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DAMASK_EICMD
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528 Commits

Author SHA1 Message Date
chen 83dae7f9a8 add data manipulator 2016-10-07 16:41:17 -04:00
chen 491b4e31ec add function to extract path based on label 2016-10-07 15:33:43 -04:00
chen 753d71965e data structure file for HDF5 2016-10-07 15:31:29 -04:00
chen e148ecc3e3 quick hack to locate the HDF5 data structure def file 2016-10-07 10:46:07 -04:00
chen 2cbec97eab update xml definition of data structure in HDF5 2016-10-07 10:45:31 -04:00
chen 7262ed9a17 use xml file showing the data structure in HDF5 2016-10-07 10:00:03 -04:00
chen aae2bcf6f9 add new interface class to HDF5 2016-10-07 09:47:15 -04:00
Martin Diehl e20623845a Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-09-22 16:14:07 +02:00
Martin Diehl 6fade15323 no blank lines after docstring 2016-09-21 17:46:53 +02:00
Martin Diehl 9e3c54b0e3 a few comments and adjusted calculation 2016-09-21 17:06:50 +02:00
Martin Diehl 7291c20cd4 added reference 2016-09-21 17:06:50 +02:00
Martin Diehl e5ba508080 added funtionality to run selected test only and functionality to show available tests 2016-09-20 07:10:07 +02:00
Martin Diehl fbacdd8e6d Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-09-11 19:17:35 +02:00
Martin Diehl 9d7cad1fa4 python3 compatible solutions that still work on python2 2016-09-11 19:03:32 +02:00
Martin Diehl 0b4e75c201 update function was not working due to name clash for self.update 2016-09-10 20:44:46 +02:00
Martin Diehl 590f42cdb6 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-09-09 22:35:44 +02:00
Martin Diehl 1e16ebe2ef not used any more 2016-09-08 08:45:46 +02:00
Martin Diehl 4bbd69309d Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-09-05 01:29:09 +02:00
Philip Eisenlohr 6f843ce85b Merge remote-tracking branch 'refs/remotes/origin/development' 
Conflicts:
	lib/damask/test/test.py
 2016-09-04 18:55:13 -04:00
Philip Eisenlohr cde7de4e9f improved superclass handling and compare_Tables 2016-09-04 18:46:53 -04:00
Martin Diehl 221d3753f0 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-09-04 19:07:15 +02:00
Martin Diehl 6ea7eeee08 bugfix when restoring old behavior 2016-09-04 07:34:58 +02:00
Martin Diehl d94db61534 update only supported by minority of the tests 2016-09-03 17:01:10 +02:00
Martin Diehl c05307a273 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-09-03 14:35:53 +02:00
Chen d41ac4e463 remove white space in docstring 2016-09-02 14:35:23 -04:00
Chen 4c6b8c490f change one-line docstring to fit in one line. 2016-09-02 14:34:35 -04:00
Chen b16046fd43 remove unused import for test.py 2016-09-02 14:31:00 -04:00
Chen 2b3faf204c make table compare normalize data by type (scaler, vector, tensor) 2016-09-02 14:30:08 -04:00
Philip Eisenlohr 32c4a20a46 clean up, added --debug to base class, renamed testPossible to feasible 2016-09-01 15:37:49 -04:00
Philip Eisenlohr f9c3d335fc two new methods to convey deemphasis and deletion 2016-08-25 11:59:04 -04:00
Martin Diehl c2b1499d84 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-08-16 12:46:03 +02:00
Philip Eisenlohr 6bdce9b332 fixed error for completely empty label list in read_array 2016-08-11 14:22:07 -04:00
Martin Diehl 0219a5f0e3 regex match 2016-08-01 17:01:13 +02:00
Philip Eisenlohr 0056f05b9d all functions using angles now feature logical "degrees" 2016-07-31 19:33:26 -04:00
Martin Diehl b02bbc77d8 correctly handling whitespace 2016-07-31 15:20:44 +02:00
Philip Eisenlohr bb5070b52f util.report without mandatory arguments 
reporting can now omit either "who" or "what". cleaner output in case of no "who"...
 2016-07-18 10:20:39 -04:00
Martin Diehl 9441ee7326 removed obsolete root relation 2016-07-16 09:36:15 +02:00
Martin Diehl 7f67ff05fd used in both functions 2016-07-15 16:53:57 +02:00
Martin Diehl 0b145826a6 unicode docstring does not work for abaqus, but if using ö pyflakes wants to have a unicode docstring 2016-07-15 16:51:49 +02:00
Martin Diehl ade6db3f9c uses version string from CONFIG file 2016-07-14 16:12:05 +02:00
Martin Diehl 787a8da1c3 removed remainders of Corientation compilation 2016-07-14 16:10:59 +02:00
Martin Diehl 9e3f4b1ec4 unicode string caused trouble with Abaqus' IronPython 2016-07-14 16:09:04 +02:00
Martin Diehl 3314e5f051 updated symlinking, removed unused "rootRelation" 2016-07-14 15:11:49 +02:00
Martin Diehl 83e1970f71 now working with tcsh 2016-07-14 12:24:55 +02:00
Martin Diehl 0fbb56a6ef python env reads from $DAMASK_ROOT/CONFIG 2016-07-14 10:42:22 +02:00
Martin Diehl be02300d38 print statement disturbs shell piping 2016-07-04 21:44:59 +02:00
Martin Diehl 4f683d1974 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-07-03 11:47:56 +02:00
Martin Diehl 759126b906 compatible to python3 2016-07-03 11:44:01 +02:00
Martin Diehl af4307ea72 Merge branch 'NoCoreModule' into development 2016-07-01 15:08:47 +02:00
Martin Diehl fa13aa30b0 python 3 at least imports the damask module now 2016-07-01 15:03:25 +02:00
Martin Diehl 259ee072a6 Merge branch 'development' into NoCoreModule 2016-06-27 15:35:46 +02:00
Philip Eisenlohr d669cfb024 removed obsolete importing of sys 2016-05-17 11:15:04 -04:00
Philip Eisenlohr 0c1657693f dirty (but working) fix to adopt table.labels now being table.tags: table.labels --> table.labels(raw = True) 2016-05-17 10:52:21 -04:00
Philip Eisenlohr 9103ee544b Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-05-17 09:52:18 -04:00
Aritra Chakraborty 8d6c601a45 fixed python flake complaints. 2016-05-16 20:17:17 -04:00
Aritra Chakraborty 1c36380a8a fixed typo... 2016-05-16 20:05:57 -04:00
Aritra Chakraborty dc6260be58 changed "labels" property to "tags". added method to inquire about (abstract) labels, i.e. interpreting the tag list to distill underlying label "meaning". 2016-05-16 19:54:00 -04:00
Philip Eisenlohr 280076e7ef removed (probably obsolete) warning about missing h5py module. 2016-05-11 10:04:01 -04:00
Martin Diehl d3ee2c05b9 =removed remaining IDs 2016-05-11 11:43:21 +02:00
Martin Diehl 7f24fe15ed removed svn ID from python files 2016-05-11 11:37:59 +02:00
Martin Diehl a21e8cd863 usind explicitly python2 to run in environments with python 3 as default 2016-05-11 11:01:39 +02:00
Philip Eisenlohr 5d4d78b079 expanded functionality to treat (white space-containing) strings and empty ("") data. 2016-04-28 23:11:06 -04:00
Martin Diehl 7ce208019c Merge branch 'development' into miscImprovements 2016-04-25 12:36:02 +02:00
Philip Eisenlohr ea24becdd4 added "report_geom" shortcut to croak geometry info 2016-04-24 11:20:55 -05:00
Philip Eisenlohr 45e237058b fixed malfunctioning table.label_indexrange(listOfLabels). can now be used as numpy slice. 2016-04-24 10:07:37 -05:00
Philip Eisenlohr 54dec3ea2a remove CR and LF from labels and info lines. Can happen if multiline shell input is parsed... 2016-04-20 15:46:39 -04:00
Martin Diehl 72639d174b fortran code was translated by philip 2016-04-15 00:25:12 +02:00
Martin Diehl 0632dc1308 pyflakes complained 2016-04-15 00:22:41 +02:00
Martin Diehl 573d10f1e1 Merge branch 'development' into NoCoreModule 2016-04-15 00:05:38 +02:00
Martin Diehl 82063494fd adopted to new json format of paraview 
introduced "standard" colormaps for stress, strain, and orientation
file is now implicit the first argument without key (in line with other scripts)
 2016-04-11 19:47:07 +02:00
Philip Eisenlohr da29b1a361 removed line continuation characters (not needed within parentheses) 2016-04-05 13:29:36 -04:00
Philip Eisenlohr 73640587d5 fixed buggy query-by-label-index 2016-03-27 16:26:51 -04:00
Martin Diehl 3824b683bc removed extra cython file, symlink to standard orientation instead 2016-03-24 15:06:04 +01:00
Martin Diehl c73382e51f further cleaning 2016-03-24 14:36:24 +01:00
Martin Diehl d765282165 save fortran code 2016-03-24 14:20:18 +01:00
Martin Diehl 022b089fa7 cleaned core module related stuff 2016-03-24 11:49:23 +01:00
Martin Diehl 143a868dad files resulting from compilation should not be part of the repository 2016-03-23 11:05:00 +01:00
Martin Diehl fafedd5cd6 Merge branch 'LargeFiles' into development 2016-03-22 15:45:42 +01:00
Philip Eisenlohr 1b22b6e4ee replaced variable interpolation into strings by "%" with .format() method 2016-03-21 10:26:30 -04:00
Philip Eisenlohr 8cd1f027b3 bug fixing. 2016-03-21 08:51:56 -04:00
Philip Eisenlohr 01a5343ca2 added another backgroundMessage animation. generally cleaned code a slight bit. 2016-03-20 20:58:10 -04:00
Philip Eisenlohr a41cd3df40 added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid. 2016-03-20 16:46:35 -04:00
Zhuowen Zhao d42f8d5fd4 added possibility to read real numbers as microstructure indices (not only integers) 2016-03-17 17:42:05 -04:00
Martin Diehl 7a4e9856c5 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-03-14 18:47:54 +01:00
Martin Diehl fdd4ab483e core.so is not part of the repo 2016-03-14 05:51:52 +01:00
Martin Diehl 2dbdf9a72f all symbols need to be representable in unicode 2016-03-13 18:21:25 +01:00
Martin Diehl efde4d363d changed encoding 2016-03-07 09:56:14 +01:00
Martin Diehl a4bbdd5ecb further commenting, removing not used variables and code (marc2vtk) 2016-03-04 19:06:36 +01:00
Martin Diehl d1e8f69857 added docstrings etc 2016-03-04 17:55:11 +01:00
Martin Diehl 24391b5398 checked with prospector, adopted mainly docstrings 2016-03-04 17:53:55 +01:00
Martin Diehl 9a405ef41b using more stable way of handling unicode printing, cleaning unicode delete from output of execute 2016-03-04 17:23:38 +01:00
Martin Diehl 75480bc677 modified background threading because using it in postResults led to an dead lock. 
rest modifications are just style
 2016-03-04 15:22:01 +01:00
Martin Diehl 4d8aad36f1 first round of libraries 2016-03-01 23:02:47 +01:00
Martin Diehl 2a3e42a906 prevent import errors (e.g. when using Abaqus, having it's own python without scipy) 2016-02-02 23:24:44 +01:00
Martin Diehl 4fa2a58a19 needed to adopt to new test env (not perfect yet, but keeps things going) 2016-01-29 19:21:04 +01:00
Martin Diehl f2c7eea161 git compatible way of version handling for Fortran and Python 2016-01-27 16:48:27 +00:00
Martin Diehl 81a8b2c4ed color lib for output 2016-01-05 18:17:55 +00:00
Martin Diehl 120b2b8bd2 added test for hybridIA 2015-12-22 22:17:15 +00:00
Martin Diehl 0cfe35dfe6 consistently removing leading and trailing whitespace 2015-12-22 15:59:01 +00:00
Martin Diehl bbb00b30e8 using numpy random 2015-12-17 21:26:59 +00:00
Martin Diehl 37aa559bd4 fixed missing structure type in material.config, small changes in the other code 2015-12-15 14:30:17 +00:00
Martin Diehl 97b96f13b2 updated installation for testing 2015-12-14 21:31:47 +00:00
Martin Diehl 1f08d0fbf6 verbose option for compareTables, new option to filter (now before and after normalizing) 2015-12-11 17:23:36 +00:00
Franz Roters d196032bd3 these are also required 2015-12-08 14:27:24 +00:00
Martin Diehl c3dc05c53a continued work on test class and adopted some tests 2015-12-04 22:40:39 +00:00
Philip Eisenlohr a18a1066e2 started to rework test class. Martin probably needs to check and continue improving on this. 2015-12-03 21:52:03 +00:00
Philip Eisenlohr fc2d79e17b added more animations… 2015-12-02 23:08:18 +00:00
Martin Diehl 0e76ef85c1 checking return code in util.exececute, cleaning makefile, deleted dummy docs 2015-12-02 13:21:17 +00:00
Martin Diehl 0ffcb7fdaf cleaning 2015-12-01 16:37:20 +00:00
Martin Diehl 161e637ba6 not needed any more (at more usefull position in damask.util) 2015-11-30 16:30:35 +00:00
Philip Eisenlohr 38c536b6b7 improved unicode handling. 
background message is now stoppable.
background message not “jumping” (multiplying) anymore.
 2015-11-20 16:15:34 +00:00
Philip Eisenlohr 30a481f152 fixed forgotten symmetry property for average orientation. 2015-11-14 04:36:46 +00:00
Philip Eisenlohr 2b5cb08c4d new method “head_putGeom” translates info-array into geom-description 2015-11-14 01:48:16 +00:00
Philip Eisenlohr 6211a9faad symQuats-related functions can take optional argument to downselect return values. 
“getAverageOrientations” —> “average” and takes optional multiplicities of orientations in list.
 2015-11-14 01:46:44 +00:00
Martin Diehl b700721905 comment on literature 2015-11-08 11:44:46 +00:00
Philip Eisenlohr 519484233c can now deal with “empty” header line. 
example:
# some comment
# further stuff
1_dim 2_dim
34 33
1 22

would work with “labeled”=True and stores the first two lines as “info”.
 2015-11-03 21:14:45 +00:00
Martin Diehl 4ac9ef602e still trying to find a stable solution on all machines 2015-10-29 21:51:57 +00:00
Aritra Chakraborty 9ea0898cd9 corrected the convention added yesterday; “proper” and ‘improper” was the wrong way around. “proper = True ” considers the bigger (2 adjacent) SST. In general, an improper rotation is implicitly assumed when projecting a pole into the (single) SST, hence this is termed “improper” now. 2015-10-23 20:16:01 +00:00
Philip Eisenlohr 15963391aa inSST and inversePole now can consider the secondary SST related to improper rotations. Secondary SST is immediately neighboring (positively rotated around Z). 2015-10-22 21:15:15 +00:00
Martin Diehl 31579b3f88 tolerances caused problems, introduced new funtionality based on np.allclose 2015-10-22 05:59:11 +00:00
Franz Roters b676ed0085 support for Marc 2010 was dropped a long time ago 2015-10-20 13:32:48 +00:00
Franz Roters a087eedd54 added support for Marc2014.2 (so far installed on maws14 only) 2015-10-20 13:25:59 +00:00
Martin Diehl e72ae63873 geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly 2015-10-14 21:35:56 +00:00
Philip Eisenlohr 7df8d95cd0 slightly cleaner way of dealing with disorientation calculation when axis not required to fall into SST. 2015-10-09 13:03:10 +00:00
Philip Eisenlohr 26f8f74310 undone np.unique of columns since this would introduce the unwanted side-effect of (messily) sorting columns. user expects to get sorting as provided through command line. 2015-10-09 12:55:30 +00:00
Martin Diehl 4c46d155ec line continuation not needed 2015-10-09 10:24:17 +00:00
Martin Diehl 61090c955d removed code doubling 2015-10-09 05:51:58 +00:00
Martin Diehl 851d2e1b2c prevent to load columns more than once\n @Philip: OK? 2015-10-08 17:47:00 +00:00
Philip Eisenlohr 3b0dc374bb now using ‘emph’ in reporting function instead of code doubling. 2015-10-07 01:07:56 +00:00
Philip Eisenlohr 801d57af4c fixed buggy behavior caused by assigning string instead of single-item list to readBuffer. 2015-10-07 01:03:26 +00:00
Martin Diehl 6e05082133 might be needed in multicore env 2015-10-06 18:01:31 +00:00
Martin Diehl 95a8b54996 buggy behavior when read buffer contained string (len > 0, but no pop() method) 
@Philip: please check if intended behavior
 2015-10-06 16:19:37 +00:00
Philip Eisenlohr e089e60202 transparently deal with one-dimensional array output 2015-09-30 18:44:54 +00:00
Philip Eisenlohr b2243ae3c1 small polishing 2015-09-29 22:25:57 +00:00
Martin Diehl 948aa0c544 was missing in last commit 2015-09-24 10:01:15 +00:00
Philip Eisenlohr 2aa1073949 relocated “croak” and “report” functionality to here. needs to be altered in all scripts that still use the ASCIItable class for those… 2015-09-22 21:00:18 +00:00
Martin Diehl 6a3a0f3859 allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt) 2015-09-16 19:44:11 +00:00
Harsha Phukan 24bd3a6eee added “non-strict” version to find disorientation, neglecting the search for axis falling into SST (has linear instead of quadratic effort). 2015-09-16 17:07:02 +00:00
Harsha Phukan 8a05584924 bg.message does not require symbol selection anymore—will pick random if nothing specified… 2015-09-15 19:02:00 +00:00
Martin Diehl 5f9fae1b75 simplified reporting using "emph" 2015-09-11 12:55:43 +00:00
Philip Eisenlohr 31bb27268c removed dangerous property overload (.asQuaternion() —> .quaternion) 2015-09-09 22:37:18 +00:00
Tias Maiti 7495b33b68 label_dimension dropped indices >9 due to buggy string comparison… 2015-09-08 23:12:45 +00:00
Chen Zhang ba418a5c97 reflect recent changes in orientation class 2015-09-03 16:50:49 +00:00
Tias Maiti eb5ad7528f fixed bug in asEulers() output in degrees 2015-08-29 23:22:32 +00:00
Martin Diehl 6848d83d13 behavior of IO_stringPos was unsafe in some situations, also took the chance to rename the variables used in its context to a more meaningful name. 
functions in the core module are not used, including kdTree
 2015-08-28 07:38:48 +00:00
Chen Zhang f4145dd505 add numpy header location in the setup script. 2015-08-25 18:06:36 +00:00
Philip Eisenlohr 636eb8a087 multiple fixes and improvements. 
1) asAngleAxis got “degrees” switch, fixed buggy output for negative angles, now angles are always non-negative.
2) removed rotateBys.
3) asEulers corrected for cases w==z or x==y.
4) added method symmetryQuats.
5) calculation of disorientation (finally) fixed, returns tuple (disorientation quaternion, index symA, index symB, boolean whether A—>B or B—>A).
 2015-08-24 13:39:09 +00:00
Philip Eisenlohr 858fe7e897 prevent closing sys.stdin or sys.stdout 2015-08-24 00:40:52 +00:00
Philip Eisenlohr 7ceb7f7614 fixed problem when reading single label through data_readArray 2015-08-23 23:18:34 +00:00
Philip Eisenlohr 681b7f0831 added ‘emph’ method. 
additional background message animations.
 2015-08-22 17:02:49 +00:00