2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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!> @author Vitesh Shah, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Yi-Chin Yang, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Jennifer Nastola, Max-Planck-Institut für Eisenforschung GmbH
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!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
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!--------------------------------------------------------------------------------------------------
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2018-11-15 11:58:34 +05:30
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module HDF5_utilities
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2018-08-03 12:23:37 +05:30
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use prec
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use IO
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use HDF5
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2018-08-05 10:11:35 +05:30
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#ifdef PETSc
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2018-08-03 12:23:37 +05:30
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use PETSC
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2018-08-05 10:11:35 +05:30
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#endif
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2018-08-03 12:23:37 +05:30
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2018-10-09 18:16:57 +05:30
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implicit none
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private
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2018-08-03 12:23:37 +05:30
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-10 21:24:55 +05:30
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!> @brief reads pInt or pReal data of defined shape from file
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-09 17:27:29 +05:30
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interface HDF5_read
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2018-10-10 21:24:55 +05:30
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module procedure HDF5_read_pReal_1
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module procedure HDF5_read_pReal_2
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module procedure HDF5_read_pReal_3
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module procedure HDF5_read_pReal_4
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module procedure HDF5_read_pReal_5
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module procedure HDF5_read_pReal_6
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module procedure HDF5_read_pReal_7
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2018-11-09 20:41:19 +05:30
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2018-10-10 21:24:55 +05:30
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module procedure HDF5_read_pInt_1
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module procedure HDF5_read_pInt_2
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module procedure HDF5_read_pInt_3
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module procedure HDF5_read_pInt_4
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module procedure HDF5_read_pInt_5
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module procedure HDF5_read_pInt_6
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2018-10-11 21:30:01 +05:30
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module procedure HDF5_read_pInt_7 !ABOVE 8 DIMENSIONS IT GIVES ERROR: THE CALL TO H5DREAD_F DOESNT WORK
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2018-11-09 20:41:19 +05:30
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2018-10-09 17:27:29 +05:30
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end interface HDF5_read
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2018-10-09 14:27:06 +05:30
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-10 21:24:55 +05:30
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!> @brief writes pInt or pReal data of defined shape to file
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-09 17:27:29 +05:30
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interface HDF5_write
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2018-10-10 21:24:55 +05:30
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module procedure HDF5_write_pReal1
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module procedure HDF5_write_pReal2
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module procedure HDF5_write_pReal3
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module procedure HDF5_write_pReal4
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module procedure HDF5_write_pReal5
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module procedure HDF5_write_pReal6
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module procedure HDF5_write_pReal7
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2018-11-09 20:41:19 +05:30
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2018-10-10 21:24:55 +05:30
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module procedure HDF5_write_pInt1
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module procedure HDF5_write_pInt2
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module procedure HDF5_write_pInt3
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module procedure HDF5_write_pInt4
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module procedure HDF5_write_pInt5
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module procedure HDF5_write_pInt6
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2018-10-11 21:30:01 +05:30
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module procedure HDF5_write_pInt7 !ABOVE 8 DIMENSIONS IT GIVES ERROR: THE CALL TO H5DREAD_F DOESNT WORK
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2018-11-09 20:41:19 +05:30
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2018-10-09 17:27:29 +05:30
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end interface HDF5_write
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2018-10-05 12:26:06 +05:30
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2018-08-03 12:23:37 +05:30
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public :: &
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2018-11-15 11:37:59 +05:30
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HDF5_utilities_init, &
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2018-08-03 12:23:37 +05:30
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HDF5_closeGroup ,&
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2018-10-04 20:30:24 +05:30
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HDF5_openGroup2, &
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2018-09-20 23:12:58 +05:30
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HDF5_closeFile, &
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2018-10-09 14:27:06 +05:30
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HDF5_addGroup2, &
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HDF5_openFile, &
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2018-10-09 17:27:29 +05:30
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HDF5_read, &
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HDF5_write
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2018-08-03 12:23:37 +05:30
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contains
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2018-11-15 11:58:34 +05:30
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subroutine HDF5_utilities_init
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2018-08-03 12:23:37 +05:30
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use, intrinsic :: &
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2018-10-11 21:30:01 +05:30
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iso_fortran_env ! to get compiler_version and compiler_options (at least for gfortran 4.6 at the moment)
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2018-08-03 12:23:37 +05:30
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implicit none
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integer :: hdferr
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2018-11-09 20:41:19 +05:30
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integer(SIZE_T) :: typeSize
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2018-08-03 12:23:37 +05:30
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write(6,'(/,a)') ' <<<+- HDF5_Utilities init -+>>>'
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#include "compilation_info.f90"
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2018-10-09 17:43:51 +05:30
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!--------------------------------------------------------------------------------------------------
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!initialize HDF5 library and check if integer and float type size match
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call h5open_f(hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5open_f')
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call h5tget_size_f(H5T_NATIVE_INTEGER,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5tget_size_f (int)')
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if (int(pInt,SIZE_T)/=typeSize) call IO_error(0_pInt,ext_msg='pInt does not match H5T_NATIVE_INTEGER')
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call h5tget_size_f(H5T_NATIVE_DOUBLE,typeSize, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_Utilities_init: h5tget_size_f (double)')
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if (int(pReal,SIZE_T)/=typeSize) call IO_error(0_pInt,ext_msg='pReal does not match H5T_NATIVE_DOUBLE')
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2018-11-09 20:41:19 +05:30
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2018-11-15 11:58:34 +05:30
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end subroutine HDF5_utilities_init
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2018-08-03 12:23:37 +05:30
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2018-10-04 20:30:24 +05:30
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!--------------------------------------------------------------------------------------------------
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!> @brief open and initializes HDF5 output file
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!--------------------------------------------------------------------------------------------------
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2018-11-15 11:58:34 +05:30
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integer(HID_T) function HDF5_openFile(fileName,mode,parallel)
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2018-11-09 20:41:19 +05:30
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2018-10-04 20:30:24 +05:30
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implicit none
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2018-10-09 19:42:32 +05:30
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character(len=*), intent(in) :: fileName
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2018-10-09 18:45:08 +05:30
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character, intent(in), optional :: mode
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2018-11-15 11:58:34 +05:30
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logical, intent(in), optional :: parallel
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2018-10-09 18:45:08 +05:30
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character :: m
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2018-11-15 11:58:34 +05:30
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integer(HID_T) :: plist_id
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2018-10-04 20:30:24 +05:30
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integer :: hdferr
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2018-10-09 18:45:08 +05:30
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if (present(mode)) then
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m = mode
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else
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m = 'r'
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endif
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2018-11-09 20:41:19 +05:30
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2018-11-16 11:35:43 +05:30
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call h5pcreate_f(H5P_FILE_ACCESS_F, plist_id, hdferr)
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if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5pcreate_f')
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2018-11-15 11:58:34 +05:30
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#ifdef PETSc
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if (present(parallel)) then; if (parallel) then
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call h5pset_fapl_mpio_f(plist_id, PETSC_COMM_WORLD, MPI_INFO_NULL, hdferr)
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2018-11-16 11:35:43 +05:30
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if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5pset_fapl_mpio_f')
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2018-11-15 11:58:34 +05:30
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endif; endif
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#endif
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2018-11-16 11:35:43 +05:30
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if (m == 'w') then
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call h5fcreate_f(fileName,H5F_ACC_TRUNC_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fcreate_f',el=hdferr)
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2018-10-09 19:42:32 +05:30
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elseif(m == 'a') then
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2018-11-16 11:35:43 +05:30
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call h5fopen_f(fileName,H5F_ACC_RDWR_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (a)',el=hdferr)
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2018-10-09 18:45:08 +05:30
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elseif(m == 'r') then
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2018-11-16 11:35:43 +05:30
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call h5fopen_f(fileName,H5F_ACC_RDONLY_F,HDF5_openFile,hdferr,access_prp = plist_id)
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if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f (r)',el=hdferr)
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2018-10-09 18:45:08 +05:30
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else
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2018-11-16 11:35:43 +05:30
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call IO_error(1_pInt,ext_msg='HDF5_openFile: h5fopen_f unknown access mode')
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2018-10-09 18:45:08 +05:30
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endif
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2018-10-04 20:30:24 +05:30
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2018-11-16 11:35:43 +05:30
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call h5pclose_f(plist_id, hdferr)
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if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_openFile: h5pclose_f')
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2018-10-04 20:30:24 +05:30
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end function HDF5_openFile
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2018-08-03 12:23:37 +05:30
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2018-11-15 11:37:59 +05:30
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2018-09-20 23:12:58 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-09 14:27:06 +05:30
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!> @brief close the opened HDF5 output file
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2018-09-20 23:12:58 +05:30
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_closeFile(fileHandle)
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2018-11-09 20:41:19 +05:30
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2018-09-20 23:12:58 +05:30
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implicit none
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integer :: hdferr
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integer(HID_T), intent(in) :: fileHandle
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call h5fclose_f(fileHandle,hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_closeFile: h5fclose_f',el=hdferr)
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end subroutine HDF5_closeFile
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2018-08-03 12:23:37 +05:30
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2018-09-20 23:12:58 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-09 14:27:06 +05:30
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!> @brief adds a new group to the fileHandle (additional to addGroup2)
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2018-09-20 23:12:58 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-09-28 12:11:29 +05:30
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integer(HID_T) function HDF5_addGroup2(fileHandle,groupName)
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2018-09-20 23:12:58 +05:30
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use hdf5
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implicit none
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2018-09-28 12:11:29 +05:30
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character(len=*), intent(in) :: groupName
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2018-10-11 21:30:01 +05:30
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integer(HID_T), intent(in) :: fileHandle
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2018-09-20 23:12:58 +05:30
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integer :: hdferr
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2018-11-09 20:41:19 +05:30
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2018-09-28 12:11:29 +05:30
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call h5gcreate_f(fileHandle, trim(groupName), HDF5_addGroup2, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_addGroup2: h5gcreate_f ('//trim(groupName)//')')
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2018-11-09 20:41:19 +05:30
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2018-09-20 23:12:58 +05:30
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end function HDF5_addGroup2
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2018-08-03 12:23:37 +05:30
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2018-10-04 20:30:24 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-11-09 20:41:19 +05:30
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!> @brief open an existing group of a file
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2018-10-04 20:30:24 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-11-09 20:41:19 +05:30
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integer(HID_T) function HDF5_openGroup2(FileReadID,groupName)
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2018-10-04 20:30:24 +05:30
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use hdf5
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implicit none
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2018-11-09 20:41:19 +05:30
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character(len=*), intent(in) :: groupName
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2018-10-04 20:30:24 +05:30
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integer :: hdferr
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2018-10-11 21:30:01 +05:30
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integer(HID_T), intent(in) :: FileReadID
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2018-11-09 20:41:19 +05:30
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call h5gopen_f(FileReadID, trim(groupName), HDF5_openGroup2, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_openGroup2: h5gopen_f ('//trim(groupName)//')')
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2018-10-04 20:30:24 +05:30
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end function HDF5_openGroup2
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2018-08-03 12:23:37 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-11-09 20:41:19 +05:30
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!> @brief close a group
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2018-08-03 12:23:37 +05:30
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!--------------------------------------------------------------------------------------------------
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subroutine HDF5_closeGroup(ID)
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use hdf5
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implicit none
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integer(HID_T), intent(in) :: ID
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integer :: hdferr
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call h5gclose_f(ID, hdferr)
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2018-08-03 19:46:50 +05:30
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if (hdferr < 0) call IO_error(1_pInt,ext_msg = 'HDF5_closeGroup: h5gclose_f (el is ID)', el = int(ID,pInt))
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2018-08-03 12:23:37 +05:30
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end subroutine HDF5_closeGroup
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2018-09-25 20:12:43 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-11 21:30:01 +05:30
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!> @brief subroutine for reading dataset of the type pReal with 1 dimension
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2018-10-09 18:16:57 +05:30
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!--------------------------------------------------------------------------------------------------
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2018-10-10 21:24:55 +05:30
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subroutine HDF5_read_pReal_1(dataset,loc_id,datasetName)
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2018-10-09 18:16:57 +05:30
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2018-10-10 21:24:55 +05:30
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implicit none
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2018-10-10 21:39:10 +05:30
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real(pReal), intent(out), dimension(:) :: dataset
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2018-10-10 21:24:55 +05:30
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integer(HID_T), intent(in) :: loc_id !< file or group handle
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character(len=*), intent(in) :: datasetName !< name of the dataset in the file
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integer(pInt),dimension(:), allocatable :: myShape
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integer :: hdferr
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integer(HID_T) :: dset_id
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myShape = shape(dataset)
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2018-11-09 20:41:19 +05:30
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2018-10-10 21:24:55 +05:30
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call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
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if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape1: h5dopen_f')
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call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T),hdferr)
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if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape1: h5dread_f')
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call h5dclose_f(dset_id,hdferr)
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if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape1: h5dclose_f')
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2018-10-09 18:16:57 +05:30
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2018-10-10 21:24:55 +05:30
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end subroutine HDF5_read_pReal_1
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2018-10-09 18:16:57 +05:30
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2018-10-10 21:24:55 +05:30
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!--------------------------------------------------------------------------------------------------
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!> @brief subroutine for reading dataset of the type pReal with 2 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pReal_2(dataset,loc_id,datasetName)
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape2: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape2: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape2: h5dclose_f')
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
end subroutine HDF5_read_pReal_2
|
2018-10-09 14:27:06 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
!> @brief subroutine for reading dataset of the type pReal with 3 dimensions
|
2018-10-09 14:27:06 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
subroutine HDF5_read_pReal_3(dataset,loc_id,datasetName)
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2018-10-09 18:16:57 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape3: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape3: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape3: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pReal_3
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for reading dataset of the type pReal with 4 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pReal_4(dataset,loc_id,datasetName)
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape4: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape4: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape4: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pReal_4
|
|
|
|
|
|
2018-10-09 18:16:57 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
!> @brief subroutine for reading dataset of the type pReal with 5 dimensions
|
2018-10-09 18:16:57 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
subroutine HDF5_read_pReal_5(dataset,loc_id,datasetName)
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape5: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape5: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape5: h5dclose_f')
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
end subroutine HDF5_read_pReal_5
|
2018-10-09 18:16:57 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for reading dataset of the type pReal with 6 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pReal_6(dataset,loc_id,datasetName)
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape6: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape6: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape6: h5dclose_f')
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
end subroutine HDF5_read_pReal_6
|
2018-10-09 14:27:06 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
!> @brief subroutine for reading dataset of the type pReal with 7 dimensions
|
2018-10-09 14:27:06 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
subroutine HDF5_read_pReal_7(dataset,loc_id,datasetName)
|
|
|
|
|
|
2018-10-09 14:27:06 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape7: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_DOUBLE,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape7: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pReal_shape7: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pReal_7
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-11 21:30:01 +05:30
|
|
|
!> @brief subroutine for reading dataset of the type pInt with 1 dimension
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pInt_1(dataset,loc_id,datasetName)
|
|
|
|
|
|
2018-09-25 20:12:43 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-09-25 20:12:43 +05:30
|
|
|
integer :: hdferr
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape1: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape1: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape1: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pInt_1
|
2018-09-25 20:12:43 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
!> @brief subroutine for reading dataset of the type pInt with 2 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pInt_2(dataset,loc_id,datasetName)
|
2018-09-25 20:12:43 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape2: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape2: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape2: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pInt_2
|
|
|
|
|
|
2018-09-28 12:11:29 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
!> @brief subroutine for reading dataset of the type pInt with 3 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pInt_3(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape3: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape3: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape3: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pInt_3
|
2018-09-25 20:12:43 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
!> @brief subroutine for reading dataset of the type pInt with 4 dimensions
|
2018-09-25 20:12:43 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
subroutine HDF5_read_pInt_4(dataset,loc_id,datasetName)
|
|
|
|
|
|
2018-10-05 12:26:06 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape4: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape4: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape4: h5dclose_f')
|
2018-10-05 12:26:06 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
end subroutine HDF5_read_pInt_4
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for reading dataset of the type pInt with 5 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pInt_5(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape5: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape5: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape5: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pInt_5
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for reading dataset of the type pInt with 6 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pInt_6(dataset,loc_id,datasetName)
|
|
|
|
|
|
2018-10-04 20:30:24 +05:30
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape6: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape6: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape6: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pInt_6
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for reading dataset of the type pInt with 7 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_read_pInt_7(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
integer(pInt),dimension(:), allocatable :: myShape
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-09 14:27:06 +05:30
|
|
|
integer :: hdferr
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T) :: dset_id
|
|
|
|
|
myShape = shape(dataset)
|
2018-11-09 20:41:19 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dopen_f(loc_id,datasetName,dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape7: h5dopen_f')
|
|
|
|
|
call h5dread_f(dset_id,H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T),hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape7: h5dread_f')
|
|
|
|
|
call h5dclose_f(dset_id,hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(0_pInt,ext_msg='HDF5_read_pInt__shape7: h5dclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_read_pInt_7
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
!> @brief subroutine for writing dataset of type pReal with 1 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
subroutine HDF5_write_pReal1(dataset,loc_id,datasetName,parallel)
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(pInt), dimension(:), allocatable :: &
|
|
|
|
|
globalShape, & !< shape of the dataset (all processes)
|
|
|
|
|
localShape, & !< shape of the dataset (this process)
|
|
|
|
|
outputSize !< contribution of all processes
|
|
|
|
|
integer :: hdferr,ierr
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
|
|
|
integer(HSIZE_T), dimension(1) :: myStart
|
|
|
|
|
|
|
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
! determine shape of dataset
|
|
|
|
|
localShape = shape(dataset)
|
|
|
|
|
allocate(outputSize(worldsize), source = 0_pInt)
|
|
|
|
|
outputSize(worldrank+1) = localShape(1)
|
|
|
|
|
#ifdef PETSc
|
|
|
|
|
if (present(parallel)) then; if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5pset_dxpl_mpio_f')
|
|
|
|
|
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
|
|
|
|
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal1: MPI_allreduce')
|
|
|
|
|
endif; endif
|
|
|
|
|
#endif
|
|
|
|
|
myStart = int([sum(outputSize(1:worldrank))],HSIZE_T)
|
|
|
|
|
globalShape = [localShape(1:0),sum(outputSize)]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in memory (local shape)
|
|
|
|
|
call h5screate_simple_f(size(localShape), int(localShape,HSIZE_T), memspace_id, hdferr, &
|
|
|
|
|
int(localShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5screate_simple_f/memspace_id')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in file (global shape)
|
|
|
|
|
call h5screate_simple_f(size(globalShape), int(globalShape,HSIZE_T), filespace_id, hdferr, &
|
|
|
|
|
int(globalShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5screate_simple_f/filespace_id')
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_DOUBLE, filespace_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! select a hyperslab (the portion of the current process) in the file
|
|
|
|
|
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5dget_space_f')
|
|
|
|
|
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, int(localShape,HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5sselect_hyperslab_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! write
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(globalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5dcreate_f')
|
2018-10-05 12:26:06 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-10 21:24:55 +05:30
|
|
|
!close types, dataspaces
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5pclose_f(plist_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: plist_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dclose_f(dset_id, hdferr)
|
2018-11-18 14:17:50 +05:30
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5dclose_f')
|
|
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5sclose_f/filespace_id')
|
|
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal1: h5sclose_f/memspace_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pReal1
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
!> @brief subroutine for writing dataset of type pReal with 2 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
subroutine HDF5_write_pReal2(dataset,loc_id,datasetName,parallel)
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(pInt), dimension(:), allocatable :: &
|
|
|
|
|
globalShape, & !< shape of the dataset (all processes)
|
|
|
|
|
localShape, & !< shape of the dataset (this process)
|
|
|
|
|
outputSize !< contribution of all processes
|
|
|
|
|
integer :: hdferr,ierr
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
|
|
|
integer(HSIZE_T), dimension(2) :: myStart
|
|
|
|
|
|
|
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
! determine shape of dataset
|
|
|
|
|
localShape = shape(dataset)
|
|
|
|
|
allocate(outputSize(worldsize), source = 0_pInt)
|
|
|
|
|
outputSize(worldrank+1) = localShape(2)
|
|
|
|
|
#ifdef PETSc
|
|
|
|
|
if (present(parallel)) then; if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5pset_dxpl_mpio_f')
|
|
|
|
|
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
|
|
|
|
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal2: MPI_allreduce')
|
|
|
|
|
endif; endif
|
|
|
|
|
#endif
|
|
|
|
|
myStart = int([0,sum(outputSize(1:worldrank))],HSIZE_T)
|
|
|
|
|
globalShape = [localShape(1:1),sum(outputSize)]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in memory (local shape)
|
|
|
|
|
call h5screate_simple_f(size(localShape), int(localShape,HSIZE_T), memspace_id, hdferr, &
|
|
|
|
|
int(localShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5screate_simple_f/memspace_id')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in file (global shape)
|
|
|
|
|
call h5screate_simple_f(size(globalShape), int(globalShape,HSIZE_T), filespace_id, hdferr, &
|
|
|
|
|
int(globalShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5screate_simple_f/filespace_id')
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_DOUBLE, filespace_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! select a hyperslab (the portion of the current process) in the file
|
|
|
|
|
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5dget_space_f')
|
|
|
|
|
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, int(localShape,HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5sselect_hyperslab_f')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! write
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(globalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5dcreate_f')
|
2018-10-09 14:27:06 +05:30
|
|
|
|
2018-10-05 12:26:06 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-10-09 14:27:06 +05:30
|
|
|
!close types, dataspaces
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5pclose_f(plist_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: plist_id')
|
2018-10-09 14:27:06 +05:30
|
|
|
call h5dclose_f(dset_id, hdferr)
|
2018-11-18 14:17:50 +05:30
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5dclose_f')
|
|
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5sclose_f/filespace_id')
|
|
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal2: h5sclose_f/memspace_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pReal2
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
!> @brief subroutine for writing dataset of type pReal with 3 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
subroutine HDF5_write_pReal3(dataset,loc_id,datasetName,parallel)
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(pInt), dimension(:), allocatable :: &
|
|
|
|
|
globalShape, & !< shape of the dataset (all processes)
|
|
|
|
|
localShape, & !< shape of the dataset (this process)
|
|
|
|
|
outputSize !< contribution of all processes
|
|
|
|
|
integer :: hdferr,ierr
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
|
|
|
integer(HSIZE_T), dimension(3) :: myStart
|
|
|
|
|
|
|
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
! determine shape of dataset
|
|
|
|
|
localShape = shape(dataset)
|
|
|
|
|
allocate(outputSize(worldsize), source = 0_pInt)
|
|
|
|
|
outputSize(worldrank+1) = localShape(3)
|
|
|
|
|
#ifdef PETSc
|
|
|
|
|
if (present(parallel)) then; if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5pset_dxpl_mpio_f')
|
|
|
|
|
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
|
|
|
|
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal3: MPI_allreduce')
|
|
|
|
|
endif; endif
|
|
|
|
|
#endif
|
|
|
|
|
myStart = int([0,0,sum(outputSize(1:worldrank))],HSIZE_T)
|
|
|
|
|
globalShape = [localShape(1:2),sum(outputSize)]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in memory (local shape)
|
|
|
|
|
call h5screate_simple_f(size(localShape), int(localShape,HSIZE_T), memspace_id, hdferr, &
|
|
|
|
|
int(localShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5screate_simple_f/memspace_id')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in file (global shape)
|
|
|
|
|
call h5screate_simple_f(size(globalShape), int(globalShape,HSIZE_T), filespace_id, hdferr, &
|
|
|
|
|
int(globalShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5screate_simple_f/filespace_id')
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_DOUBLE, filespace_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! select a hyperslab (the portion of the current process) in the file
|
|
|
|
|
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5dget_space_f')
|
|
|
|
|
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, int(localShape,HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5sselect_hyperslab_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! write
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(globalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5pclose_f(plist_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: plist_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dclose_f(dset_id, hdferr)
|
2018-11-18 14:17:50 +05:30
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5dclose_f')
|
|
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5sclose_f/filespace_id')
|
|
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal3: h5sclose_f/memspace_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pReal3
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
!> @brief subroutine for writing dataset of type pReal with 4 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
subroutine HDF5_write_pReal4(dataset,loc_id,datasetName,parallel)
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: &
|
|
|
|
|
globalShape, & !< shape of the dataset (all processes)
|
|
|
|
|
localShape, & !< shape of the dataset (this process)
|
|
|
|
|
outputSize !< contribution of all processes
|
|
|
|
|
integer :: hdferr,ierr
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
|
|
|
integer(HSIZE_T), dimension(4) :: myStart
|
|
|
|
|
|
|
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! determine shape of dataset
|
|
|
|
|
localShape = shape(dataset)
|
|
|
|
|
allocate(outputSize(worldsize), source = 0_pInt)
|
|
|
|
|
outputSize(worldrank+1) = localShape(4)
|
|
|
|
|
#ifdef PETSc
|
|
|
|
|
if (present(parallel)) then; if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5pset_dxpl_mpio_f')
|
|
|
|
|
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
|
|
|
|
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal4: MPI_allreduce')
|
|
|
|
|
endif; endif
|
|
|
|
|
#endif
|
|
|
|
|
myStart = int([0,0,0,sum(outputSize(1:worldrank))],HSIZE_T)
|
|
|
|
|
globalShape = [localShape(1:3),sum(outputSize)]
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
! create dataspace in memory (local shape)
|
|
|
|
|
call h5screate_simple_f(size(localShape), int(localShape,HSIZE_T), memspace_id, hdferr, &
|
|
|
|
|
int(localShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5screate_simple_f/memspace_id')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in file (global shape)
|
|
|
|
|
call h5screate_simple_f(size(globalShape), int(globalShape,HSIZE_T), filespace_id, hdferr, &
|
|
|
|
|
int(globalShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5screate_simple_f/filespace_id')
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_DOUBLE, filespace_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! select a hyperslab (the portion of the current process) in the file
|
|
|
|
|
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5dget_space_f')
|
|
|
|
|
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, int(localShape,HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5sselect_hyperslab_f')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! write
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(globalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5pclose_f(plist_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: plist_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dclose_f(dset_id, hdferr)
|
2018-11-18 14:17:50 +05:30
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5dclose_f')
|
|
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5sclose_f/filespace_id')
|
|
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal4: h5sclose_f/memspace_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pReal4
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
!> @brief subroutine for writing dataset of type pReal with 5 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
subroutine HDF5_write_pReal5(dataset,loc_id,datasetName,parallel)
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: &
|
|
|
|
|
globalShape, & !< shape of the dataset (all processes)
|
|
|
|
|
localShape, & !< shape of the dataset (this process)
|
|
|
|
|
outputSize !< contribution of all processes
|
|
|
|
|
integer :: hdferr,ierr
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
|
|
|
integer(HSIZE_T), dimension(5) :: myStart
|
|
|
|
|
|
|
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! determine shape of dataset
|
|
|
|
|
localShape = shape(dataset)
|
|
|
|
|
allocate(outputSize(worldsize), source = 0_pInt)
|
|
|
|
|
outputSize(worldrank+1) = localShape(5)
|
|
|
|
|
#ifdef PETSc
|
|
|
|
|
if (present(parallel)) then; if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5pset_dxpl_mpio_f')
|
|
|
|
|
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
|
|
|
|
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal5: MPI_allreduce')
|
|
|
|
|
endif; endif
|
|
|
|
|
#endif
|
|
|
|
|
myStart = int([0,0,0,0,sum(outputSize(1:worldrank))],HSIZE_T)
|
|
|
|
|
globalShape = [localShape(1:4),sum(outputSize)]
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
! create dataspace in memory (local shape)
|
|
|
|
|
call h5screate_simple_f(size(localShape), int(localShape,HSIZE_T), memspace_id, hdferr, &
|
|
|
|
|
int(localShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5screate_simple_f/memspace_id')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in file (global shape)
|
|
|
|
|
call h5screate_simple_f(size(globalShape), int(globalShape,HSIZE_T), filespace_id, hdferr, &
|
|
|
|
|
int(globalShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5screate_simple_f/filespace_id')
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_DOUBLE, filespace_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! select a hyperslab (the portion of the current process) in the file
|
|
|
|
|
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5dget_space_f')
|
|
|
|
|
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, int(localShape,HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5sselect_hyperslab_f')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! write
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(globalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5pclose_f(plist_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: plist_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dclose_f(dset_id, hdferr)
|
2018-11-18 14:17:50 +05:30
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5dclose_f')
|
|
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5sclose_f/filespace_id')
|
|
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal5: h5sclose_f/memspace_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pReal5
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
!> @brief subroutine for writing dataset of type pReal with 6 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
subroutine HDF5_write_pReal6(dataset,loc_id,datasetName,parallel)
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
integer(pInt), dimension(:), allocatable :: &
|
|
|
|
|
globalShape, & !< shape of the dataset (all processes)
|
|
|
|
|
localShape, & !< shape of the dataset (this process)
|
|
|
|
|
outputSize !< contribution of all processes
|
|
|
|
|
integer :: hdferr,ierr
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
|
|
|
integer(HSIZE_T), dimension(6) :: myStart
|
|
|
|
|
|
|
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
! determine shape of dataset
|
|
|
|
|
localShape = shape(dataset)
|
|
|
|
|
allocate(outputSize(worldsize), source = 0_pInt)
|
|
|
|
|
outputSize(worldrank+1) = localShape(6)
|
|
|
|
|
#ifdef PETSc
|
|
|
|
|
if (present(parallel)) then; if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5pset_dxpl_mpio_f')
|
|
|
|
|
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
|
|
|
|
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal6: MPI_allreduce')
|
|
|
|
|
endif; endif
|
|
|
|
|
#endif
|
|
|
|
|
myStart = int([0,0,0,0,0,sum(outputSize(1:worldrank))],HSIZE_T)
|
|
|
|
|
globalShape = [localShape(1:5),sum(outputSize)]
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in memory (local shape)
|
|
|
|
|
call h5screate_simple_f(size(localShape), int(localShape,HSIZE_T), memspace_id, hdferr, &
|
|
|
|
|
int(localShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5screate_simple_f/memspace_id')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in file (global shape)
|
|
|
|
|
call h5screate_simple_f(size(globalShape), int(globalShape,HSIZE_T), filespace_id, hdferr, &
|
|
|
|
|
int(globalShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5screate_simple_f/filespace_id')
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_DOUBLE, filespace_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! select a hyperslab (the portion of the current process) in the file
|
|
|
|
|
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5dget_space_f')
|
|
|
|
|
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, int(localShape,HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5sselect_hyperslab_f')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! write
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(globalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5pclose_f(plist_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: plist_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dclose_f(dset_id, hdferr)
|
2018-11-18 14:17:50 +05:30
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5dclose_f')
|
|
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5sclose_f/filespace_id')
|
|
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal6: h5sclose_f/memspace_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pReal6
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
!> @brief subroutine for writing dataset of type pReal with 7 dimensions
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
subroutine HDF5_write_pReal7(dataset,loc_id,datasetName,parallel)
|
|
|
|
|
use numerics, only: &
|
|
|
|
|
worldrank, &
|
|
|
|
|
worldsize
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
real(pReal), intent(out), dimension(:,:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
2018-11-18 14:17:50 +05:30
|
|
|
logical, intent(in), optional :: parallel
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: &
|
|
|
|
|
globalShape, & !< shape of the dataset (all processes)
|
|
|
|
|
localShape, & !< shape of the dataset (this process)
|
|
|
|
|
outputSize !< contribution of all processes
|
|
|
|
|
integer :: hdferr,ierr
|
|
|
|
|
integer(HID_T) :: dset_id, filespace_id, memspace_id, plist_id
|
|
|
|
|
integer(HSIZE_T), dimension(7) :: myStart
|
|
|
|
|
|
|
|
|
|
call h5pcreate_f(H5P_DATASET_XFER_F, plist_id, ierr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! determine shape of dataset
|
|
|
|
|
localShape = shape(dataset)
|
|
|
|
|
allocate(outputSize(worldsize), source = 0_pInt)
|
|
|
|
|
outputSize(worldrank+1) = localShape(7)
|
|
|
|
|
#ifdef PETSc
|
|
|
|
|
if (present(parallel)) then; if (parallel) then
|
|
|
|
|
call h5pset_dxpl_mpio_f(plist_id, H5FD_MPIO_COLLECTIVE_F, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5pset_dxpl_mpio_f')
|
|
|
|
|
call MPI_allreduce(MPI_IN_PLACE,outputSize,worldsize,MPI_LONG,MPI_SUM,PETSC_COMM_WORLD,ierr) ! get total output size over each process
|
|
|
|
|
if (ierr /= 0) call IO_error(894_pInt,ext_msg='HDF5_write_pReal7: MPI_allreduce')
|
|
|
|
|
endif; endif
|
|
|
|
|
#endif
|
|
|
|
|
myStart = int([0,0,0,0,0,0,sum(outputSize(1:worldrank))],HSIZE_T)
|
|
|
|
|
globalShape = [localShape(1:6),sum(outputSize)]
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
2018-11-18 14:17:50 +05:30
|
|
|
! create dataspace in memory (local shape)
|
|
|
|
|
call h5screate_simple_f(size(localShape), int(localShape,HSIZE_T), memspace_id, hdferr, &
|
|
|
|
|
int(localShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5screate_simple_f/memspace_id')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace in file (global shape)
|
|
|
|
|
call h5screate_simple_f(size(globalShape), int(globalShape,HSIZE_T), filespace_id, hdferr, &
|
|
|
|
|
int(globalShape,HSIZE_T))
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5screate_simple_f/filespace_id')
|
|
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_DOUBLE, filespace_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! select a hyperslab (the portion of the current process) in the file
|
|
|
|
|
call h5dget_space_f(dset_id, filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5dget_space_f')
|
|
|
|
|
call h5sselect_hyperslab_f(filespace_id, H5S_SELECT_SET_F, myStart, int(localShape,HSIZE_T), hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5sselect_hyperslab_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! write
|
|
|
|
|
call h5dwrite_f(dset_id, H5T_NATIVE_DOUBLE,dataset,int(globalShape,HSIZE_T), hdferr,&
|
|
|
|
|
file_space_id = filespace_id, mem_space_id = memspace_id, xfer_prp = plist_id)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5dcreate_f')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
2018-11-18 14:17:50 +05:30
|
|
|
call h5pclose_f(plist_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: plist_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
call h5dclose_f(dset_id, hdferr)
|
2018-11-18 14:17:50 +05:30
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5dclose_f')
|
|
|
|
|
call h5sclose_f(filespace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5sclose_f/filespace_id')
|
|
|
|
|
call h5sclose_f(memspace_id, hdferr)
|
|
|
|
|
if (hdferr /= 0) call IO_error(1_pInt,ext_msg='HDF5_write_pReal7: h5sclose_f/memspace_id')
|
2018-10-10 21:24:55 +05:30
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pReal7
|
|
|
|
|
|
2018-11-18 14:17:50 +05:30
|
|
|
|
2018-10-10 21:24:55 +05:30
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for writing dataset of the type pInt with 1 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_write_pInt1(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id, space_id
|
|
|
|
|
|
|
|
|
|
myShape = shape(dataset)
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace
|
|
|
|
|
call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
|
|
|
|
|
int(myShape,HSIZE_T))
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt1: h5screate_simple_f')
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
|
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt1: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T), hdferr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
|
|
|
|
call h5dclose_f(dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt1: h5dclose_f')
|
|
|
|
|
call h5sclose_f(space_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt1: h5sclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pInt1
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for writing dataset of the type pInt with 2 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_write_pInt2(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id, space_id
|
|
|
|
|
|
|
|
|
|
myShape = shape(dataset)
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace
|
|
|
|
|
call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
|
|
|
|
|
int(myShape,HSIZE_T))
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt2: h5screate_simple_f')
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
|
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt2: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T), hdferr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
|
|
|
|
call h5dclose_f(dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt2: h5dclose_f')
|
|
|
|
|
call h5sclose_f(space_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt2: h5sclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pInt2
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for writing dataset of the type pInt with 3 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_write_pInt3(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id, space_id
|
|
|
|
|
|
|
|
|
|
myShape = shape(dataset)
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace
|
|
|
|
|
call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
|
|
|
|
|
int(myShape,HSIZE_T))
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt3: h5screate_simple_f')
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
|
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt3: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T), hdferr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
|
|
|
|
call h5dclose_f(dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt3: h5dclose_f')
|
|
|
|
|
call h5sclose_f(space_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt3: h5sclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pInt3
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for writing dataset of the type pInt with 4 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_write_pInt4(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id, space_id
|
|
|
|
|
|
|
|
|
|
myShape = shape(dataset)
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace
|
|
|
|
|
call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
|
|
|
|
|
int(myShape,HSIZE_T))
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt4: h5screate_simple_f')
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
|
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt4: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T), hdferr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
|
|
|
|
call h5dclose_f(dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt4: h5dclose_f')
|
|
|
|
|
call h5sclose_f(space_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt4: h5sclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pInt4
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for writing dataset of the type pInt with 5 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_write_pInt5(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id, space_id
|
|
|
|
|
|
|
|
|
|
myShape = shape(dataset)
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace
|
|
|
|
|
call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
|
|
|
|
|
int(myShape,HSIZE_T))
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt5: h5screate_simple_f')
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
|
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt5: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T), hdferr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
|
|
|
|
call h5dclose_f(dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt5: h5dclose_f')
|
|
|
|
|
call h5sclose_f(space_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt5: h5sclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pInt5
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for writing dataset of the type pInt with 6 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_write_pInt6(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id, space_id
|
|
|
|
|
|
|
|
|
|
myShape = shape(dataset)
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace
|
|
|
|
|
call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
|
|
|
|
|
int(myShape,HSIZE_T))
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt6: h5screate_simple_f')
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
|
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt6: h5dcreate_f')
|
|
|
|
|
|
|
|
|
|
CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T), hdferr)
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!close types, dataspaces
|
|
|
|
|
call h5dclose_f(dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt6: h5dclose_f')
|
|
|
|
|
call h5sclose_f(space_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt6: h5sclose_f')
|
|
|
|
|
|
|
|
|
|
end subroutine HDF5_write_pInt6
|
|
|
|
|
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
!> @brief subroutine for writing dataset of the type pInt with 7 dimensions
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
subroutine HDF5_write_pInt7(dataset,loc_id,datasetName)
|
|
|
|
|
|
|
|
|
|
implicit none
|
2018-10-10 21:39:10 +05:30
|
|
|
integer(pInt), intent(out), dimension(:,:,:,:,:,:,:) :: dataset
|
2018-10-10 21:24:55 +05:30
|
|
|
integer(HID_T), intent(in) :: loc_id !< file or group handle
|
|
|
|
|
character(len=*), intent(in) :: datasetName !< name of the dataset in the file
|
|
|
|
|
|
|
|
|
|
integer(pInt), dimension(:), allocatable :: myShape !<shape of the dataset
|
|
|
|
|
integer :: hdferr
|
|
|
|
|
integer(HID_T) :: dset_id, space_id
|
|
|
|
|
|
|
|
|
|
myShape = shape(dataset)
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataspace
|
|
|
|
|
call h5screate_simple_f(size(myShape), int(myShape,HSIZE_T), space_id, hdferr, &
|
|
|
|
|
int(myShape,HSIZE_T))
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt7: h5screate_simple_f')
|
|
|
|
|
!--------------------------------------------------------------------------------------------------
|
|
|
|
|
! create dataset
|
|
|
|
|
call h5dcreate_f(loc_id, trim(datasetName), H5T_NATIVE_INTEGER, space_id, dset_id, hdferr)
|
|
|
|
|
if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_write_pInt7: h5dcreate_f')
|
|
|
|
|
|
|
|
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CALL h5dwrite_f(dset_id, H5T_NATIVE_INTEGER,dataset,int(myShape,HSIZE_T), hdferr)
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!--------------------------------------------------------------------------------------------------
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!close types, dataspaces
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call h5dclose_f(dset_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt7: h5dclose_f')
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call h5sclose_f(space_id, hdferr)
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if (hdferr < 0) call IO_error(1_pInt,ext_msg='HDF5_HDF5_write_pInt7: h5sclose_f')
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end subroutine HDF5_write_pInt7
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2018-08-03 12:23:37 +05:30
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2018-11-15 11:37:59 +05:30
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end module HDF5_Utilities
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