e092b5c
changed location where script appends itself to info trail
...
used to be sometimes at top, sometimes at bottom; now always after predecessor and above standard geom header
2017-08-23 14:09:33 -04:00
f825e91bf1
script to straighten numbering in geom
2017-08-23 14:08:11 -04:00
12fed7a38f
added option to use seed coordinates that are not normalized to a unit cube
2017-08-16 16:24:45 -04:00
4eff7cfdd8
fixed wrong name for "pos" options destination
2017-08-15 16:11:21 -04:00
1a423617c2
combined assignement of curvature exponent to deal with negative dimensions
2017-08-03 12:12:47 -04:00
84a3885af8
negated option from "voxelspace" to "realspace".
...
introduced logarithmic sense of curvature exponents, additional polishing
2017-08-03 12:08:51 -04:00
e5af0630fe
gaussian filter (wrapper no ndimage)
2017-05-29 10:33:05 +02:00
691f338f5d
executable bit got lost
2017-05-19 09:33:58 +02:00
ed85ce5bdb
changed argument handling in line with other scripts
...
now also works with stdin/out
2017-04-28 12:36:10 +02:00
d35df1df49
Operate on MFD file to apply servo links, not client-server communication
...
Speed up by many orders of magnitude... 64 x 64 x 64 mesh less than a minute! Thanks Brendan!
2017-04-26 17:32:01 -04:00
c34716a0da
modern form of croaking, added '*draw_automatic' as final output
2017-04-14 15:07:43 -04:00
d1c2e2114d
switch auto drawing back on at end of pipeline
2017-04-13 19:00:19 -04:00
95a982e002
default type for muliple arguments (not extend) is tuple, not list
2017-04-13 12:54:26 +02:00
0d648b8de0
Change script to use resolution-independent coords
...
- Use the --voxelspace flag to get the old behavior
2017-03-07 20:37:30 -05:00
de57d9514e
removed code doubling and unused variables
2017-03-05 17:50:17 +01:00
f010aa97d9
Fix non-cube geometry structure, reduce memory
2017-02-24 22:30:04 -05:00
e5e6bed5de
Improve performance and generalize primitive shape
...
- Behavior is mostly unchanged, but the primitive may be shifted by a voxel when compared to the previous version, which had rounding issues near the edge of the primitive.
- exponent flag specifies the exponents that satisfy the equation x^e1 + y^e2 + z^e3 < 1. (1,1,1) gives an octahedron, (2,2,2) a sphere, and large values (1e10, 1e10, 1e10) gives a hexahedral box for any reasonable resolution. Mixing the two can produce a cylinder, (1e10, 2, 2) gives one with rotational symmetry about the x-axis.
2017-02-24 00:42:28 -05:00
a9d72c54b6
was not python3 conforming
2017-02-04 01:07:24 +01:00
49eb7aa1be
fixed nasty ABS that caused wrong packing for 1,2,1,1,1,... and the like
2016-12-25 12:39:49 -05:00
3628deb30e
changed option name from "no-config" to more common "without-config"
2016-12-23 17:46:16 -05:00
d67be0e3f3
reduced memory footprint (substantially) by switching to 32bit precision
2016-12-08 23:36:19 -05:00
c8f321356d
prefill immutable indices with closest mutable one
...
Retain only orginially immutable locations, not those where immutability bled into.
Changed threshold for change from 0.5 to 0.95 of max diffusedEnergy.
2016-12-08 09:47:20 -05:00
9bb4f89e78
removed leftover debug output
2016-12-06 21:36:45 -05:00
a2db7e9ba1
added option to suppress writing of material.config part in header
2016-12-06 21:36:25 -05:00
cb95f3b244
fixed systematic drift of grain structure along -[1,1,1]
...
correction of periodic Gauss kernel extension, inclusion of ndimage.gaussian_filter alternative (same runtime as FFT), proper output handling of grids <3D
2016-11-30 09:39:13 -05:00
40de6910b8
added --float option to translate real-valued grid data
2016-11-29 23:59:42 -05:00
a04968d43f
Merge branch 'development' into negativeRange
2016-11-01 17:20:56 +01:00
8593fb3ed7
unifying scripts
2016-10-31 22:11:16 +01:00
4acfc73fa1
Merge branch 'Python3' into development
2016-10-31 11:28:40 -04:00
94fcc9ad24
fixed language and syntax
2016-10-31 10:40:58 -04:00
8eb93a3274
python scripts now pack "a a-1 a-2 ... a-n" to "a to a-n"
2016-10-29 10:49:40 +02:00
aa3dc56949
fixed handling of last line (bug fix for second but last commit)
2016-10-29 10:30:42 +02:00
7e6e2e1c84
not using reserverd keyword "type"
2016-10-29 10:28:34 +02:00
1a56ad7a72
no logic change yet
2016-10-29 10:21:00 +02:00
6d9d25ea43
python 3 compatible and modernized
2016-10-28 15:40:17 +02:00
e43e37aae1
new style option setting
2016-10-27 23:06:17 +02:00
8a94f55a2e
python 3 compatibility
2016-10-25 06:44:12 +02:00
f78f89fb12
periodic microstructure needs to be updated per iteration (N).
...
now calling script twice gives the same result as one call with N=2.
results for N=1 are not affected
2016-10-05 15:24:37 +02:00
3abf0bc2d3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-27 06:22:52 +02:00
0ffd74d536
correct flag "data" for updated vtk_addRectilinearGridData
2016-09-26 16:32:39 -04:00
1d06e82700
grain circumference identification
...
fixed right most path selection criteria for grain circumference
2016-09-26 16:30:50 -04:00
5345b42d71
improved robustness against faulty RCB data
...
deals gracefully with duplicate segments, new option to export cleaned up RCB
2016-09-25 21:18:53 -04:00
e20623845a
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-22 16:14:07 +02:00
25103205a8
bug fix, adjust to options change of vtk_addXXXData
2016-09-21 22:01:16 +02:00
0f636bf6c3
not needed
2016-09-21 17:47:37 +02:00
4cd8fe7f36
indices should be integers (visible warning)
2016-09-21 17:45:23 +02:00
43457dcfc5
flexible selection of axes
2016-09-21 17:43:07 +02:00
4ccc0cf5a1
tool to mirror geometries (enforce periodicity on measured data)
2016-09-21 17:06:50 +02:00
1180c8bb88
Fix calculation of interfaceEnergy
2016-09-15 17:36:43 -04:00
eb69d6f4f1
Merged branch development into development
2016-09-14 19:42:15 -04:00
59c1eee16b
added possibility to restrict seed coordinates to fraction of unit box
2016-09-14 19:42:05 -04:00
804931db9e
force type cast index to int for numpy array
...
Force type casting indices into int array to avoid warning:
VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future
For more info, see http://stackoverflow.com/questions/20084218/deprecation-warning-in-scikit-learn-svmlight-format-loader
2016-09-12 19:09:48 -04:00
c05307a273
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-03 14:35:53 +02:00
f984f1ebea
enable floating point data and corrected counting of microstructures
2016-08-24 16:05:50 -04:00
7710f4d444
hybridIA (stand alone script and DAMASK) need standard ASCII table
...
export of TSL OIM is similar to standard ASCII table, simply add correct header
including labels
2016-08-23 17:21:17 +02:00
2a0be6d232
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-27 08:57:13 +02:00
1195593233
some casting was needed, corrected header
2016-07-25 19:39:09 +02:00
99963ca1dd
Merged branch development into development
2016-07-24 19:19:03 -04:00
6f527b2af8
fixed upperCase typo in vtk_addPointcloudData call
2016-07-24 19:18:48 -04:00
cd63a92733
using python 2.7 has shebang will also work on mac without symlink
...
unless someone uses the 6 year old python 2.6, this should be save
2016-07-18 19:35:35 +02:00
1b30b186f4
rootRelation keyword was still used
2016-07-18 06:17:22 +02:00
40414c767c
like ang_toTable (not sure if both are needed anyway)
2016-07-15 21:03:10 +02:00
e8153ad196
corrected name
2016-07-15 15:48:53 +02:00
c792b73b4e
simplified
2016-07-15 14:52:48 +02:00
7d84b99710
bugfix: axis out of bounds for np.repeat, np.tile seems to be ok @Philip: pls check. autodoc friendly help
2016-07-15 10:34:17 +02:00
9e8adf731b
fixed buggy a.all() call
...
removed squaring of Laguerre weights (no clue why we considered this a good idea in the first place)
2016-07-07 15:23:01 -04:00
be99018ce3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-05-18 18:28:57 +02:00
a7c15b4c00
avoided quoting of "N of x" and "a to b".
2016-05-17 11:29:31 -04:00
fa3d8fa460
adopted description/simplified
2016-05-17 11:05:50 +02:00
fa5ebdd46b
added correct metavar
2016-05-13 09:43:56 +02:00
61c93bdbf4
adjusted help message for automated documentation
2016-05-12 08:54:34 +02:00
a21e8cd863
usind explicitly python2 to run in environments with python 3 as default
2016-05-11 11:01:39 +02:00
d497503411
renamed options.coords/options.coordinates consistently to options.pos
2016-04-26 22:49:58 +02:00
0f0ca8cd71
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-25 10:24:30 -05:00
36f41341ec
Merge branch 'SimplifiedvtkRectilinear' into development
2016-04-25 10:23:50 -05:00
7ed4ce859a
remove obsolete geom_frombarucentric script for microstructure reconstruction
2016-04-25 09:24:05 -04:00
2eb7ad7432
polishing
2016-04-25 12:59:15 +02:00
7ce208019c
Merge branch 'development' into miscImprovements
2016-04-25 12:36:02 +02:00
469ec4b00e
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-25 12:33:06 +02:00
d6002bdb10
removed remaining argument line
2016-04-25 09:08:24 +02:00
e8afd57536
seems to work
2016-04-25 08:40:36 +02:00
db7c4bba45
same functionality can be accomplished with existing scripts.
...
addEuclideanDistance + geom_fromTable
(reLabel) + specify grid and size
2016-04-24 14:18:29 -05:00
2daa162da2
renamed option "position" to "seedposition". now uses util.report_geom.
2016-04-24 14:12:10 -05:00
4b7b473d2b
superseded by more modern vtk_* machinery
2016-04-24 13:46:25 -05:00
478acb96ce
exchanged by more modern vtk_* machinery...
2016-04-24 13:38:36 -05:00
33391fcf5b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-24 18:58:32 +02:00
ac9a9cb6ac
scripts deemed useless
2016-04-24 18:56:13 +02:00
f1b5d40bac
now uses util.report_geometry. some additional modernizing on the fly.
2016-04-24 11:24:00 -05:00
c37c0a8ed9
added awareness for Laguerre weights
2016-04-24 11:22:54 -05:00
f42c316aa2
updated help
2016-04-24 10:14:16 -05:00
9e5a8d2391
modernized string formatting, updated help strings, using label_indexrange for data-slicing.
2016-04-24 10:09:28 -05:00
3b53d1bc82
polished option help messages
2016-04-22 14:20:36 -05:00
24d029c7ed
speed up (x 5 to 10) identification of most frequent microstructure index
2016-04-15 18:54:09 -04:00
18f18aa4b9
detabbing
2016-04-11 19:55:55 +02:00
b1d714581c
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-10 15:40:52 +02:00
b0496f20ca
grouped command line options.
...
removed functionality to add random second phase.
2016-04-08 17:47:02 -04:00
2354cd609a
small polishing of help.
...
added option to change output number format.
2016-04-08 17:46:06 -04:00
97314619cc
corrections
2016-03-26 19:59:05 +01:00
7423c1a06a
not needed anymore
2016-03-24 18:47:11 +01:00
04d2148e61
will replace geom_fromAng (in combination with geom_fromTable)
2016-03-24 17:55:15 +01:00
809f03bef5
new printing for python3 and corrected help
2016-03-23 17:02:51 +01:00
900d2f7bf2
output follows damask.croak syntax
2016-03-23 11:05:36 +01:00
a41cd3df40
added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid.
2016-03-20 16:46:35 -04:00
6865987ea7
restored option to output microstructure indices as one-dimensional list (not clear why that got lost!)
2016-03-20 15:01:47 -04:00
0f78f1c747
possibility to treat floating point numbers as microstructure indices
2016-03-17 18:09:22 -04:00
4dfd59a9e2
output complete microstructure and texture info instead of limiting to grainIDs used in geometry
2016-03-07 22:15:40 -05:00
f13ba71f6e
fixed typo
2016-03-04 17:24:13 +01:00
Martin Diehl