2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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!> @author Vitesh Shah, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Yi-Chin Yang, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Jennifer Nastola, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
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!--------------------------------------------------------------------------------------------------
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2018-11-15 11:58:34 +05:30
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module HDF5_utilities
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2019-04-04 15:19:23 +05:30
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use prec
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use IO
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use HDF5
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2018-08-05 10:11:35 +05:30
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#ifdef PETSc
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2019-04-04 15:19:23 +05:30
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use PETSC
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2018-08-05 10:11:35 +05:30
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#endif
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2018-08-03 12:23:37 +05:30
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2018-10-09 18:16:57 +05:30
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implicit none
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2018-12-12 12:15:20 +05:30
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public
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2018-08-03 12:23:37 +05:30
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-02-09 14:08:49 +05:30
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!> @brief reads pInt or pReal data of defined shape from file ! ToDo: order of arguments wrong
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2019-02-09 14:14:41 +05:30
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!> @details for parallel IO, all dimension except for the last need to match
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-04-04 15:19:23 +05:30
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interface HDF5_read
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module procedure HDF5_read_real1
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module procedure HDF5_read_real2
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module procedure HDF5_read_real3
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module procedure HDF5_read_real4
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module procedure HDF5_read_real5
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module procedure HDF5_read_real6
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module procedure HDF5_read_real7
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module procedure HDF5_read_int1
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module procedure HDF5_read_int2
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module procedure HDF5_read_int3
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module procedure HDF5_read_int4
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module procedure HDF5_read_int5
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module procedure HDF5_read_int6
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module procedure HDF5_read_int7
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end interface HDF5_read
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2018-10-09 14:27:06 +05:30
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-02-09 14:08:49 +05:30
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!> @brief writes pInt or pReal data of defined shape to file ! ToDo: order of arguments wrong
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2019-02-09 14:14:41 +05:30
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!> @details for parallel IO, all dimension except for the last need to match
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-04-04 15:19:23 +05:30
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interface HDF5_write
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module procedure HDF5_write_real1
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module procedure HDF5_write_real2
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module procedure HDF5_write_real3
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module procedure HDF5_write_real4
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module procedure HDF5_write_real5
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module procedure HDF5_write_real6
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module procedure HDF5_write_real7
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module procedure HDF5_write_int1
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module procedure HDF5_write_int2
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module procedure HDF5_write_int3
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module procedure HDF5_write_int4
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module procedure HDF5_write_int5
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module procedure HDF5_write_int6
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module procedure HDF5_write_int7
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2019-04-07 16:56:23 +05:30
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module procedure HDF5_write_rotation
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2019-04-04 15:19:23 +05:30
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end interface HDF5_write
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2018-12-17 20:45:16 +05:30
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2018-12-15 21:51:03 +05:30
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!--------------------------------------------------------------------------------------------------
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!> @brief attached attributes of type char,pInt or pReal to a file/dataset/group
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!--------------------------------------------------------------------------------------------------
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2019-04-04 15:19:23 +05:30
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interface HDF5_addAttribute
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module procedure HDF5_addAttribute_str
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module procedure HDF5_addAttribute_int
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module procedure HDF5_addAttribute_real
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end interface HDF5_addAttribute
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2018-12-17 20:45:16 +05:30
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2018-12-15 21:51:03 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-04-04 15:19:23 +05:30
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public :: &
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HDF5_utilities_init, &
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HDF5_openFile, &
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HDF5_closeFile, &
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HDF5_addAttribute, &
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HDF5_closeGroup ,&
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HDF5_openGroup, &
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HDF5_addGroup, &
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HDF5_read, &
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HDF5_write, &
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HDF5_setLink, &
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HDF5_objectExists
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2018-08-03 12:23:37 +05:30
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contains
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2019-04-04 15:19:23 +05:30
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!--------------------------------------------------------------------------------------------------
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!> @brief open libary and do sanity checks
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!--------------------------------------------------------------------------------------------------
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2018-11-15 11:58:34 +05:30
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subroutine HDF5_utilities_init
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2018-08-03 12:23:37 +05:30
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2019-03-06 21:03:39 +05:30
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implicit none
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2019-03-09 21:21:50 +05:30
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integer :: hdferr
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2019-03-06 21:03:39 +05:30
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integer(SIZE_T) :: typeSize
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2018-08-03 12:23:37 +05:30
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2019-03-06 21:03:39 +05:30
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write(6,'(/,a)') ' <<<+- HDF5_Utilities init -+>>>'
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2018-08-03 12:23:37 +05:30
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2018-10-09 17:43:51 +05:30
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!--------------------------------------------------------------------------------------------------
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!initialize HDF5 library and check if integer and float type size match
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2019-03-06 21:03:39 +05:30
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call h5open_f(hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5open_f')
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call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5tget_size_f (int)')
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if (int(bit_size(0),SIZE_T)/=typeSize*8) &
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call IO_error(0_pInt,ext_msg='Default integer size does not match H5T_NATIVE_INTEGER')
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call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1,ext_msg='HDF5_Utilities_init: h5tget_size_f (double)')
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if (int(storage_size(0.0_pReal),SIZE_T)/=typeSize*8) &
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call IO_error(0,ext_msg='pReal does not match H5T_NATIVE_DOUBLE')
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2018-11-09 20:41:19 +05:30
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2018-11-15 11:58:34 +05:30
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end subroutine HDF5_utilities_init
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2018-08-03 12:23:37 +05:30
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2018-10-04 20:30:24 +05:30
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!--------------------------------------------------------------------------------------------------
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!> @brief open and initializes HDF5 output file
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!--------------------------------------------------------------------------------------------------
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2019-03-09 03:46:35 +05:30
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integer(HID_T) function HDF5_openFile(fileName,mode,parallel) ! ToDo: simply "open" is enough
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2018-11-09 20:41:19 +05:30
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2019-04-04 15:19:23 +05:30
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implicit none
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character(len=*), intent(in) :: fileName
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character, intent(in), optional :: mode
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logical, intent(in), optional :: parallel
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character :: m
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integer(HID_T) :: plist_id
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integer :: hdferr
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if (present(mode)) then
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m = mode
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else
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m = 'r'
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endif
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call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5pcreate_f')
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2018-11-16 11:35:43 +05:30
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2018-11-15 11:58:34 +05:30
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#ifdef PETSc
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2019-04-04 15:19:23 +05:30
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if (present(parallel)) then; if (parallel) then
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call h5pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5pset_fapl_mpio_f')
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endif; endif
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2018-11-15 11:58:34 +05:30
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#endif
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2019-04-04 15:19:23 +05:30
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if (m == 'w') then
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call h5fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fcreate_f (w)')
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elseif(m == 'a') then
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call h5fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (a)')
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elseif(m == 'r') then
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call h5fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (r)')
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else
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call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f unknown access mode: '//trim(m))
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endif
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call h5pclose_f(plist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5pclose_f')
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2018-11-16 11:35:43 +05:30
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2018-10-04 20:30:24 +05:30
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end function HDF5_openFile
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2018-08-03 12:23:37 +05:30
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2018-11-15 11:37:59 +05:30
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2018-09-20 23:12:58 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-09 14:27:06 +05:30
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!> @brief close the opened HDF5 output file
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2018-09-20 23:12:58 +05:30
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_closeFile(fileHandle)
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2018-11-09 20:41:19 +05:30
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2019-04-04 15:19:23 +05:30
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implicit none
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integer(HID_T), intent(in) :: fileHandle
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integer :: hdferr
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call h5fclose_f(fileHandle,hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeFile: h5fclose_f')
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2018-09-20 23:12:58 +05:30
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end subroutine HDF5_closeFile
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2018-08-03 12:23:37 +05:30
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2018-09-20 23:12:58 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-12-05 03:39:25 +05:30
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!> @brief adds a new group to the fileHandle
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2018-09-20 23:12:58 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-12-05 03:39:25 +05:30
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integer(HID_T) function HDF5_addGroup(fileHandle,groupName)
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2018-09-20 23:12:58 +05:30
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2019-04-04 15:19:23 +05:30
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implicit none
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integer(HID_T), intent(in) :: fileHandle
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character(len=*), intent(in) :: groupName
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integer :: hdferr
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integer(HID_T) :: aplist_id
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2018-11-22 00:05:37 +05:30
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2019-04-04 15:19:23 +05:30
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!-------------------------------------------------------------------------------------------------
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! creating a property list for data access properties
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call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup: h5pcreate_f ('//trim(groupName)//')')
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2018-12-05 03:39:25 +05:30
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2019-04-04 15:19:23 +05:30
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!-------------------------------------------------------------------------------------------------
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! setting I/O mode to collective
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2019-03-09 21:21:50 +05:30
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#ifdef PETSc
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2019-04-04 15:19:23 +05:30
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call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')')
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2019-03-09 21:21:50 +05:30
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#endif
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2018-12-05 03:39:25 +05:30
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2019-04-04 15:19:23 +05:30
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!-------------------------------------------------------------------------------------------------
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! Create group
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call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup, hdferr, OBJECT_NAMELEN_DEFAULT_F,gapl_id = aplist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup: h5gcreate_f ('//trim(groupName)//')')
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2018-11-09 20:41:19 +05:30
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2018-12-05 03:39:25 +05:30
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end function HDF5_addGroup
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2018-09-20 23:12:58 +05:30
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2018-08-03 12:23:37 +05:30
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2018-10-04 20:30:24 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-11-09 20:41:19 +05:30
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!> @brief open an existing group of a file
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2018-10-04 20:30:24 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-12-05 03:39:25 +05:30
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integer(HID_T) function HDF5_openGroup(fileHandle,groupName)
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2018-10-04 20:30:24 +05:30
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2019-04-04 15:19:23 +05:30
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implicit none
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integer(HID_T), intent(in) :: fileHandle
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character(len=*), intent(in) :: groupName
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integer :: hdferr
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integer(HID_T) :: aplist_id
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logical :: is_collective
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2018-11-30 22:03:30 +05:30
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2018-11-30 14:46:04 +05:30
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!-------------------------------------------------------------------------------------------------
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2018-12-05 03:39:25 +05:30
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! creating a property list for data access properties
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2019-04-04 15:19:23 +05:30
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call h5pcreate_f(H5P_GROUP_ACCESS_F, aplist_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_openGroup: h5pcreate_f ('//trim(groupName)//')')
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2018-12-05 03:39:25 +05:30
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2018-11-30 14:46:04 +05:30
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!-------------------------------------------------------------------------------------------------
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2018-12-05 03:39:25 +05:30
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! setting I/O mode to collective
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2019-03-09 21:21:50 +05:30
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#ifdef PETSc
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2019-04-04 15:19:23 +05:30
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call h5pget_all_coll_metadata_ops_f(aplist_id, is_collective, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_openGroup: h5pset_all_coll_metadata_ops_f ('//trim(groupName)//')')
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2019-03-09 21:21:50 +05:30
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#endif
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2018-12-05 03:39:25 +05:30
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!-------------------------------------------------------------------------------------------------
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! opening the group
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2019-04-04 15:19:23 +05:30
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call h5gopen_f(fileHandle, trim(groupName), HDF5_openGroup, hdferr, gapl_id = aplist_id)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_openGroup: h5gopen_f ('//trim(groupName)//')')
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2018-10-04 20:30:24 +05:30
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2018-12-05 03:39:25 +05:30
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end function HDF5_openGroup
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2018-10-04 20:30:24 +05:30
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2018-08-03 12:23:37 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-11-09 20:41:19 +05:30
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|
|
!> @brief close a group
|
2018-08-03 12:23:37 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-12-18 11:04:18 +05:30
|
|
|
subroutine HDF5_closeGroup(group_id)
|
2018-08-03 12:23:37 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer(HID_T), intent(in) :: group_id
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
|
|
|
|
|
call h5gclose_f(group_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_closeGroup: h5gclose_f (el is ID)', el = int(group_id,pInt))
|
2018-08-03 12:23:37 +05:30
|
|
|
|
|
|
|
|
end subroutine HDF5_closeGroup
|
|
|
|
|
|
|
|
|
|
|
2018-12-18 11:04:18 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief check whether a group or a dataset exists
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
logical function HDF5_objectExists(loc_id,path)
|
|
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id
|
|
|
|
|
character(len=*), intent(in), optional :: path
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
character(len=256) :: p
|
|
|
|
|
|
|
|
|
|
if (present(path)) then
|
|
|
|
|
p = trim(path)
|
|
|
|
|
else
|
|
|
|
|
p = '.'
|
|
|
|
|
endif
|
2018-12-18 11:04:18 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
call h5lexists_f(loc_id, p, HDF5_objectExists, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_objectExists: h5oexists_by_name_f')
|
|
|
|
|
|
|
|
|
|
if(HDF5_objectExists) then
|
|
|
|
|
call h5oexists_by_name_f(loc_id, p, HDF5_objectExists, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_objectExists: h5oexists_by_name_f')
|
|
|
|
|
endif
|
2018-12-18 11:04:18 +05:30
|
|
|
|
|
|
|
|
end function HDF5_objectExists
|
|
|
|
|
|
|
|
|
|
|
2018-11-18 17:11:05 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-12-17 20:45:16 +05:30
|
|
|
!> @brief adds a string attribute to the path given relative to the location
|
2018-11-18 17:11:05 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-12-17 20:45:16 +05:30
|
|
|
subroutine HDF5_addAttribute_str(loc_id,attrLabel,attrValue,path)
|
2018-11-18 17:11:05 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id
|
|
|
|
|
character(len=*), intent(in) :: attrLabel, attrValue
|
|
|
|
|
character(len=*), intent(in), optional :: path
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: attr_id, space_id, type_id
|
|
|
|
|
logical :: attrExists
|
|
|
|
|
character(len=256) :: p
|
|
|
|
|
|
|
|
|
|
if (present(path)) then
|
|
|
|
|
p = trim(path)
|
|
|
|
|
else
|
|
|
|
|
p = '.'
|
|
|
|
|
endif
|
2018-12-17 20:45:16 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5screate_f')
|
|
|
|
|
call h5tcopy_f(H5T_NATIVE_CHARACTER, type_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5tcopy_f')
|
|
|
|
|
call h5tset_size_f(type_id, int(len(trim(attrValue)),HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5tset_size_f')
|
|
|
|
|
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5aexists_by_name_f')
|
|
|
|
|
if (attrExists) then
|
|
|
|
|
call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5adelete_by_name_f')
|
|
|
|
|
endif
|
|
|
|
|
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5acreate_f')
|
|
|
|
|
call h5awrite_f(attr_id, type_id, trim(attrValue), int([1],HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5awrite_f')
|
|
|
|
|
call h5aclose_f(attr_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5aclose_f')
|
|
|
|
|
call h5tclose_f(type_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5tclose_f')
|
|
|
|
|
call h5sclose_f(space_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_str: h5sclose_f')
|
2018-11-18 17:11:05 +05:30
|
|
|
|
2018-12-17 20:45:16 +05:30
|
|
|
end subroutine HDF5_addAttribute_str
|
2018-11-18 17:11:05 +05:30
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-12-17 20:45:16 +05:30
|
|
|
!> @brief adds a integer attribute to the path given relative to the location
|
2018-11-18 17:11:05 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_addAttribute_int(loc_id,attrLabel,attrValue,path)
|
2018-11-18 17:11:05 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id
|
|
|
|
|
character(len=*), intent(in) :: attrLabel
|
|
|
|
|
integer(pInt), intent(in) :: attrValue
|
|
|
|
|
character(len=*), intent(in), optional :: path
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: attr_id, space_id, type_id
|
|
|
|
|
logical :: attrExists
|
|
|
|
|
character(len=256) :: p
|
|
|
|
|
|
|
|
|
|
if (present(path)) then
|
|
|
|
|
p = trim(path)
|
|
|
|
|
else
|
|
|
|
|
p = '.'
|
|
|
|
|
endif
|
2018-12-17 20:45:16 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5screate_f')
|
|
|
|
|
call h5tcopy_f(H5T_NATIVE_INTEGER, type_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5tcopy_f')
|
|
|
|
|
call h5tset_size_f(type_id, 1_HSIZE_T, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5tset_size_f')
|
|
|
|
|
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5aexists_by_name_f')
|
|
|
|
|
if (attrExists) then
|
|
|
|
|
call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5adelete_by_name_f')
|
|
|
|
|
endif
|
|
|
|
|
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5acreate_f')
|
|
|
|
|
call h5awrite_f(attr_id, type_id, attrValue, int([1],HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5awrite_f')
|
|
|
|
|
call h5aclose_f(attr_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5aclose_f')
|
|
|
|
|
call h5tclose_f(type_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5tclose_f')
|
|
|
|
|
call h5sclose_f(space_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pInt: h5sclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_addAttribute_int
|
2018-11-18 17:11:05 +05:30
|
|
|
|
|
|
|
|
|
2018-12-15 21:51:03 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-12-17 20:45:16 +05:30
|
|
|
!> @brief adds a integer attribute to the path given relative to the location
|
2018-12-15 21:51:03 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_addAttribute_real(loc_id,attrLabel,attrValue,path)
|
2018-12-15 21:51:03 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id
|
|
|
|
|
character(len=*), intent(in) :: attrLabel
|
|
|
|
|
real(pReal), intent(in) :: attrValue
|
|
|
|
|
character(len=*), intent(in), optional :: path
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: attr_id, space_id, type_id
|
|
|
|
|
logical :: attrExists
|
|
|
|
|
character(len=256) :: p
|
|
|
|
|
|
|
|
|
|
if (present(path)) then
|
|
|
|
|
p = trim(path)
|
|
|
|
|
else
|
|
|
|
|
p = '.'
|
|
|
|
|
endif
|
2018-12-17 20:45:16 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
call h5screate_f(H5S_SCALAR_F,space_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5screate_f')
|
|
|
|
|
call h5tcopy_f(H5T_NATIVE_DOUBLE, type_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5tcopy_f')
|
|
|
|
|
call h5tset_size_f(type_id, 8_HSIZE_T, hdferr) ! ToDo
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5tset_size_f')
|
|
|
|
|
call h5aexists_by_name_f(loc_id,trim(p),attrLabel,attrExists,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5aexists_by_name_f')
|
|
|
|
|
if (attrExists) then
|
|
|
|
|
call h5adelete_by_name_f(loc_id, trim(p), attrLabel, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5adelete_by_name_f')
|
|
|
|
|
endif
|
|
|
|
|
call h5acreate_by_name_f(loc_id,trim(p),trim(attrLabel),type_id,space_id,attr_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5acreate_f')
|
|
|
|
|
call h5awrite_f(attr_id, type_id, attrValue, int([1],HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5awrite_f')
|
|
|
|
|
call h5aclose_f(attr_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5aclose_f')
|
|
|
|
|
call h5tclose_f(type_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5tclose_f')
|
|
|
|
|
call h5sclose_f(space_id,hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_addAttribute_pReal: h5sclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_addAttribute_real
|
2018-12-15 21:51:03 +05:30
|
|
|
|
|
|
|
|
|
2018-12-12 12:15:20 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief set link to object in results file
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-12-17 20:45:16 +05:30
|
|
|
subroutine HDF5_setLink(loc_id,target_name,link_name)
|
2018-12-12 12:15:20 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
character(len=*), intent(in) :: target_name, link_name
|
2018-12-17 20:45:16 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id
|
2019-04-04 15:19:23 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
logical :: linkExists
|
|
|
|
|
|
|
|
|
|
call h5lexists_f(loc_id, link_name,linkExists, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_setLink: h5lexists_soft_f ('//trim(link_name)//')')
|
|
|
|
|
if (linkExists) then
|
|
|
|
|
call h5ldelete_f(loc_id,link_name, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_setLink: h5ldelete_soft_f ('//trim(link_name)//')')
|
|
|
|
|
endif
|
|
|
|
|
call h5lcreate_soft_f(target_name, loc_id, link_name, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_setLink: h5lcreate_soft_f ('//trim(target_name)//' '//trim(link_name)//')')
|
2018-11-18 17:11:05 +05:30
|
|
|
|
2018-12-12 12:15:20 +05:30
|
|
|
end subroutine HDF5_setLink
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
|
2018-09-25 20:12:43 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pReal with 1 dimension
|
2018-10-09 18:16:57 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_real1(loc_id,dataset,datasetName,parallel)
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
real(pReal), intent(inout), dimension(:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: & ! ToDo: Fortran 2018 size(shape(A)) = rank(A)
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_real1: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2019-02-09 14:08:49 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_real1
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pReal with 2 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_real2(loc_id,dataset,datasetName,parallel)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
real(pReal), intent(inout), dimension(:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_real2: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_real2
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pReal with 2 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_real3(loc_id,dataset,datasetName,parallel)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
real(pReal), intent(inout), dimension(:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_real3: h5dread_f')
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_real3
|
2018-11-27 23:20:51 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pReal with 4 dimensions
|
2018-11-27 23:20:51 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_real4(loc_id,dataset,datasetName,parallel)
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
real(pReal), intent(inout), dimension(:,:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-23 20:19:43 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_real4: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_real4
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pReal with 5 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_real5(loc_id,dataset,datasetName,parallel)
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
real(pReal), intent(inout), dimension(:,:,:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_real5: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_real5
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2018-10-09 18:16:57 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pReal with 6 dimensions
|
2018-11-27 23:20:51 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_real6(loc_id,dataset,datasetName,parallel)
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
real(pReal), intent(inout), dimension(:,:,:,:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_real6: h5dread_f')
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_real6
|
2018-11-27 23:20:51 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pReal with 7 dimensions
|
2018-11-27 23:20:51 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_real7(loc_id,dataset,datasetName,parallel)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
real(pReal), intent(inout), dimension(:,:,:,:,:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_DOUBLE,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_real7: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_real7
|
2018-11-27 23:20:51 +05:30
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pInt with 1 dimension
|
2018-11-27 23:20:51 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_int1(loc_id,dataset,datasetName,parallel)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer, intent(inout), dimension(:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_int1: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2019-02-09 16:15:02 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_int1
|
2018-11-27 23:20:51 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pInt with 2 dimensions
|
2018-11-27 23:20:51 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_int2(loc_id,dataset,datasetName,parallel)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer, intent(inout), dimension(:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
2019-02-09 16:15:02 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_int2: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_int2
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pInt with 3 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_int3(loc_id,dataset,datasetName,parallel)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer, intent(inout), dimension(:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
2019-02-09 12:35:29 +05:30
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
2019-04-04 15:19:23 +05:30
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_int3: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_int3
|
2019-02-09 12:35:29 +05:30
|
|
|
|
2018-11-30 22:03:30 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pInt withh 4 dimensions
|
2018-11-27 23:20:51 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_int4(loc_id,dataset,datasetName,parallel)
|
2018-11-26 20:08:31 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer, intent(inout), dimension(:,:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2019-02-09 12:35:29 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_int4: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_int4
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pInt with 5 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_int5(loc_id,dataset,datasetName,parallel)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer, intent(inout), dimension(:,:,:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_int5: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_int5
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-09-25 20:12:43 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pInt with 6 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_int6(loc_id,dataset,datasetName,parallel)
|
2018-09-25 20:12:43 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer, intent(inout), dimension(:,:,:,:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-09-25 20:12:43 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_int6: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_int6
|
2018-10-05 12:26:06 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief read dataset of type pInt with 7 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_read_int7(loc_id,dataset,datasetName,parallel)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
implicit none
|
|
|
|
|
integer, intent(inout), dimension(:,:,:,:,:,:,:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer :: hdferr
|
2018-11-27 23:20:51 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-27 23:20:51 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 15:19:23 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! initialize HDF5 data structures
|
2019-04-04 15:19:23 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,.false.)
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call h5dread_f(dset_id, H5T_NATIVE_INTEGER,dataset,totalShape, hdferr,&
|
|
|
|
|
file_space_id = filespace_id, xfer_prp = plist_id, mem_space_id = memspace_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_read_int7: h5dread_f')
|
|
|
|
|
|
|
|
|
|
call finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_read_int7
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-02-09 14:14:41 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pReal with 1 dimension
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_real1(loc_id,dataset,datasetName,parallel)
|
2018-12-14 16:05:41 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
implicit none
|
2018-11-20 16:24:51 +05:30
|
|
|
real(pReal), intent(inout), dimension(:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 13:31:37 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-26 20:08:31 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape,loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape,loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_real1: h5dwrite_f')
|
|
|
|
|
endif
|
2018-10-05 12:26:06 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_real1
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pReal with 2 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_real2(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-11-20 16:24:51 +05:30
|
|
|
real(pReal), intent(inout), dimension(:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 13:31:37 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-26 20:08:31 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_real2: h5dwrite_f')
|
|
|
|
|
endif
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_real2
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pReal with 3 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_real3(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-11-20 16:24:51 +05:30
|
|
|
real(pReal), intent(inout), dimension(:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 13:31:37 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-26 20:08:31 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_real3: h5dwrite_f')
|
|
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_real3
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pReal with 4 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_real4(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-11-20 16:24:51 +05:30
|
|
|
real(pReal), intent(inout), dimension(:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 13:31:37 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-26 20:08:31 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_real4: h5dwrite_f')
|
|
|
|
|
endif
|
|
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_real4
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pReal with 5 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_real5(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-11-20 16:24:51 +05:30
|
|
|
real(pReal), intent(inout), dimension(:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 13:31:37 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-26 20:08:31 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_real5: h5dwrite_f')
|
|
|
|
|
endif
|
|
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_real5
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pReal with 6 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_real6(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-11-20 16:24:51 +05:30
|
|
|
real(pReal), intent(inout), dimension(:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 13:31:37 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-26 20:08:31 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_real6: h5dwrite_f')
|
|
|
|
|
endif
|
|
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_real6
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pReal with 7 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_real7(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-11-20 16:24:51 +05:30
|
|
|
real(pReal), intent(inout), dimension(:,:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 13:31:37 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-26 20:08:31 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_DOUBLE,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_real7: h5dwrite_f')
|
|
|
|
|
endif
|
|
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_real7
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pInt with 1 dimension
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_int1(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2019-04-04 12:42:57 +05:30
|
|
|
integer, intent(inout), dimension(:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-21 21:27:36 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-21 21:27:36 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 14:08:49 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_int1: h5dwrite_f')
|
|
|
|
|
endif
|
|
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_int1
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pInt with 2 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_int2(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2019-04-04 12:42:57 +05:30
|
|
|
integer, intent(inout), dimension(:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-21 21:27:36 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-21 21:27:36 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 14:08:49 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_int2: h5dwrite_f')
|
|
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_int2
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pInt with 3 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_int3(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2019-04-04 12:42:57 +05:30
|
|
|
integer, intent(inout), dimension(:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-21 21:27:36 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-21 21:27:36 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 14:08:49 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_int3: h5dwrite_f')
|
|
|
|
|
endif
|
|
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_int3
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pInt with 4 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_int4(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2019-04-04 12:42:57 +05:30
|
|
|
integer, intent(inout), dimension(:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-21 21:27:36 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-21 21:27:36 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 14:08:49 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_int4: h5dwrite_f')
|
|
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_int4
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pInt with 5 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_int5(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2019-04-04 12:42:57 +05:30
|
|
|
integer, intent(inout), dimension(:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-21 21:27:36 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-21 21:27:36 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 14:08:49 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_int5: h5dwrite_f')
|
|
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_int5
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pInt with 6 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_int6(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2019-04-04 12:42:57 +05:30
|
|
|
integer, intent(inout), dimension(:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-21 21:27:36 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-21 21:27:36 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 14:08:49 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_int6: h5dwrite_f')
|
|
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_int6
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief write dataset of type pInt with 7 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-04-04 15:19:23 +05:30
|
|
|
subroutine HDF5_write_int7(loc_id,dataset,datasetName,parallel)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2019-04-04 12:42:57 +05:30
|
|
|
integer, intent(inout), dimension(:,:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-21 21:27:36 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2018-11-21 21:27:36 +05:30
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-08 12:12:13 +05:30
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
2019-02-09 14:08:49 +05:30
|
|
|
myStart, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!---------------------------------------------------------------------------------------------------
|
2018-11-26 20:08:31 +05:30
|
|
|
! determine shape of dataset
|
2019-04-04 12:42:57 +05:30
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
if (any(myShape(1:size(myShape)-1) == 0)) return !< empty dataset (last dimension can be empty)
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,parallel)
|
2019-02-09 14:08:49 +05:30
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 12:42:57 +05:30
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,H5T_NATIVE_INTEGER,.false.)
|
2019-02-09 14:08:49 +05:30
|
|
|
endif
|
2018-11-21 21:27:36 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_int7: h5dwrite_f')
|
|
|
|
|
endif
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2019-04-04 15:19:23 +05:30
|
|
|
end subroutine HDF5_write_int7
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-08-03 12:23:37 +05:30
|
|
|
|
2019-04-07 16:56:23 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief writes a scalar orientation dataset
|
|
|
|
|
! ToDo: It might be possible to write the dataset as a whole
|
|
|
|
|
! ToDo: We could add the crystal structure as an attribute
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_write_rotation(loc_id,dataset,datasetName,parallel)
|
|
|
|
|
use rotations
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
|
|
|
|
|
|
|
|
|
implicit none
|
|
|
|
|
type(rotation), intent(in), dimension(:) :: dataset
|
|
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
real(pReal), dimension(4,size(dataset)) :: dataset_asArray
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id,dtype_id,w_id,x_id,y_id,z_id
|
|
|
|
|
integer(HSIZE_T), dimension(size(shape(dataset))) :: &
|
|
|
|
|
myStart, &
|
|
|
|
|
myShape, & !< shape of the dataset (this process)
|
|
|
|
|
totalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer(SIZE_T) :: type_size_real
|
|
|
|
|
integer :: i
|
|
|
|
|
|
|
|
|
|
do i = 1, size(dataset)
|
|
|
|
|
dataset_asArray(1:4,i) = dataset(i)%asQuaternion()
|
|
|
|
|
enddo
|
|
|
|
|
|
|
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! determine shape of dataset
|
|
|
|
|
myShape = int(shape(dataset),HSIZE_T)
|
|
|
|
|
|
|
|
|
|
!---------------------------------------------------------------------------------------------------
|
|
|
|
|
! compound type: name of phase section + position/index within results array
|
|
|
|
|
call h5tget_size_f(H5T_NATIVE_DOUBLE, type_size_real, hdferr)
|
|
|
|
|
|
|
|
|
|
call h5tcreate_f(H5T_COMPOUND_F, type_size_real*4_SIZE_T, dtype_id, hdferr)
|
|
|
|
|
call h5tinsert_f(dtype_id, "w", type_size_real*0_SIZE_T, H5T_NATIVE_DOUBLE, hdferr)
|
|
|
|
|
call h5tinsert_f(dtype_id, "x", type_size_real*1_SIZE_T, H5T_NATIVE_DOUBLE, hdferr)
|
|
|
|
|
call h5tinsert_f(dtype_id, "y", type_size_real*2_SIZE_T, H5T_NATIVE_DOUBLE, hdferr)
|
|
|
|
|
call h5tinsert_f(dtype_id, "z", type_size_real*3_SIZE_T, H5T_NATIVE_DOUBLE, hdferr)
|
|
|
|
|
|
|
|
|
|
if (present(parallel)) then
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,dtype_id,parallel)
|
|
|
|
|
else
|
|
|
|
|
call initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
|
|
|
|
myStart, totalShape, loc_id,myShape,datasetName,dtype_id,.false.)
|
|
|
|
|
endif
|
|
|
|
|
call h5pset_preserve_f(plist_id, .TRUE., hdferr)
|
|
|
|
|
|
|
|
|
|
if (product(totalShape) /= 0) then
|
|
|
|
|
call h5tcreate_f(H5T_COMPOUND_F, type_size_real, x_id, hdferr)
|
|
|
|
|
call h5tinsert_f(x_id, "x", 0_SIZE_T, H5T_NATIVE_DOUBLE, hdferr)
|
|
|
|
|
call h5tcreate_f(H5T_COMPOUND_F, type_size_real, w_id, hdferr)
|
|
|
|
|
call h5tinsert_f(w_id, "w", 0_SIZE_T, H5T_NATIVE_DOUBLE, hdferr)
|
|
|
|
|
call h5tcreate_f(H5T_COMPOUND_F, type_size_real, y_id, hdferr)
|
|
|
|
|
call h5tinsert_f(y_id, "y", 0_SIZE_T, H5T_NATIVE_DOUBLE, hdferr)
|
|
|
|
|
call h5tcreate_f(H5T_COMPOUND_F, type_size_real, z_id, hdferr)
|
|
|
|
|
call h5tinsert_f(z_id, "z", 0_SIZE_T, H5T_NATIVE_DOUBLE, hdferr)
|
|
|
|
|
|
|
|
|
|
call h5dwrite_f(dset_id, w_id,dataset_asArray(1,:),int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
call h5dwrite_f(dset_id, x_id,dataset_asArray(2,:),int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
call h5dwrite_f(dset_id, y_id,dataset_asArray(3,:),int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
call h5dwrite_f(dset_id, z_id,dataset_asArray(4,:),int(totalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_rotation: h5dwrite_f')
|
|
|
|
|
endif
|
|
|
|
|
|
|
|
|
|
call finalize_write(plist_id, dset_id, filespace_id, memspace_id)
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_write_rotation
|
|
|
|
|
|
|
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief initialize HDF5 handles, determines global shape and start for parallel read
|
2019-02-09 12:35:29 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine initialize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id, &
|
|
|
|
|
myStart, globalShape, &
|
|
|
|
|
loc_id,localShape,datasetName,parallel)
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
|
|
|
|
|
|
|
|
|
implicit none
|
2019-02-09 21:51:11 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
logical, intent(in) :: parallel
|
|
|
|
|
integer(HSIZE_T), intent(in), dimension(:) :: &
|
|
|
|
|
localShape
|
|
|
|
|
integer(HSIZE_T), intent(out), dimension(size(localShape,1)):: &
|
|
|
|
|
myStart, &
|
|
|
|
|
globalShape !< shape of the dataset (all processes)
|
|
|
|
|
integer(HID_T), intent(out) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
|
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
integer(pInt), dimension(worldsize) :: &
|
|
|
|
|
readSize !< contribution of all processes
|
|
|
|
|
integer :: ierr
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2019-02-09 21:51:11 +05:30
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!-------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
! creating a property list for transfer properties (is collective for MPI)
|
2019-02-09 12:35:29 +05:30
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
2019-02-09 21:51:11 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5pcreate_f')
|
2019-02-09 12:35:29 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
readSize = 0_pInt
|
|
|
|
|
readSize(worldrank+1) = int(localShape(ubound(localShape,1)),pInt)
|
|
|
|
|
#ifdef PETSc
|
|
|
|
|
if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5pset_dxpl_mpio_f')
|
2019-02-09 12:35:29 +05:30
|
|
|
call MPI_allreduce(MPI_IN_PLACE,readSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
2019-02-09 16:15:02 +05:30
|
|
|
if (ierr /= 0) call IO_error(894_pInt,ext_msg='initialize_read: MPI_allreduce')
|
2019-02-09 12:35:29 +05:30
|
|
|
endif
|
|
|
|
|
#endif
|
|
|
|
|
myStart = int(0,HSIZE_T)
|
|
|
|
|
myStart(ubound(myStart)) = int(sum(readSize(1:worldrank)),HSIZE_T)
|
|
|
|
|
globalShape = [localShape(1:ubound(localShape,1)-1),int(sum(readSize),HSIZE_T)]
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in memory (local shape)
|
2019-02-09 13:31:37 +05:30
|
|
|
call h5screate_simple_f(size(localShape), localShape, memspace_id, hdferr, localShape)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5screate_simple_f/memspace_id')
|
|
|
|
|
|
2019-02-09 12:35:29 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
! creating a property list for IO and set it to collective
|
|
|
|
|
call h5pcreate_f(H5P_DATASET_ACCESS_F, aplist_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5pcreate_f')
|
2019-03-09 21:21:50 +05:30
|
|
|
#ifdef PETSc
|
2019-02-09 12:35:29 +05:30
|
|
|
call h5pset_all_coll_metadata_ops_f(aplist_id, .true., hdferr)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5pset_all_coll_metadata_ops_f')
|
2019-03-09 21:21:50 +05:30
|
|
|
#endif
|
2019-02-09 12:35:29 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
! open the dataset in the file and get the space ID
|
|
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr, dapl_id = aplist_id)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5dopen_f')
|
2019-02-09 12:35:29 +05:30
|
|
|
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5dget_space_f')
|
2019-02-09 12:35:29 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! select a hyperslab (the portion of the current process) in the file
|
|
|
|
|
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, localShape, hdferr)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_read: h5sselect_hyperslab_f')
|
2019-02-09 12:35:29 +05:30
|
|
|
|
|
|
|
|
end subroutine initialize_read
|
|
|
|
|
|
2019-02-09 13:31:37 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief closes HDF5 handles
|
2019-02-09 14:08:49 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine finalize_read(dset_id, filespace_id, memspace_id, plist_id, aplist_id)
|
|
|
|
|
|
|
|
|
|
implicit none
|
|
|
|
|
integer(HID_T), intent(in) :: dset_id, filespace_id, memspace_id, plist_id, aplist_id
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2019-02-09 14:08:49 +05:30
|
|
|
|
|
|
|
|
call h5pclose_f(plist_id, hdferr)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='finalize_read: plist_id')
|
2019-02-09 14:08:49 +05:30
|
|
|
call h5dclose_f(dset_id, hdferr)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='finalize_read: h5dclose_f')
|
2019-02-09 14:08:49 +05:30
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='finalize_read: h5sclose_f/filespace_id')
|
2019-02-09 14:08:49 +05:30
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
2019-02-09 16:15:02 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='finalize_read: h5sclose_f/memspace_id')
|
2019-02-09 14:08:49 +05:30
|
|
|
|
|
|
|
|
end subroutine finalize_read
|
|
|
|
|
|
2019-02-09 16:15:02 +05:30
|
|
|
|
2019-02-09 14:08:49 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2019-02-09 16:15:02 +05:30
|
|
|
!> @brief initialize HDF5 handles, determines global shape and start for parallel write
|
2019-02-09 13:31:37 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine initialize_write(dset_id, filespace_id, memspace_id, plist_id, &
|
2019-04-04 13:33:52 +05:30
|
|
|
myStart, totalShape, &
|
|
|
|
|
loc_id,myShape,datasetName,datatype,parallel)
|
2019-02-09 13:31:37 +05:30
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
|
|
|
|
|
|
|
|
|
implicit none
|
2019-02-09 21:51:11 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2019-04-04 13:33:52 +05:30
|
|
|
logical, intent(in) :: parallel
|
|
|
|
|
integer(HID_T), intent(in) :: datatype
|
2019-02-09 21:51:11 +05:30
|
|
|
integer(HSIZE_T), intent(in), dimension(:) :: &
|
2019-04-04 13:33:52 +05:30
|
|
|
myShape
|
|
|
|
|
integer(HSIZE_T), intent(out), dimension(size(myShape,1)):: &
|
2019-02-09 13:31:37 +05:30
|
|
|
myStart, &
|
2019-04-04 13:33:52 +05:30
|
|
|
totalShape !< shape of the dataset (all processes)
|
2019-02-09 21:51:11 +05:30
|
|
|
integer(HID_T), intent(out) :: dset_id, filespace_id, memspace_id, plist_id
|
|
|
|
|
|
2019-04-04 13:33:52 +05:30
|
|
|
integer, dimension(worldsize) :: &
|
2019-02-09 21:51:11 +05:30
|
|
|
writeSize !< contribution of all processes
|
2019-02-09 13:31:37 +05:30
|
|
|
integer :: ierr
|
2019-03-09 21:21:50 +05:30
|
|
|
integer :: hdferr
|
2019-02-09 13:31:37 +05:30
|
|
|
|
|
|
|
|
!-------------------------------------------------------------------------------------------------
|
2019-04-04 13:33:52 +05:30
|
|
|
! creating a property list for transfer properties (is collective when reading in parallel)
|
2019-02-09 13:31:37 +05:30
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, hdferr)
|
2019-02-09 21:51:11 +05:30
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_write: h5pcreate_f')
|
2019-04-04 13:33:52 +05:30
|
|
|
#ifdef PETSc
|
|
|
|
|
if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_write: h5pset_dxpl_mpio_f')
|
|
|
|
|
endif
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#endif
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2019-02-09 13:31:37 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-04-04 13:33:52 +05:30
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! determine the global data layout among all processes
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2019-02-09 21:51:11 +05:30
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writeSize = 0_pInt
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2019-04-04 13:33:52 +05:30
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writeSize(worldrank+1) = int(myShape(ubound(myShape,1)),pInt)
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2019-02-09 13:31:37 +05:30
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#ifdef PETSc
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if (parallel) then
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2019-02-09 21:51:11 +05:30
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call MPI_allreduce(MPI_IN_PLACE,writeSize,worldsize,MPI_INT,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
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2019-02-09 16:15:02 +05:30
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if (ierr /= 0) call IO_error(894_pInt,ext_msg='initialize_write: MPI_allreduce')
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2019-02-09 13:31:37 +05:30
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endif
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#endif
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myStart = int(0,HSIZE_T)
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2019-02-09 21:51:11 +05:30
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myStart(ubound(myStart)) = int(sum(writeSize(1:worldrank)),HSIZE_T)
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2019-04-04 13:33:52 +05:30
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totalShape = [myShape(1:ubound(myShape,1)-1),int(sum(writeSize),HSIZE_T)]
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2019-02-09 13:31:37 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-02-09 16:15:02 +05:30
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! create dataspace in memory (local shape) and in file (global shape)
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2019-04-04 13:33:52 +05:30
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call h5screate_simple_f(size(myShape), myShape, memspace_id, hdferr, myShape)
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2019-02-09 16:15:02 +05:30
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_write: h5dopen_f')
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2019-04-04 13:33:52 +05:30
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call h5screate_simple_f(size(totalShape), totalShape, filespace_id, hdferr, totalShape)
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2019-02-09 16:15:02 +05:30
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_write: h5dget_space_f')
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2019-02-09 13:31:37 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-04-04 13:33:52 +05:30
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! create dataset in the file and select a hyperslab from it (the portion of the current process)
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2019-02-09 14:08:49 +05:30
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call h5dcreate_f(loc_id, trim(datasetName), datatype, filespace_id, dset_id, hdferr)
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2019-02-09 16:15:02 +05:30
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_write: h5dcreate_f')
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2019-04-04 13:33:52 +05:30
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call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, myShape, hdferr)
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2019-02-09 16:15:02 +05:30
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='initialize_write: h5sselect_hyperslab_f')
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2019-02-09 13:31:37 +05:30
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2019-04-04 13:33:52 +05:30
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2019-02-09 13:31:37 +05:30
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end subroutine initialize_write
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2019-02-09 14:14:41 +05:30
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!--------------------------------------------------------------------------------------------------
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2019-02-09 16:15:02 +05:30
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!> @brief closes HDF5 handles
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2019-02-09 14:14:41 +05:30
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!--------------------------------------------------------------------------------------------------
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subroutine finalize_write(plist_id, dset_id, filespace_id, memspace_id)
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2018-12-14 16:05:41 +05:30
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2019-02-09 14:14:41 +05:30
|
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implicit none
|
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integer(HID_T), intent(in) :: dset_id, filespace_id, memspace_id, plist_id
|
2019-03-09 21:21:50 +05:30
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|
integer :: hdferr
|
2018-12-14 16:05:41 +05:30
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|
2019-02-09 14:14:41 +05:30
|
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|
call h5pclose_f(plist_id, hdferr)
|
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|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='finalize_write: plist_id')
|
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|
call h5dclose_f(dset_id, hdferr)
|
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|
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|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='finalize_write: h5dclose_f')
|
|
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='finalize_write: h5sclose_f/filespace_id')
|
|
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='finalize_write: h5sclose_f/memspace_id')
|
2018-12-14 16:05:41 +05:30
|
|
|
|
2019-02-09 14:14:41 +05:30
|
|
|
end subroutine finalize_write
|
2018-12-14 16:05:41 +05:30
|
|
|
|
2019-02-09 14:14:41 +05:30
|
|
|
end module HDF5_Utilities
|
