6ba76c3832
introduced public line object holding currently read data line as string.
...
label_append now has option to overwrite (reset=True) labels that were read originally.
data_writeArray maintains full significant digit representation as default.
2015-08-20 19:38:06 +00:00
22c52fbd32
cleaned core module
2015-08-12 18:48:09 +00:00
93dd9f5c09
bug fix regarding self.tmpext.
...
added check for access rights when overwriting original file.
2015-08-12 18:41:44 +00:00
a29240242b
standard name for numpy is np
2015-08-12 18:32:28 +00:00
64515d7aca
simplified interface:
...
name == None: read from stdin
outname == None and not readonly mode: do in-place substitution of name (with transparent file renaming upon table.close)
2015-08-12 17:42:38 +00:00
f9348398ce
removed old file, added possibility to normalise euler angels to standard range, added svn properties
2015-08-12 15:15:33 +00:00
35863e0229
fixed averageDown and made it's test running
2015-08-12 13:43:05 +00:00
36caddcc24
adjusted to new ASCII table file handling
2015-08-12 12:51:47 +00:00
3991813595
fix syntax error regarding several static method
2015-08-10 21:08:00 +00:00
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
dfe0991134
adding property alias for Orientation class to simplify syntax.
2015-08-04 20:38:06 +00:00
1ec3639cf1
use pure python implementation of orientation class as default
2015-08-02 17:49:38 +00:00
fbb7f9b11b
remove deprecated function from math.f90
2015-07-29 20:49:42 +00:00
9287d6f15f
make the interface for Symmetry class compatible with pure python version.
2015-07-29 19:39:30 +00:00
5f74f3e95e
add Cython version of orientation module to provide faster orientation calculation.
2015-07-29 19:23:06 +00:00
70606770d0
correct two typos in Quaternion class
2015-07-28 20:10:27 +00:00
bfedf037c6
add asAngleAxis() to Orientation class
2015-07-22 21:49:24 +00:00
08f4495721
changed readArray default behavior to reading always scalars when columns are referenced by number
2015-07-21 20:44:40 +00:00
c46e639a38
fixed bug preventing first line to be read when using readArray without labels.
2015-07-09 03:40:15 +00:00
5fe65bfcc3
corrected OR models and set up simple test to check them
2015-06-29 16:02:56 +00:00
50bcfe6e0d
possibility to give fixed seed to random orientation
2015-06-26 06:32:25 +00:00
6aaf074651
bug fix
2015-06-25 16:16:01 +00:00
f10dfa311a
fixed ORs
2015-06-25 12:00:08 +00:00
2d8af638b0
added optional keyword `degrees´ to q.asEulers().
...
added methods inFZ, equivalentQuaternions, and equivalentOrientations to Orientation class.
general polishing…
2015-06-21 12:05:17 +00:00
16edd1693d
now only trying to close input and output tables.
...
corrected buggy behavior in case no columns found in data_readArray.
2015-06-19 06:08:09 +00:00
83547ce29f
condensed multiple import statements into general one at module start.
2015-06-15 15:36:58 +00:00
66ce1d0b33
speed up for inversePole method. Now only performing symmetry equivalence when asked for SST.
2015-06-13 11:51:10 +00:00
0efbd4b11f
added Colormap.color(fraction) function to interpolate a color from the colormap.
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cleaned Colormap.export by now relying on new interpolation function.
2015-06-13 11:46:32 +00:00
3d7dfba40a
syntax polishing
2015-06-13 11:43:34 +00:00
d894900c2e
added support for marc 2014:X
2015-06-11 18:19:52 +00:00
48f31f13a6
label_index now transparently searches for “1_”+label if label itself not found.
...
added label_dimension method returning the dimension of the requested object, i.e. 1, 3, or 9 as typical outcomes.
2015-06-08 05:02:11 +00:00
83d5686995
added check before trying to delete/dismiss file
2015-06-06 11:18:39 +00:00
a8d61a29d6
added newlines at end of colormap.exports
2015-06-06 11:09:15 +00:00
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
9d5ca8b631
orientation matrix shape checked in “ fromMatrix “ function
2015-05-28 21:52:05 +00:00
58eb4fc301
transparent (3,3) reshape of matrix when generating orientation.
2015-05-27 18:56:18 +00:00
c8d774f456
adopted math from Martin Baker to calculate quaternion from matrix representation.
2015-05-22 20:04:05 +00:00
4bd44f8e43
better robustness against scalar arguments and “None”.
2015-05-21 21:53:54 +00:00
99adf42f0f
improved robustness of labels_index determination.
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fixed errors in data_readArray and improved functionality. Can now cope with list of columns. reads all valid columns returning list of invalid ones. updates table.labels accordingly.
2015-05-21 00:02:32 +00:00
06f017effa
added possibility to dismiss (delete) output file upon closing an ASCIItable.
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“None” labels are disregarded in labels_index() method.
2015-05-19 21:11:49 +00:00
9f569d04c6
added “.close()” method to close input and output at the same time.
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accept header only if space present between number and “head” string.
2015-05-19 20:35:56 +00:00
5d19e55eb4
corrected access by number
2015-05-15 13:35:50 +00:00
b30eba3919
introduced (untested) OR calculation
2015-05-15 12:44:48 +00:00
fa1368204d
fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help
2015-05-14 17:07:50 +00:00
b60f868a76
renumbering asciitable when readArray for selected columns only
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test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
88e16f9344
corrected Bain model
2015-05-08 14:45:59 +00:00
90ae536204
introduction of orientation-relationship (OR) models: Kurdjumov-Sachs (KS), Nishiyama and Wassermann (NW), Greninger-Troiano(GT), Bain
2015-05-08 14:14:44 +00:00
4448187c1e
functions have been removed in previous commit
2015-05-05 14:44:31 +00:00
9694d63874
introduced option mute output to screen
2015-04-22 18:47:45 +00:00
43b665ba48
add getAverageOrientation() to Orientation class as class method.
2015-04-02 19:15:09 +00:00
32f9e7f9d8
now giving just a 'Remark' when h5py is not found
2015-04-01 14:43:34 +00:00
f5801601d8
fixed UnboundLocalError (calling variable before assignment) in “inversePole” function
2015-03-29 19:16:45 +00:00
0e7325b27d
added function — “inversePole” axis rotated according to orientation (using crystal symmetry to ensure location falls into SST)
2015-03-28 07:43:49 +00:00
151d4ff75b
fixed bug (crash) in case (meaningless) strings found after part or section key.
...
DAMASK itself is fine with it, and it can be used for commenting.
thanks to B. Bode for figuring out
2015-03-27 16:23:21 +00:00
8a30021202
cleaned up core modul
2015-03-27 14:10:18 +00:00
dd5055dc19
improved warning in case the core module is not found, corrected '/echo/' handling (had problems with key 'c/a'
2015-03-15 15:24:45 +00:00
89fa31b070
avoid troubles with /echo/ tag by considering it as a comment
2015-03-13 14:46:11 +00:00
4c1e9c559b
removed debug printing.
2015-03-06 15:13:18 +00:00
3d86c9b363
corrected conversion of quaternion to AxisAngle and Euler angles.
2015-03-06 13:54:30 +00:00
7818a8f467
Add codes about enforcing the boundary constraints for the fitting parameters, especially for the exponent term of non-quadratic yield functions.
2015-02-05 21:25:00 +00:00
6cf9907cc9
added support for Marc2014
2014-10-22 07:43:06 +00:00
84df61d4a0
made license check tolerate non-existing licenses
2014-10-21 05:40:26 +00:00
b7f078971b
added background threading (might be used in more than one script)
2014-10-15 08:32:53 +00:00
8985a2d7e6
fixed wrong position when comparing tables
2014-10-09 15:37:35 +00:00
033a275d82
a bunch of small changes. deleted compiled FFTW libraries
2014-10-02 21:27:03 +00:00
28a7c4c727
corrected (probable) bug in disorientation calculation.
2014-08-22 15:45:03 +00:00
d5e2e42f21
file handle closing can now be done from within class.
...
methods:
.input_close()
.output_close()
2014-08-22 15:37:46 +00:00
a8ced53b59
fix for the fix. now both, single column and single line files are working
2014-08-07 08:51:25 +00:00
1402527f48
fixed nasty bug cause strange behavior for voronoi tessellation
2014-08-06 19:32:26 +00:00
c8cd775747
added spectral solver grid location and index function to util library
2014-07-21 17:49:45 +00:00
28f3ba6841
fixed abaqus job submission
2014-06-25 08:32:33 +00:00
930cd0f3ac
improved abaqus test structure
2014-06-24 15:32:42 +00:00
1333921ed5
improved logging
2014-06-18 09:03:48 +00:00
7d8934c9f6
made some more functions case insensitive
2014-06-17 08:53:37 +00:00
eac0217b78
check for valid marc version
2014-06-17 07:29:05 +00:00
51b92f3ef9
simplified option parsing (so far, only for addCalculation and addMises)
2014-06-17 07:10:10 +00:00
488927a231
worked on phenopowerlaw test, made material.config writer case insensitive, polished lattice, removed deprecated part of documentation
2014-06-16 13:11:26 +00:00
25459823ee
improved on test scripts to support individual parser options
2014-06-11 17:46:26 +00:00
07765da01a
fixed typo
2014-06-07 08:36:43 +00:00
f928d9406d
replaced print output by logging class for better control over output (level, screen/file)
2014-06-04 15:34:35 +00:00
27ffa658b6
corrected use of variants
2014-06-03 17:19:56 +00:00
41b097bbc1
simplified updating
2014-06-03 13:09:52 +00:00
5321019457
updated some test related files as a preparation for a more intuitive automator
2014-06-03 10:30:51 +00:00
8493d6b414
now correctly detecting symbolic links for different marc versions
2014-05-16 06:21:50 +00:00
3d4ef650f3
simplified test scripts using msc.marc.
...
changed tolerance for hex test. was successfull for rev 3058, but now needs less strict tolerance, which seems to be related to the marc run script or the library, because with rev 3058 and current marc it has a slightly higher error
2014-05-09 11:29:35 +00:00
02edadfdeb
fixed typo in marc class
2014-05-08 11:02:26 +00:00
6df66c6349
updated Marc run_damask scripts, linking against BLAS is done by Marc anyway, removed. renamed extension of original files from org to more explicit original
2014-05-07 14:29:53 +00:00
86cec35799
new test for Marc 2013.1 + small changes on marc solver class to run with intermediate release (20xx.1)
2014-04-14 16:18:08 +00:00
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
3b20f1154e
added macro releases 2013 and 2013.1
2014-03-07 09:22:04 +00:00
6fd8407d6e
moved "predefined" to colormap init
...
cleaned interpolate to not change color model
fixed color range cropping issue
2014-02-28 16:09:01 +00:00
3abe4699b7
fixed typo in output
2014-02-28 12:23:46 +00:00
3dee38433d
fixed formatting
2014-02-27 18:08:37 +00:00
4e5803fc36
forgot to clear readBuffer upon data_rewinding...
2014-02-06 16:37:45 +00:00
bc4cc20c55
slightly polished makefile and numerics, recompile fftw with icc; still not running with ifort 14.01
2014-02-06 10:41:34 +00:00
ccb950f3d8
checked Unix command piping conformity -- seems to now work:
...
seeds_fromRandom |
geom_fromVoronoiTessellation |
geom_grainGrowth |
geom_unpack |
geom_pack
However, grainGrowth functionality seems broken...
2014-02-03 23:44:29 +00:00
83e4bc3247
updated test for restart, now also checking if number of increments is the same
...
fixed output of test class
fixed small bug? in asciitable.py, @philip: please check
2014-02-03 19:30:28 +00:00
521a9d2d81
changed STDOUT to STDERR for complaining about missing h5py. Please report any warnings or errors to STDERR since otherwise command piping breaks...
2014-01-29 20:16:31 +00:00
de01c50d79
corrected format string in order to get meaningful error message
2014-01-29 12:54:18 +00:00
a6dac1eceb
fixed lib to use new config file
2014-01-24 13:15:01 +00:00
d66b41c686
fixed installation, will test now
2014-01-24 12:30:27 +00:00
033b979471
corrected __slots__ class variable
2014-01-17 01:37:01 +00:00
fdd4e224ce
fixed integer type clash in Get_Unit function
2014-01-16 22:02:03 +00:00
4d1d4fcf4a
forgot to change obsolete property "pathInfo" to new name "options"...
2014-01-16 21:40:54 +00:00
c402d848f7
adopted "MSC_ROOT" instead of "msc" for pathinfo
2014-01-16 21:35:51 +00:00
50b682db4c
syntax polishing
2014-01-16 21:29:39 +00:00
278f854e41
introduced functionality to get output results by point from the HDF5 file
2014-01-15 22:17:32 +00:00
cbc6f2a3af
updated library for vtk output
2014-01-15 14:58:59 +00:00
01c8c434f7
finished work on the new installation scheme (if no bugs are found ;))
2014-01-14 19:03:41 +00:00
ddc88d4cd6
added (I4P) to output integer type of Get_Unit function since plain integer resulted in compiler error (with ifort 14)
2014-01-13 16:52:06 +00:00
aab0208c65
more modifications, only configure needs modifications
2014-01-12 17:29:00 +00:00
80da1c529e
some more work on the consistent installation scheme, fixed bug in Makefile
2014-01-11 19:13:02 +00:00
22aa934a7d
restructured results class, starting to write the unified damask result class
2014-01-09 21:35:21 +00:00
543639bb8f
added support for Marc/Mentat2013.1
2013-12-19 13:37:35 +00:00
676e621af2
new version of Lib_VTK_IO
2013-12-17 13:24:34 +00:00
2f1db8f69a
introduced delimiter option (default = tab) for ascii table output, use space for geometry files
2013-12-17 08:16:29 +00:00
e20ffb379d
changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
2013-12-14 03:51:22 +00:00
0e84db8f19
improved stability of xxx_append commands when dealing with iterable content
2013-12-12 02:36:05 +00:00
9c7335f799
bug fix: wrong variable name "label" --> "labels"
2013-12-11 14:38:09 +00:00
0e8fdaf59e
changed exponent in IPF color mapping from 1/3 to 1/2 to get closer to TSL-OIM reference.
2013-12-09 18:57:38 +00:00
24a4ca8ca8
"quack-like-a-duck" check for object properties.
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sum equiv Quats don't need inverse option anymore.
fixed (severe) bug in IPFcolor determination.
2013-12-09 15:49:57 +00:00
c1b5b802ec
fixed problem of adding strings in "data_append" resulting in infinite recursion.
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more gracefully check for problems.
numpy.loadtxt now correctly transposes single column of data.
2013-12-09 15:45:18 +00:00
d17d6636df
substantial rewrite of former package. now includes dedicated orientation and (associated) symmetry class. should be easier to handle...
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new or improved methods:
- disorientation (between two orientations)
- IPFcolor: TSL color of inverse pole figure for given axis
2013-11-25 19:04:39 +00:00
05fa8bf580
make data_append() coping with any iterable data type (not just list)
2013-11-25 18:58:27 +00:00
9ac8846e41
compiling with hdf5 is now working for DAMASK (if HDF5=ON) and for playground example in private
2013-11-07 12:52:36 +00:00
c496288144
make "orientation" module part of damask python interface
2013-10-08 13:56:28 +00:00
ec6440f1f4
when adding labels now making sure that they get processed during output writing
2013-10-08 13:54:13 +00:00
a2169e338f
fixed type-casting problems (mainly with Lib_VTK_IO)
2013-09-26 17:21:46 +00:00
9f39405adf
fixed material.config of elastic tests to run with new error, currently to strict, needs fix
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removed long spectral example test from list of daily tests
2013-09-20 16:23:52 +00:00
a0f304021f
fixed restarting for Polarisation and AL, updated corresponding test and polished output in python (some statements are screwed up when making them Python3 compatible)
2013-09-20 14:22:37 +00:00
415892b8e7
did some conversion needed for use with python 3
2013-09-18 19:31:27 +00:00
59ba41e9e7
forgot this in last commit
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Important: Do not update only the code dir, also the lib dir
2013-09-18 14:14:39 +00:00
3eb8aa1362
checked for python3 compatibility:
...
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
3bb5a5e7b5
line too long in DAMASK_spectral_solverPolarisation.f90, reordered curl calculation for clearer look, fixed test for Marc 2013
2013-08-08 18:10:58 +00:00
4cb6c0a706
added support for MSC.Marc>2013 to tools (execution with option for optimization (h/l/-) and OpenMP (True/False)
...
added test for MSC.Marc2013
removed automated test run for MSC.Marc 2010, hast to run on a different machine and is deprecated anyway
2013-08-08 09:12:44 +00:00
cc6c524740
updated test for spectral solver example and example files. changed marc job submission such that the marc version number is no longer expected at the end of the subroutine file
2013-08-06 09:48:57 +00:00
f896b4a01e
updated Marc/Mentat integration once more to minimze interference with original instal
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added support for Marc2013, which is now default in apply_DAMASK_modifications
2013-07-24 08:41:58 +00:00
9abc9a99fc
added possibility to
...
* read ASCIItable not having labels
* write numpy array as data
2013-06-30 00:21:51 +00:00
fab0ea8e4e
interpolation method is now an attribute of the Colormap class; added classic "rainbow" colorscheme to predefined ones
2013-05-28 20:15:13 +00:00
65c5090378
added option to linearly interpolate colors to Colormap class
2013-05-28 17:33:51 +00:00
2784a96a51
do not print colormap name for format=raw
2013-05-28 14:45:53 +00:00
7c42facfe0
predefined colormaps now as class attribute of "Colormap"
2013-05-28 14:04:25 +00:00
ee2595c008
added method to use predefined colormaps
2013-05-28 13:50:36 +00:00
4fda285e08
added method to invert colormap
2013-05-28 12:18:25 +00:00
d01a8bdf8c
renamed methods "to" and "asModel" to more (?) meaningfull "convertTo" and "expressAs"
2013-05-28 11:47:15 +00:00
8421587724
added some space here and there for more readability
2013-05-28 11:39:26 +00:00
190a59b707
set Lib_VTK_IO-master.zip and related files back to initial version, new version is not working with MSC.Marc 2010
2013-05-15 16:43:18 +00:00
b83b557af2
updated Lib_VTK_IO again. Contains small bug fix ans support for Base64 encoding
2013-05-10 12:57:00 +00:00
cfac73043d
some lines in crystallite.f90 exceeded limit of 132 characters
...
fixed bug in Lib_VTK_IO.f90 (informed author as well)
added zip file containing source of Lib_VTK_IO.f90
2013-05-08 17:48:00 +00:00
Philip Eisenlohr