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!--------------------------------------------------------------------------------------------------
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!> @author Franz Roters, Max-Planck-Institut für Eisenforschung GmbH
!> @author Philip Eisenlohr, Max-Planck-Institut für Eisenforschung GmbH
!> @author Christoph Koords, Max-Planck-Institut für Eisenforschung GmbH
!> @author Martin Diehl, Max-Planck-Institut für Eisenforschung GmbH
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!> @brief Sets up the mesh for the solvers MSC.Marc, Abaqus and the spectral solver
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!--------------------------------------------------------------------------------------------------
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module mesh
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use , intrinsic :: iso_c_binding
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use prec , only : pReal , pInt
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use mesh_base
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implicit none
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private
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integer ( pInt ) , public , protected :: &
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mesh_Nnodes , & !< total number of nodes in mesh
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mesh_Ncellnodes , & !< total number of cell nodes in mesh (including duplicates)
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mesh_Ncells , & !< total number of cells in mesh
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mesh_maxNipNeighbors , & !< max number of IP neighbors in any CP element
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mesh_maxNsharedElems !< max number of CP elements sharing a node
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integer ( pInt ) , dimension ( : ) , allocatable , private :: &
microGlobal
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integer ( pInt ) , dimension ( : ) , allocatable , private :: &
mesh_homogenizationAt
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integer ( pInt ) , dimension ( : , : ) , allocatable , public , protected :: &
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mesh_element !< entryCount and list of elements containing node
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integer ( pInt ) , dimension ( : , : , : , : ) , allocatable , public , protected :: &
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mesh_ipNeighborhood !< 6 or less neighboring IPs as [element_num, IP_index, neighbor_index that points to me]
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real ( pReal ) , public , protected :: &
mesh_unitlength !< physical length of one unit in mesh
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real ( pReal ) , dimension ( : , : ) , allocatable , public :: &
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mesh_node , & !< node x,y,z coordinates (after deformation! ONLY FOR MARC!!!)
mesh_cellnode !< cell node x,y,z coordinates (after deformation! ONLY FOR MARC!!!)
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real ( pReal ) , dimension ( : , : ) , allocatable , public , protected :: &
mesh_ipVolume , & !< volume associated with IP (initially!)
mesh_node0 !< node x,y,z coordinates (initially!)
real ( pReal ) , dimension ( : , : , : ) , allocatable , public , protected :: &
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mesh_ipArea !< area of interface to neighboring IP (initially!)
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real ( pReal ) , dimension ( : , : , : ) , allocatable , public :: &
mesh_ipCoordinates !< IP x,y,z coordinates (after deformation!)
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real ( pReal ) , dimension ( : , : , : , : ) , allocatable , public , protected :: &
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mesh_ipAreaNormal !< area normal of interface to neighboring IP (initially!)
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logical , dimension ( 3 ) , public , parameter :: mesh_periodicSurface = . true . !< flag indicating periodic outer surfaces (used for fluxes)
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integer ( pInt ) , dimension ( : , : ) , allocatable , private :: &
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mesh_cellnodeParent !< cellnode's parent element ID, cellnode's intra-element ID
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integer ( pInt ) , dimension ( : , : , : ) , allocatable , private :: &
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mesh_cell !< cell connectivity for each element,ip/cell
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integer ( pInt ) , dimension ( : , : , : ) , allocatable , private :: &
FE_cellface !< list of intra-cell cell node IDs that constitute the cell faces of a specific type of cell
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! These definitions should actually reside in the FE-solver specific part (different for MARC/ABAQUS)
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! Hence, I suggest to prefix with "FE_"
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integer ( pInt ) , parameter , private :: &
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FE_Ngeomtypes = 10_pInt , &
FE_Ncelltypes = 4_pInt , &
FE_maxNmatchingNodesPerFace = 4_pInt , &
FE_maxNfaces = 6_pInt , &
FE_maxNcellnodesPerCell = 8_pInt , &
FE_maxNcellfaces = 6_pInt , &
FE_maxNcellnodesPerCellface = 4_pInt
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integer ( pInt ) , dimension ( FE_Ncelltypes ) , parameter , private :: FE_NcellnodesPerCell = & !< number of cell nodes in a specific cell type
int ( [ &
3 , & ! (2D 3node)
4 , & ! (2D 4node)
4 , & ! (3D 4node)
8 & ! (3D 8node)
] , pInt )
integer ( pInt ) , dimension ( FE_Ncelltypes ) , parameter , private :: FE_NcellnodesPerCellface = & !< number of cell nodes per cell face in a specific cell type
int ( [ &
2 , & ! (2D 3node)
2 , & ! (2D 4node)
3 , & ! (3D 4node)
4 & ! (3D 8node)
] , pInt )
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integer ( pInt ) , dimension ( FE_Ncelltypes ) , parameter , private :: FE_NipNeighbors = & !< number of ip neighbors / cell faces in a specific cell type
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int ( [ &
3 , & ! (2D 3node)
4 , & ! (2D 4node)
4 , & ! (3D 4node)
6 & ! (3D 8node)
] , pInt )
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integer ( pInt ) , dimension ( 3 ) , public , protected :: &
grid !< (global) grid
integer ( pInt ) , public , protected :: &
mesh_NcpElemsGlobal , & !< total number of CP elements in global mesh
grid3 , & !< (local) grid in 3rd direction
grid3Offset !< (local) grid offset in 3rd direction
real ( pReal ) , dimension ( 3 ) , public , protected :: &
geomSize
real ( pReal ) , public , protected :: &
size3 , & !< (local) size in 3rd direction
size3offset !< (local) size offset in 3rd direction
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public :: &
mesh_init , &
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mesh_cellCenterCoordinates
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private :: &
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mesh_build_cellconnectivity , &
mesh_build_ipAreas , &
mesh_build_FEdata , &
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mesh_spectral_build_nodes , &
mesh_spectral_build_elements , &
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mesh_spectral_build_ipNeighborhood , &
mesh_build_cellnodes , &
mesh_build_ipCoordinates
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type , public , extends ( tMesh ) :: tMesh_grid
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integer ( pInt ) , dimension ( 3 ) , public :: &
grid !< (global) grid
integer ( pInt ) , public :: &
mesh_NcpElemsGlobal , & !< total number of CP elements in global mesh
grid3 , & !< (local) grid in 3rd direction
grid3Offset !< (local) grid offset in 3rd direction
real ( pReal ) , dimension ( 3 ) , public :: &
geomSize
real ( pReal ) , public :: &
size3 , & !< (local) size in 3rd direction
size3offset
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contains
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procedure , pass ( self ) :: tMesh_grid_init
generic , public :: init = > tMesh_grid_init
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end type tMesh_grid
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type ( tMesh_grid ) , public , protected :: theMesh
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contains
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subroutine tMesh_grid_init ( self , nodes )
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implicit none
class ( tMesh_grid ) :: self
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real ( pReal ) , dimension ( : , : ) , intent ( in ) :: nodes
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call self % tMesh % init ( 'grid' , 10_pInt , nodes )
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end subroutine tMesh_grid_init
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!--------------------------------------------------------------------------------------------------
!> @brief initializes the mesh by calling all necessary private routines the mesh module
!! Order and routines strongly depend on type of solver
!--------------------------------------------------------------------------------------------------
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subroutine mesh_init ( ip , el )
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#include <petsc/finclude/petscsys.h>
use PETScsys
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use DAMASK_interface
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use IO , only : &
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IO_error
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use debug , only : &
debug_e , &
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debug_i , &
debug_level , &
debug_mesh , &
debug_levelBasic
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use numerics , only : &
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numerics_unitlength
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use FEsolving , only : &
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FEsolving_execElem , &
FEsolving_execIP
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implicit none
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include 'fftw3-mpi.f03'
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integer ( C_INTPTR_T ) :: devNull , local_K , local_K_offset
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integer :: ierr , worldsize , i
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integer ( pInt ) , intent ( in ) , optional :: el , ip
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integer ( pInt ) :: j
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logical :: myDebug
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write ( 6 , '(/,a)' ) ' <<<+- mesh init -+>>>'
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mesh_unitlength = numerics_unitlength ! set physical extent of a length unit in mesh
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myDebug = ( iand ( debug_level ( debug_mesh ) , debug_levelBasic ) / = 0_pInt )
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call fftw_mpi_init ( )
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call mesh_spectral_read_grid ( )
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call MPI_comm_size ( PETSC_COMM_WORLD , worldsize , ierr )
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if ( ierr / = 0_pInt ) call IO_error ( 894_pInt , ext_msg = 'MPI_comm_size' )
if ( worldsize > grid ( 3 ) ) call IO_error ( 894_pInt , ext_msg = 'number of processes exceeds grid(3)' )
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devNull = fftw_mpi_local_size_3d ( int ( grid ( 3 ) , C_INTPTR_T ) , &
int ( grid ( 2 ) , C_INTPTR_T ) , &
int ( grid ( 1 ) , C_INTPTR_T ) / 2 + 1 , &
PETSC_COMM_WORLD , &
local_K , & ! domain grid size along z
local_K_offset ) ! domain grid offset along z
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grid3 = int ( local_K , pInt )
grid3Offset = int ( local_K_offset , pInt )
size3 = geomSize ( 3 ) * real ( grid3 , pReal ) / real ( grid ( 3 ) , pReal )
size3Offset = geomSize ( 3 ) * real ( grid3Offset , pReal ) / real ( grid ( 3 ) , pReal )
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mesh_NcpElemsGlobal = product ( grid )
mesh_Nnodes = product ( grid ( 1 : 2 ) + 1_pInt ) * ( grid3 + 1_pInt )
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call mesh_spectral_build_nodes ( )
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if ( myDebug ) write ( 6 , '(a)' ) ' Built nodes' ; flush ( 6 )
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call theMesh % init ( mesh_node )
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call theMesh % setNelems ( product ( grid ( 1 : 2 ) ) * grid3 )
mesh_homogenizationAt = mesh_homogenizationAt ( product ( grid ( 1 : 2 ) ) * grid3 ) ! reallocate/shrink in case of MPI
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mesh_maxNipNeighbors = theMesh % elem % nIPneighbors
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call mesh_spectral_build_elements ( )
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if ( myDebug ) write ( 6 , '(a)' ) ' Built elements' ; flush ( 6 )
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call mesh_build_FEdata ! get properties of the different types of elements
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call mesh_build_cellconnectivity
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if ( myDebug ) write ( 6 , '(a)' ) ' Built cell connectivity' ; flush ( 6 )
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mesh_cellnode = mesh_build_cellnodes ( mesh_node , mesh_Ncellnodes )
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if ( myDebug ) write ( 6 , '(a)' ) ' Built cell nodes' ; flush ( 6 )
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call mesh_build_ipCoordinates
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if ( myDebug ) write ( 6 , '(a)' ) ' Built IP coordinates' ; flush ( 6 )
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allocate ( mesh_ipVolume ( 1 , theMesh % nElems ) , source = product ( [ geomSize ( 1 : 2 ) , size3 ] / real ( [ grid ( 1 : 2 ) , grid3 ] ) ) )
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if ( myDebug ) write ( 6 , '(a)' ) ' Built IP volumes' ; flush ( 6 )
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call mesh_build_ipAreas
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if ( myDebug ) write ( 6 , '(a)' ) ' Built IP areas' ; flush ( 6 )
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call mesh_spectral_build_ipNeighborhood
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if ( myDebug ) write ( 6 , '(a)' ) ' Built IP neighborhood' ; flush ( 6 )
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if ( debug_e < 1 . or . debug_e > theMesh % nElems ) &
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call IO_error ( 602_pInt , ext_msg = 'element' ) ! selected element does not exist
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if ( debug_i < 1 . or . debug_i > theMesh % elem % nIPs ) &
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call IO_error ( 602_pInt , ext_msg = 'IP' ) ! selected element does not have requested IP
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FEsolving_execElem = [ 1_pInt , theMesh % nElems ] ! parallel loop bounds set to comprise all DAMASK elements
allocate ( FEsolving_execIP ( 2_pInt , theMesh % nElems ) , source = 1_pInt ) ! parallel loop bounds set to comprise from first IP...
forall ( j = 1_pInt : theMesh % nElems ) FEsolving_execIP ( 2 , j ) = theMesh % elem % nIPs ! ...up to own IP count for each element
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!!!! COMPATIBILITY HACK !!!!
! for a homogeneous mesh, all elements have the same number of IPs and and cell nodes.
! hence, xxPerElem instead of maxXX
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! better name
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theMesh % homogenizationAt = mesh_element ( 3 , : )
theMesh % microstructureAt = mesh_element ( 4 , : )
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!!!!!!!!!!!!!!!!!!!!!!!!
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deallocate ( mesh_cell )
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end subroutine mesh_init
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!--------------------------------------------------------------------------------------------------
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!> @brief Parses geometry file
!> @details important variables have an implicit "save" attribute. Therefore, this function is
! supposed to be called only once!
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!--------------------------------------------------------------------------------------------------
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subroutine mesh_spectral_read_grid ( )
use IO , only : &
IO_stringPos , &
IO_lc , &
IO_stringValue , &
IO_intValue , &
IO_floatValue , &
IO_error
use DAMASK_interface , only : &
geometryFile
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implicit none
character ( len = : ) , allocatable :: rawData
character ( len = 65536 ) :: line
integer ( pInt ) , allocatable , dimension ( : ) :: chunkPos
integer ( pInt ) :: h = - 1_pInt
integer ( pInt ) :: &
headerLength = - 1_pInt , & !< length of header (in lines)
fileLength , & !< length of the geom file (in characters)
fileUnit , &
startPos , endPos , &
myStat , &
l , & !< line counter
c , & !< counter for # microstructures in line
o , & !< order of "to" packing
e , & !< "element", i.e. spectral collocation point
i , j
grid = - 1_pInt
geomSize = - 1.0_pReal
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!--------------------------------------------------------------------------------------------------
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! read data as stream
inquire ( file = trim ( geometryFile ) , size = fileLength )
open ( newunit = fileUnit , file = trim ( geometryFile ) , access = 'stream' , &
status = 'old' , position = 'rewind' , action = 'read' , iostat = myStat )
if ( myStat / = 0_pInt ) call IO_error ( 100_pInt , ext_msg = trim ( geometryFile ) )
allocate ( character ( len = fileLength ) :: rawData )
read ( fileUnit ) rawData
close ( fileUnit )
!--------------------------------------------------------------------------------------------------
! get header length
endPos = index ( rawData , new_line ( '' ) )
if ( endPos < = index ( rawData , 'head' ) ) then
startPos = len ( rawData )
call IO_error ( error_ID = 841_pInt , ext_msg = 'mesh_spectral_read_grid' )
else
chunkPos = IO_stringPos ( rawData ( 1 : endPos ) )
if ( chunkPos ( 1 ) < 2_pInt ) call IO_error ( error_ID = 841_pInt , ext_msg = 'mesh_spectral_read_grid' )
headerLength = IO_intValue ( rawData ( 1 : endPos ) , chunkPos , 1_pInt )
startPos = endPos + 1_pInt
endif
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!--------------------------------------------------------------------------------------------------
! read and interprete header
l = 0
do while ( l < headerLength . and . startPos < len ( rawData ) )
endPos = startPos + index ( rawData ( startPos : ) , new_line ( '' ) ) - 1_pInt
if ( endPos < startPos ) endPos = len ( rawData ) ! end of file without new line
line = rawData ( startPos : endPos )
startPos = endPos + 1_pInt
l = l + 1_pInt
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chunkPos = IO_stringPos ( trim ( line ) )
if ( chunkPos ( 1 ) < 2 ) cycle ! need at least one keyword value pair
select case ( IO_lc ( IO_StringValue ( trim ( line ) , chunkPos , 1_pInt , . true . ) ) )
case ( 'grid' )
if ( chunkPos ( 1 ) > 6 ) then
do j = 2_pInt , 6_pInt , 2_pInt
select case ( IO_lc ( IO_stringValue ( line , chunkPos , j ) ) )
case ( 'a' )
grid ( 1 ) = IO_intValue ( line , chunkPos , j + 1_pInt )
case ( 'b' )
grid ( 2 ) = IO_intValue ( line , chunkPos , j + 1_pInt )
case ( 'c' )
grid ( 3 ) = IO_intValue ( line , chunkPos , j + 1_pInt )
end select
enddo
endif
case ( 'size' )
if ( chunkPos ( 1 ) > 6 ) then
do j = 2_pInt , 6_pInt , 2_pInt
select case ( IO_lc ( IO_stringValue ( line , chunkPos , j ) ) )
case ( 'x' )
geomSize ( 1 ) = IO_floatValue ( line , chunkPos , j + 1_pInt )
case ( 'y' )
geomSize ( 2 ) = IO_floatValue ( line , chunkPos , j + 1_pInt )
case ( 'z' )
geomSize ( 3 ) = IO_floatValue ( line , chunkPos , j + 1_pInt )
end select
enddo
endif
case ( 'homogenization' )
if ( chunkPos ( 1 ) > 1 ) h = IO_intValue ( line , chunkPos , 2_pInt )
end select
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enddo
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!--------------------------------------------------------------------------------------------------
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! sanity checks
if ( h < 1_pInt ) &
call IO_error ( error_ID = 842_pInt , ext_msg = 'homogenization (mesh_spectral_read_grid)' )
if ( any ( grid < 1_pInt ) ) &
call IO_error ( error_ID = 842_pInt , ext_msg = 'grid (mesh_spectral_read_grid)' )
if ( any ( geomSize < 0.0_pReal ) ) &
call IO_error ( error_ID = 842_pInt , ext_msg = 'size (mesh_spectral_read_grid)' )
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allocate ( microGlobal ( product ( grid ) ) , source = - 1_pInt )
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allocate ( mesh_homogenizationAt ( product ( grid ) ) , source = h ) ! too large in case of MPI (shrink later, not very elegant)
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!--------------------------------------------------------------------------------------------------
! read and interprete content
e = 1_pInt
do while ( startPos < len ( rawData ) )
endPos = startPos + index ( rawData ( startPos : ) , new_line ( '' ) ) - 1_pInt
if ( endPos < startPos ) endPos = len ( rawData ) ! end of file without new line
line = rawData ( startPos : endPos )
startPos = endPos + 1_pInt
l = l + 1_pInt
chunkPos = IO_stringPos ( trim ( line ) )
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noCompression : if ( chunkPos ( 1 ) / = 3 ) then
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c = chunkPos ( 1 )
microGlobal ( e : e + c - 1_pInt ) = [ ( IO_intValue ( line , chunkPos , i + 1_pInt ) , i = 0_pInt , c - 1_pInt ) ]
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else noCompression
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compression : if ( IO_lc ( IO_stringValue ( line , chunkPos , 2 ) ) == 'of' ) then
c = IO_intValue ( line , chunkPos , 1 )
microGlobal ( e : e + c - 1_pInt ) = [ ( IO_intValue ( line , chunkPos , 3 ) , i = 1_pInt , IO_intValue ( line , chunkPos , 1 ) ) ]
else if ( IO_lc ( IO_stringValue ( line , chunkPos , 2 ) ) == 'to' ) then compression
c = abs ( IO_intValue ( line , chunkPos , 3 ) - IO_intValue ( line , chunkPos , 1 ) ) + 1_pInt
o = merge ( + 1_pInt , - 1_pInt , IO_intValue ( line , chunkPos , 3 ) > IO_intValue ( line , chunkPos , 1 ) )
microGlobal ( e : e + c - 1_pInt ) = [ ( i , i = IO_intValue ( line , chunkPos , 1 ) , IO_intValue ( line , chunkPos , 3 ) , o ) ]
else compression
c = chunkPos ( 1 )
microGlobal ( e : e + c - 1_pInt ) = [ ( IO_intValue ( line , chunkPos , i + 1_pInt ) , i = 0_pInt , c - 1_pInt ) ]
endif compression
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endif noCompression
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e = e + c
end do
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if ( e - 1 / = product ( grid ) ) call IO_error ( error_ID = 843_pInt , el = e )
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end subroutine mesh_spectral_read_grid
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!--------------------------------------------------------------------------------------------------
!> @brief Store x,y,z coordinates of all nodes in mesh.
!! Allocates global arrays 'mesh_node0' and 'mesh_node'
!--------------------------------------------------------------------------------------------------
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subroutine mesh_spectral_build_nodes ( )
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implicit none
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integer ( pInt ) :: n
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allocate ( mesh_node0 ( 3 , mesh_Nnodes ) , source = 0.0_pReal )
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forall ( n = 0_pInt : mesh_Nnodes - 1_pInt )
mesh_node0 ( 1 , n + 1_pInt ) = mesh_unitlength * &
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geomSize ( 1 ) * real ( mod ( n , ( grid ( 1 ) + 1_pInt ) ) , pReal ) &
/ real ( grid ( 1 ) , pReal )
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mesh_node0 ( 2 , n + 1_pInt ) = mesh_unitlength * &
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geomSize ( 2 ) * real ( mod ( n / ( grid ( 1 ) + 1_pInt ) , ( grid ( 2 ) + 1_pInt ) ) , pReal ) &
/ real ( grid ( 2 ) , pReal )
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mesh_node0 ( 3 , n + 1_pInt ) = mesh_unitlength * &
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size3 * real ( mod ( n / ( grid ( 1 ) + 1_pInt ) / ( grid ( 2 ) + 1_pInt ) , ( grid3 + 1_pInt ) ) , pReal ) &
/ real ( grid3 , pReal ) + &
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size3offset
end forall
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mesh_node = mesh_node0
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end subroutine mesh_spectral_build_nodes
!--------------------------------------------------------------------------------------------------
!> @brief Store FEid, type, material, texture, and node list per element.
!! Allocates global array 'mesh_element'
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!> @todo does the IO_error makes sense?
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!--------------------------------------------------------------------------------------------------
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subroutine mesh_spectral_build_elements ( )
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use IO , only : &
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IO_error
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implicit none
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integer ( pInt ) :: &
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e , &
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elemOffset
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allocate ( mesh_element ( 4_pInt + 8_pInt , theMesh % nElems ) , source = 0_pInt )
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elemOffset = product ( grid ( 1 : 2 ) ) * grid3Offset
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e = 0_pInt
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do while ( e < theMesh % nElems ) ! fill expected number of elements, stop at end of data
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e = e + 1_pInt ! valid element entry
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mesh_element ( 1 , e ) = - 1_pInt ! DEPRECATED
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mesh_element ( 2 , e ) = 10_pInt
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mesh_element ( 3 , e ) = mesh_homogenizationAt ( e )
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mesh_element ( 4 , e ) = microGlobal ( e + elemOffset ) ! microstructure
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mesh_element ( 5 , e ) = e + ( e - 1_pInt ) / grid ( 1 ) + &
( ( e - 1_pInt ) / ( grid ( 1 ) * grid ( 2 ) ) ) * ( grid ( 1 ) + 1_pInt ) ! base node
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mesh_element ( 6 , e ) = mesh_element ( 5 , e ) + 1_pInt
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mesh_element ( 7 , e ) = mesh_element ( 5 , e ) + grid ( 1 ) + 2_pInt
mesh_element ( 8 , e ) = mesh_element ( 5 , e ) + grid ( 1 ) + 1_pInt
mesh_element ( 9 , e ) = mesh_element ( 5 , e ) + ( grid ( 1 ) + 1_pInt ) * ( grid ( 2 ) + 1_pInt ) ! second floor base node
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mesh_element ( 10 , e ) = mesh_element ( 9 , e ) + 1_pInt
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mesh_element ( 11 , e ) = mesh_element ( 9 , e ) + grid ( 1 ) + 2_pInt
mesh_element ( 12 , e ) = mesh_element ( 9 , e ) + grid ( 1 ) + 1_pInt
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enddo
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if ( e / = theMesh % nElems ) call IO_error ( 880_pInt , e )
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end subroutine mesh_spectral_build_elements
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!--------------------------------------------------------------------------------------------------
!> @brief build neighborhood relations for spectral
!> @details assign globals: mesh_ipNeighborhood
!--------------------------------------------------------------------------------------------------
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subroutine mesh_spectral_build_ipNeighborhood
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implicit none
integer ( pInt ) :: &
x , y , z , &
e
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allocate ( mesh_ipNeighborhood ( 3 , 6 , 1 , theMesh % nElems ) , source = 0_pInt )
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e = 0_pInt
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do z = 0_pInt , grid3 - 1_pInt
do y = 0_pInt , grid ( 2 ) - 1_pInt
do x = 0_pInt , grid ( 1 ) - 1_pInt
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e = e + 1_pInt
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mesh_ipNeighborhood ( 1 , 1 , 1 , e ) = z * grid ( 1 ) * grid ( 2 ) &
+ y * grid ( 1 ) &
+ modulo ( x + 1_pInt , grid ( 1 ) ) &
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+ 1_pInt
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mesh_ipNeighborhood ( 1 , 2 , 1 , e ) = z * grid ( 1 ) * grid ( 2 ) &
+ y * grid ( 1 ) &
+ modulo ( x - 1_pInt , grid ( 1 ) ) &
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+ 1_pInt
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mesh_ipNeighborhood ( 1 , 3 , 1 , e ) = z * grid ( 1 ) * grid ( 2 ) &
+ modulo ( y + 1_pInt , grid ( 2 ) ) * grid ( 1 ) &
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+ x &
+ 1_pInt
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mesh_ipNeighborhood ( 1 , 4 , 1 , e ) = z * grid ( 1 ) * grid ( 2 ) &
+ modulo ( y - 1_pInt , grid ( 2 ) ) * grid ( 1 ) &
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+ x &
+ 1_pInt
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mesh_ipNeighborhood ( 1 , 5 , 1 , e ) = modulo ( z + 1_pInt , grid3 ) * grid ( 1 ) * grid ( 2 ) &
+ y * grid ( 1 ) &
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+ x &
+ 1_pInt
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mesh_ipNeighborhood ( 1 , 6 , 1 , e ) = modulo ( z - 1_pInt , grid3 ) * grid ( 1 ) * grid ( 2 ) &
+ y * grid ( 1 ) &
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+ x &
+ 1_pInt
mesh_ipNeighborhood ( 2 , 1 : 6 , 1 , e ) = 1_pInt
mesh_ipNeighborhood ( 3 , 1 , 1 , e ) = 2_pInt
mesh_ipNeighborhood ( 3 , 2 , 1 , e ) = 1_pInt
mesh_ipNeighborhood ( 3 , 3 , 1 , e ) = 4_pInt
mesh_ipNeighborhood ( 3 , 4 , 1 , e ) = 3_pInt
mesh_ipNeighborhood ( 3 , 5 , 1 , e ) = 6_pInt
mesh_ipNeighborhood ( 3 , 6 , 1 , e ) = 5_pInt
enddo
enddo
enddo
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end subroutine mesh_spectral_build_ipNeighborhood
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!--------------------------------------------------------------------------------------------------
!> @brief builds mesh of (distorted) cubes for given coordinates (= center of the cubes)
!--------------------------------------------------------------------------------------------------
function mesh_nodesAroundCentres ( gDim , Favg , centres ) result ( nodes )
use debug , only : &
debug_mesh , &
debug_level , &
debug_levelBasic
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implicit none
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real ( pReal ) , intent ( in ) , dimension ( : , : , : , : ) :: &
centres
real ( pReal ) , dimension ( 3 , size ( centres , 2 ) + 1 , size ( centres , 3 ) + 1 , size ( centres , 4 ) + 1 ) :: &
nodes
real ( pReal ) , intent ( in ) , dimension ( 3 ) :: &
gDim
real ( pReal ) , intent ( in ) , dimension ( 3 , 3 ) :: &
Favg
real ( pReal ) , dimension ( 3 , size ( centres , 2 ) + 2 , size ( centres , 3 ) + 2 , size ( centres , 4 ) + 2 ) :: &
wrappedCentres
integer ( pInt ) :: &
i , j , k , n
integer ( pInt ) , dimension ( 3 ) , parameter :: &
diag = 1_pInt
integer ( pInt ) , dimension ( 3 ) :: &
shift = 0_pInt , &
lookup = 0_pInt , &
me = 0_pInt , &
iRes = 0_pInt
integer ( pInt ) , dimension ( 3 , 8 ) :: &
neighbor = reshape ( [ &
0_pInt , 0_pInt , 0_pInt , &
1_pInt , 0_pInt , 0_pInt , &
1_pInt , 1_pInt , 0_pInt , &
0_pInt , 1_pInt , 0_pInt , &
0_pInt , 0_pInt , 1_pInt , &
1_pInt , 0_pInt , 1_pInt , &
1_pInt , 1_pInt , 1_pInt , &
0_pInt , 1_pInt , 1_pInt ] , [ 3 , 8 ] )
!--------------------------------------------------------------------------------------------------
! initializing variables
iRes = [ size ( centres , 2 ) , size ( centres , 3 ) , size ( centres , 4 ) ]
nodes = 0.0_pReal
wrappedCentres = 0.0_pReal
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!--------------------------------------------------------------------------------------------------
! report
if ( iand ( debug_level ( debug_mesh ) , debug_levelBasic ) / = 0_pInt ) then
write ( 6 , '(a)' ) ' Meshing cubes around centroids'
write ( 6 , '(a,3(e12.5))' ) ' Dimension: ' , gDim
write ( 6 , '(a,3(i5))' ) ' Resolution:' , iRes
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endif
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!--------------------------------------------------------------------------------------------------
! building wrappedCentres = centroids + ghosts
wrappedCentres ( 1 : 3 , 2_pInt : iRes ( 1 ) + 1_pInt , 2_pInt : iRes ( 2 ) + 1_pInt , 2_pInt : iRes ( 3 ) + 1_pInt ) = centres
do k = 0_pInt , iRes ( 3 ) + 1_pInt
do j = 0_pInt , iRes ( 2 ) + 1_pInt
do i = 0_pInt , iRes ( 1 ) + 1_pInt
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if ( k == 0_pInt . or . k == iRes ( 3 ) + 1_pInt . or . & ! z skin
j == 0_pInt . or . j == iRes ( 2 ) + 1_pInt . or . & ! y skin
i == 0_pInt . or . i == iRes ( 1 ) + 1_pInt ) then ! x skin
me = [ i , j , k ] ! me on skin
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shift = sign ( abs ( iRes + diag - 2_pInt * me ) / ( iRes + diag ) , iRes + diag - 2_pInt * me )
lookup = me - diag + shift * iRes
wrappedCentres ( 1 : 3 , i + 1_pInt , j + 1_pInt , k + 1_pInt ) = &
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centres ( 1 : 3 , lookup ( 1 ) + 1_pInt , lookup ( 2 ) + 1_pInt , lookup ( 3 ) + 1_pInt ) &
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- matmul ( Favg , real ( shift , pReal ) * gDim )
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endif
enddo ; enddo ; enddo
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!--------------------------------------------------------------------------------------------------
! averaging
do k = 0_pInt , iRes ( 3 ) ; do j = 0_pInt , iRes ( 2 ) ; do i = 0_pInt , iRes ( 1 )
do n = 1_pInt , 8_pInt
nodes ( 1 : 3 , i + 1_pInt , j + 1_pInt , k + 1_pInt ) = &
nodes ( 1 : 3 , i + 1_pInt , j + 1_pInt , k + 1_pInt ) + wrappedCentres ( 1 : 3 , i + 1_pInt + neighbor ( 1 , n ) , &
j + 1_pInt + neighbor ( 2 , n ) , &
k + 1_pInt + neighbor ( 3 , n ) )
enddo
enddo ; enddo ; enddo
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nodes = nodes / 8.0_pReal
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end function mesh_nodesAroundCentres
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!#################################################################################################################
!#################################################################################################################
!#################################################################################################################
! The following routines are not solver specific and should be included in mesh_base (most likely in modified form)
!#################################################################################################################
!#################################################################################################################
!#################################################################################################################
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!--------------------------------------------------------------------------------------------------
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!> @brief Split CP elements into cells.
!> @details Build a mapping between cells and the corresponding cell nodes ('mesh_cell').
!> Cell nodes that are also matching nodes are unique in the list of cell nodes,
!> all others (currently) might be stored more than once.
!> Also allocates the 'mesh_node' array.
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!--------------------------------------------------------------------------------------------------
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subroutine mesh_build_cellconnectivity
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implicit none
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integer ( pInt ) , dimension ( : ) , allocatable :: &
matchingNode2cellnode
integer ( pInt ) , dimension ( : , : ) , allocatable :: &
cellnodeParent
integer ( pInt ) , dimension ( theMesh % elem % Ncellnodes ) :: &
localCellnode2globalCellnode
integer ( pInt ) :: &
e , n , i , &
matchingNodeID , &
localCellnodeID
integer ( pInt ) , dimension ( FE_Ngeomtypes ) , parameter :: FE_NmatchingNodes = & !< number of nodes that are needed for face matching in a specific type of element geometry
int ( [ &
3 , & ! element 6 (2D 3node 1ip)
3 , & ! element 125 (2D 6node 3ip)
4 , & ! element 11 (2D 4node 4ip)
4 , & ! element 27 (2D 8node 9ip)
4 , & ! element 134 (3D 4node 1ip)
4 , & ! element 127 (3D 10node 4ip)
6 , & ! element 136 (3D 6node 6ip)
8 , & ! element 117 (3D 8node 1ip)
8 , & ! element 7 (3D 8node 8ip)
8 & ! element 21 (3D 20node 27ip)
] , pInt )
allocate ( mesh_cell ( FE_maxNcellnodesPerCell , theMesh % elem % nIPs , theMesh % nElems ) , source = 0_pInt )
allocate ( matchingNode2cellnode ( theMesh % nNodes ) , source = 0_pInt )
allocate ( cellnodeParent ( 2_pInt , theMesh % elem % Ncellnodes * theMesh % nElems ) , source = 0_pInt )
mesh_Ncells = theMesh % nElems * theMesh % elem % nIPs
!--------------------------------------------------------------------------------------------------
! Count cell nodes (including duplicates) and generate cell connectivity list
mesh_Ncellnodes = 0_pInt
do e = 1_pInt , theMesh % nElems
localCellnode2globalCellnode = 0_pInt
do i = 1_pInt , theMesh % elem % nIPs
do n = 1_pInt , theMesh % elem % NcellnodesPerCell
localCellnodeID = theMesh % elem % cell ( n , i )
if ( localCellnodeID < = FE_NmatchingNodes ( theMesh % elem % geomType ) ) then ! this cell node is a matching node
matchingNodeID = mesh_element ( 4_pInt + localCellnodeID , e )
if ( matchingNode2cellnode ( matchingNodeID ) == 0_pInt ) then ! if this matching node does not yet exist in the glbal cell node list ...
mesh_Ncellnodes = mesh_Ncellnodes + 1_pInt ! ... count it as cell node ...
matchingNode2cellnode ( matchingNodeID ) = mesh_Ncellnodes ! ... and remember its global ID
cellnodeParent ( 1_pInt , mesh_Ncellnodes ) = e ! ... and where it belongs to
cellnodeParent ( 2_pInt , mesh_Ncellnodes ) = localCellnodeID
endif
mesh_cell ( n , i , e ) = matchingNode2cellnode ( matchingNodeID )
else ! this cell node is no matching node
if ( localCellnode2globalCellnode ( localCellnodeID ) == 0_pInt ) then ! if this local cell node does not yet exist in the global cell node list ...
mesh_Ncellnodes = mesh_Ncellnodes + 1_pInt ! ... count it as cell node ...
localCellnode2globalCellnode ( localCellnodeID ) = mesh_Ncellnodes ! ... and remember its global ID ...
cellnodeParent ( 1_pInt , mesh_Ncellnodes ) = e ! ... and it belongs to
cellnodeParent ( 2_pInt , mesh_Ncellnodes ) = localCellnodeID
endif
mesh_cell ( n , i , e ) = localCellnode2globalCellnode ( localCellnodeID )
endif
enddo
enddo
enddo
allocate ( mesh_cellnodeParent ( 2_pInt , mesh_Ncellnodes ) )
allocate ( mesh_cellnode ( 3_pInt , mesh_Ncellnodes ) )
forall ( n = 1_pInt : mesh_Ncellnodes )
mesh_cellnodeParent ( 1 , n ) = cellnodeParent ( 1 , n )
mesh_cellnodeParent ( 2 , n ) = cellnodeParent ( 2 , n )
endforall
end subroutine mesh_build_cellconnectivity
!--------------------------------------------------------------------------------------------------
!> @brief Calculate position of cellnodes from the given position of nodes
!> Build list of cellnodes' coordinates.
!> Cellnode coordinates are calculated from a weighted sum of node coordinates.
!--------------------------------------------------------------------------------------------------
function mesh_build_cellnodes ( nodes , Ncellnodes )
implicit none
integer ( pInt ) , intent ( in ) :: Ncellnodes !< requested number of cellnodes
real ( pReal ) , dimension ( 3 , mesh_Nnodes ) , intent ( in ) :: nodes
real ( pReal ) , dimension ( 3 , Ncellnodes ) :: mesh_build_cellnodes
integer ( pInt ) :: &
e , n , m , &
localCellnodeID
real ( pReal ) , dimension ( 3 ) :: &
myCoords
mesh_build_cellnodes = 0.0_pReal
!$OMP PARALLEL DO PRIVATE(e,localCellnodeID,myCoords)
do n = 1_pInt , Ncellnodes ! loop over cell nodes
e = mesh_cellnodeParent ( 1 , n )
localCellnodeID = mesh_cellnodeParent ( 2 , n )
myCoords = 0.0_pReal
do m = 1_pInt , theMesh % elem % nNodes
myCoords = myCoords + nodes ( 1 : 3 , mesh_element ( 4_pInt + m , e ) ) &
* theMesh % elem % cellNodeParentNodeWeights ( m , localCellnodeID )
enddo
mesh_build_cellnodes ( 1 : 3 , n ) = myCoords / sum ( theMesh % elem % cellNodeParentNodeWeights ( : , localCellnodeID ) )
enddo
!$OMP END PARALLEL DO
end function mesh_build_cellnodes
!--------------------------------------------------------------------------------------------------
!> @brief Calculates IP Coordinates. Allocates global array 'mesh_ipCoordinates'
! Called by all solvers in mesh_init in order to initialize the ip coordinates.
! Later on the current ip coordinates are directly prvided by the spectral solver and by Abaqus,
! so no need to use this subroutine anymore; Marc however only provides nodal displacements,
! so in this case the ip coordinates are always calculated on the basis of this subroutine.
! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! FOR THE MOMENT THIS SUBROUTINE ACTUALLY CALCULATES THE CELL CENTER AND NOT THE IP COORDINATES,
! AS THE IP IS NOT (ALWAYS) LOCATED IN THE CENTER OF THE IP VOLUME.
! HAS TO BE CHANGED IN A LATER VERSION.
! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
!--------------------------------------------------------------------------------------------------
subroutine mesh_build_ipCoordinates
implicit none
integer ( pInt ) :: e , c , i , n
real ( pReal ) , dimension ( 3 ) :: myCoords
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allocate ( mesh_ipCoordinates ( 3 , theMesh % elem % nIPs , theMesh % nElems ) , source = 0.0_pReal )
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!$OMP PARALLEL DO PRIVATE(c,myCoords)
do e = 1_pInt , theMesh % nElems ! loop over cpElems
c = theMesh % elem % cellType
do i = 1_pInt , theMesh % elem % nIPs ! loop over ips=cells in this element
myCoords = 0.0_pReal
do n = 1_pInt , FE_NcellnodesPerCell ( c ) ! loop over cell nodes in this cell
myCoords = myCoords + mesh_cellnode ( 1 : 3 , mesh_cell ( n , i , e ) )
enddo
mesh_ipCoordinates ( 1 : 3 , i , e ) = myCoords / real ( FE_NcellnodesPerCell ( c ) , pReal )
enddo
enddo
!$OMP END PARALLEL DO
end subroutine mesh_build_ipCoordinates
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!--------------------------------------------------------------------------------------------------
!> @brief Calculates cell center coordinates.
!--------------------------------------------------------------------------------------------------
pure function mesh_cellCenterCoordinates ( ip , el )
implicit none
integer ( pInt ) , intent ( in ) :: el , & !< element number
ip !< integration point number
real ( pReal ) , dimension ( 3 ) :: mesh_cellCenterCoordinates !< x,y,z coordinates of the cell center of the requested IP cell
integer ( pInt ) :: c , n
c = theMesh % elem % cellType
mesh_cellCenterCoordinates = 0.0_pReal
do n = 1_pInt , FE_NcellnodesPerCell ( c ) ! loop over cell nodes in this cell
mesh_cellCenterCoordinates = mesh_cellCenterCoordinates + mesh_cellnode ( 1 : 3 , mesh_cell ( n , ip , el ) )
enddo
mesh_cellCenterCoordinates = mesh_cellCenterCoordinates / real ( FE_NcellnodesPerCell ( c ) , pReal )
end function mesh_cellCenterCoordinates
!--------------------------------------------------------------------------------------------------
!> @brief calculation of IP interface areas, allocate globals '_ipArea', and '_ipAreaNormal'
!--------------------------------------------------------------------------------------------------
subroutine mesh_build_ipAreas
use math , only : &
math_crossproduct
implicit none
integer ( pInt ) :: e , t , g , c , i , f , n , m
real ( pReal ) , dimension ( 3 , FE_maxNcellnodesPerCellface ) :: nodePos , normals
real ( pReal ) , dimension ( 3 ) :: normal
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allocate ( mesh_ipArea ( theMesh % elem % nIPneighbors , theMesh % elem % nIPs , theMesh % nElems ) , source = 0.0_pReal )
allocate ( mesh_ipAreaNormal ( 3_pInt , theMesh % elem % nIPneighbors , theMesh % elem % nIPs , theMesh % nElems ) , source = 0.0_pReal )
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!$OMP PARALLEL DO PRIVATE(t,g,c,nodePos,normal,normals)
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do e = 1_pInt , theMesh % nElems ! loop over cpElems
c = theMesh % elem % cellType
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select case ( c )
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case ( 1_pInt , 2_pInt ) ! 2D 3 or 4 node
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do i = 1_pInt , theMesh % elem % nIPs ! loop over ips=cells in this element
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do f = 1_pInt , FE_NipNeighbors ( c ) ! loop over cell faces
forall ( n = 1_pInt : FE_NcellnodesPerCellface ( c ) ) &
nodePos ( 1 : 3 , n ) = mesh_cellnode ( 1 : 3 , mesh_cell ( FE_cellface ( n , f , c ) , i , e ) )
normal ( 1 ) = nodePos ( 2 , 2 ) - nodePos ( 2 , 1 ) ! x_normal = y_connectingVector
normal ( 2 ) = - ( nodePos ( 1 , 2 ) - nodePos ( 1 , 1 ) ) ! y_normal = -x_connectingVector
normal ( 3 ) = 0.0_pReal
mesh_ipArea ( f , i , e ) = norm2 ( normal )
mesh_ipAreaNormal ( 1 : 3 , f , i , e ) = normal / norm2 ( normal ) ! ensure unit length of area normal
enddo
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enddo
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case ( 3_pInt ) ! 3D 4node
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do i = 1_pInt , theMesh % elem % nIPs ! loop over ips=cells in this element
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do f = 1_pInt , FE_NipNeighbors ( c ) ! loop over cell faces
forall ( n = 1_pInt : FE_NcellnodesPerCellface ( c ) ) &
nodePos ( 1 : 3 , n ) = mesh_cellnode ( 1 : 3 , mesh_cell ( FE_cellface ( n , f , c ) , i , e ) )
normal = math_crossproduct ( nodePos ( 1 : 3 , 2 ) - nodePos ( 1 : 3 , 1 ) , &
nodePos ( 1 : 3 , 3 ) - nodePos ( 1 : 3 , 1 ) )
mesh_ipArea ( f , i , e ) = norm2 ( normal )
mesh_ipAreaNormal ( 1 : 3 , f , i , e ) = normal / norm2 ( normal ) ! ensure unit length of area normal
enddo
enddo
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case ( 4_pInt ) ! 3D 8node
! for this cell type we get the normal of the quadrilateral face as an average of
! four normals of triangular subfaces; since the face consists only of two triangles,
! the sum has to be divided by two; this whole prcedure tries to compensate for
! probable non-planar cell surfaces
m = FE_NcellnodesPerCellface ( c )
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do i = 1_pInt , theMesh % elem % nIPs ! loop over ips=cells in this element
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do f = 1_pInt , FE_NipNeighbors ( c ) ! loop over cell faces
forall ( n = 1_pInt : FE_NcellnodesPerCellface ( c ) ) &
nodePos ( 1 : 3 , n ) = mesh_cellnode ( 1 : 3 , mesh_cell ( FE_cellface ( n , f , c ) , i , e ) )
forall ( n = 1_pInt : FE_NcellnodesPerCellface ( c ) ) &
normals ( 1 : 3 , n ) = 0.5_pReal &
* math_crossproduct ( nodePos ( 1 : 3 , 1 + mod ( n , m ) ) - nodePos ( 1 : 3 , n ) , &
nodePos ( 1 : 3 , 1 + mod ( n + 1 , m ) ) - nodePos ( 1 : 3 , n ) )
normal = 0.5_pReal * sum ( normals , 2 )
mesh_ipArea ( f , i , e ) = norm2 ( normal )
mesh_ipAreaNormal ( 1 : 3 , f , i , e ) = normal / norm2 ( normal )
enddo
enddo
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end select
enddo
!$OMP END PARALLEL DO
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end subroutine mesh_build_ipAreas
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!--------------------------------------------------------------------------------------------------
!> @brief get properties of different types of finite elements
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!> @details assign globals: FE_nodesAtIP, FE_ipNeighbor, FE_subNodeOnIPFace
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!--------------------------------------------------------------------------------------------------
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subroutine mesh_build_FEdata
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implicit none
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integer ( pInt ) :: me
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allocate ( FE_cellface ( FE_maxNcellnodesPerCellface , FE_maxNcellfaces , FE_Ncelltypes ) , source = 0_pInt )
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! *** FE_cellface ***
me = 0_pInt
me = me + 1_pInt
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FE_cellface ( 1 : FE_NcellnodesPerCellface ( me ) , 1 : FE_NipNeighbors ( me ) , me ) = & ! 2D 3node, VTK_TRIANGLE (5)
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reshape ( int ( [ &
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2 , 3 , &
3 , 1 , &
1 , 2 &
] , pInt ) , [ FE_NcellnodesPerCellface ( me ) , FE_NipNeighbors ( me ) ] )
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me = me + 1_pInt
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FE_cellface ( 1 : FE_NcellnodesPerCellface ( me ) , 1 : FE_NipNeighbors ( me ) , me ) = & ! 2D 4node, VTK_QUAD (9)
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reshape ( int ( [ &
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2 , 3 , &
4 , 1 , &
3 , 4 , &
1 , 2 &
] , pInt ) , [ FE_NcellnodesPerCellface ( me ) , FE_NipNeighbors ( me ) ] )
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me = me + 1_pInt
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FE_cellface ( 1 : FE_NcellnodesPerCellface ( me ) , 1 : FE_NipNeighbors ( me ) , me ) = & ! 3D 4node, VTK_TETRA (10)
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reshape ( int ( [ &
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1 , 3 , 2 , &
1 , 2 , 4 , &
2 , 3 , 4 , &
1 , 4 , 3 &
] , pInt ) , [ FE_NcellnodesPerCellface ( me ) , FE_NipNeighbors ( me ) ] )
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me = me + 1_pInt
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FE_cellface ( 1 : FE_NcellnodesPerCellface ( me ) , 1 : FE_NipNeighbors ( me ) , me ) = & ! 3D 8node, VTK_HEXAHEDRON (12)
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reshape ( int ( [ &
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2 , 3 , 7 , 6 , &
4 , 1 , 5 , 8 , &
3 , 4 , 8 , 7 , &
1 , 2 , 6 , 5 , &
5 , 6 , 7 , 8 , &
1 , 4 , 3 , 2 &
] , pInt ) , [ FE_NcellnodesPerCellface ( me ) , FE_NipNeighbors ( me ) ] )
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end subroutine mesh_build_FEdata
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end module mesh