DAMASK_EICMD/processing/pre/OIMang_hex2cub.py

#!/usr/bin/env python
# -*- coding: UTF-8 no BOM -*-

import string,os,sys
from optparse import OptionParser, Option

scriptID = '$Id$'
scriptName = scriptID.split()[1]

#-------------------------------------------------------------------------------------------------
class extendableOption(Option):
#-------------------------------------------------------------------------------------------------
# used for definition of new option parser action 'extend', which enables to take multiple option arguments
# taken from online tutorial http://docs.python.org/library/optparse.html
  
  ACTIONS = Option.ACTIONS + ("extend",)
  STORE_ACTIONS = Option.STORE_ACTIONS + ("extend",)
  TYPED_ACTIONS = Option.TYPED_ACTIONS + ("extend",)
  ALWAYS_TYPED_ACTIONS = Option.ALWAYS_TYPED_ACTIONS + ("extend",)

  def take_action(self, action, dest, opt, value, values, parser):
    if action == "extend":
      lvalue = value.split(",")
      values.ensure_value(dest, []).extend(lvalue)
    else:
      Option.take_action(self, action, dest, opt, value, values, parser)

 
#--------------------------------------------------------------------------------------------------
#                                MAIN
#--------------------------------------------------------------------------------------------------
parser = OptionParser(option_class=extendableOption, usage='%prog options [file[s]]', description = """
Converts ang files (EBSD Data) from hexagonal grid to a pixel grid
""" + string.replace(scriptID,'\n','\\n')
)

parser.add_option('-x', dest='columnX', type='int', metavar='int', \
                        help='column containing x coordinates [%default]')

parser.set_defaults(columnX = 3)

(options,filenames) = parser.parse_args()

counterX  = 0
counterY  = 0
addPoints = -1                                                                                      # No of doubled points (must be the same for each odd/even line, initializing with -1 make countin easy!)

#--- setup file handles ---------------------------------------------------------------------------   
files = []
if filenames == []:
  files.append({'name':'STDIN',
                'input':sys.stdin,
                'output':sys.stdout,
                'croak':sys.stderr,
               })
 
else:
  for name in filenames:
    if os.path.exists(name):
      files.append({'name':name, 
                    'input':open(name),
                    'output':open(os.path.splitext(name)[0]+'_cub'+os.path.splitext(name)[1], 'w'),
                    'croak':sys.stdout,
                 })

#--- loop over input files ------------------------------------------------------------------------
for file in files:
  if file['name'] != 'STDIN': file['croak'].write('\033[1m'+scriptName+'\033[0m: '+file['name']+'\n')
  else: file['croak'].write('\033[1m'+scriptName+'\033[0m\n')
  x = 0
  for line in file['input']:
    lineSplit=line.split()
    
    if lineSplit[0]=='#':
      if len(lineSplit)>2:                                                                          # possibly interesting information
        if line.split()[2]=='SqrGrid': 
          file['croak'].write('The file is already a square grid file.')
          sys.exit()
        if lineSplit[1]=='XSTEP:':      stepSizeX = float(lineSplit[2]) 
        if lineSplit[1]=='YSTEP:':      stepSizeY = float(lineSplit[2])
        
        if lineSplit[2]=='HexGrid':     line='# GRID: SqrGrid\n'                                    # comments are not read by OIM, but still better to be correct
        if lineSplit[1]=='NCOLS_ODD:':
          NCols = int(int(lineSplit[2])*stepSizeX/stepSizeY)
          line='# NCOLS_ODD: %d\n'% NCols
        if lineSplit[1]=='NCOLS_EVEN:':
          line='# NCOLS_EVEN: %d\n'% NCols
          
      file['output'].write(line)
    else:                                                                                           # finished reading of header      
      xOld = x
      x = float(lineSplit[options.columnX])                                                         # current (original) x positions
      
      if x >  xOld:                                                                                 # same line, increase X
        counterX+=1
      else:                                                                                         # new line, increase in Y, reset X
        counterY+=1
        addPoints = -1                                                                              # to start at zero
        counterX=0
      
      lineFirstPart =''                                                                             # split line around x and y coordinate
      for i in xrange(options.columnX):
        lineFirstPart =lineFirstPart+' '+lineSplit[i]
      lineLastPart =''
      for i in xrange(len(lineSplit)- (options.columnX+2)):
        lineLastPart =lineLastPart+' '+lineSplit[i+options.columnX+2]
        
      if counterX+addPoints < NCols:
        file['output'].write('%s %.6f %.6f  %s\n' %(lineFirstPart,(counterX+addPoints)*stepSizeY,   # write with new x and y position 
                                                                  counterY*stepSizeY,lineLastPart))                     

      if x - (counterX+addPoints)*stepSizeY > 0.5*stepSizeY and counterX+addPoints+1 < NCols:       # double point (interpolation error)
                   
        addPoints+=1
        file['output'].write('%s %.6f %.6f  %s\n' %(lineFirstPart,(counterX+addPoints)*stepSizeY,\
                                                                   counterY*stepSizeY,lineLastPart))