3fa0312087
update usage of asciitable to new interface
2015-09-23 19:20:18 +00:00
42ac7902f7
indents wrong in fortran, seeds_fromDistribution bugfix and using ASCII table facilities
2015-09-20 21:03:10 +00:00
666b438e6a
using ASCII table
2015-09-18 16:12:27 +00:00
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
0c7f4e690a
fixed reference, still not 100% sure if everything is correct, but apparently the test never run
2015-09-12 16:30:28 +00:00
c53bf02fea
changed back to old behavior
2015-09-11 15:38:03 +00:00
c69e7ec149
switched conjugation to apply to symmetric equivalents instead of incoming quaternion.
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passing-down of degree option handled directly.
2015-09-09 22:43:56 +00:00
1c164574ac
more fixes following new possibilities of ascii table
2015-09-08 19:42:14 +00:00
4e9b27b0ce
failure in last commit, using standard keyword eulerangles instead of eulers
2015-09-08 18:48:58 +00:00
dad0fdfb85
still needed
2015-09-05 14:59:52 +00:00
45a3568b40
bugfix for last commit
2015-09-05 14:46:57 +00:00
b4768013a0
fix output error in output geom file.
2015-08-26 16:39:33 +00:00
00b8660203
redundant.
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functionality available in “geom_fromTable”…
2015-08-20 19:46:11 +00:00
c85306257d
redundant.
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improved functionality now via “ang_toTable” and “geom_fromTable”…
2015-08-20 19:44:17 +00:00
63d5506388
adopting further simplifications provided through ASCIItable class.
2015-08-20 19:42:05 +00:00
05a8124d82
simplified rescaling interpretation
2015-08-19 18:30:50 +00:00
324c5b36d3
restructured to get help even without mentat release
2015-08-18 16:39:47 +00:00
befd6aa7ff
fixed stderr output (croaking..) as per new ASCII table style
2015-08-18 04:33:45 +00:00
419a612d0e
updated to new ASCII table style
2015-08-18 04:32:19 +00:00
1976cf44c1
fixed os.path.splitext bug when using STDIN input
2015-08-12 21:56:37 +00:00
dfbd2fd013
fixed bug for STDIN processing
2015-08-12 21:28:07 +00:00
9ee49b2c3b
adopted recent changes to API in ASCIItable.
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removed Voronoi method from core module.
fixed buggy Laguerre tessellation (wrong seed scaling, wrong x,y,z order)
2015-08-12 20:55:53 +00:00
8217fdb115
adopted recent changes to API in ASCIItable.
2015-08-12 18:56:40 +00:00
31a6ac328d
adjusted to new ASCII table style and bugfix
2015-08-12 18:53:39 +00:00
cd70ec5a38
adopted recent changes to API in ASCIItable.
2015-08-12 18:43:11 +00:00
cd9a802a2b
adoption of recent API change in ASCIItable.
2015-08-12 18:09:40 +00:00
5dad5df588
adoption of recent API change in ASCIItable.
2015-08-12 17:47:38 +00:00
3097c87bea
adoption of recent API change in ASCIItable.
2015-08-12 17:43:49 +00:00
57dfa6a87e
added fall-back to non-multithreading execution when using only single CPU.
2015-08-08 21:43:21 +00:00
31f6d22d89
added option (force) to override selective seeding check.
2015-08-08 20:20:53 +00:00
889a5807bb
more conservative (and probably appropriate) variance default for Laguerre tessellations: 1.0 —> 0.1
2015-08-08 20:12:26 +00:00
bbeb210708
functionality now provided by more general “geom_fromImage”
2015-08-07 22:16:40 +00:00
9729c03c00
removed obsolete code. added croak about number of cpus used.
2015-08-07 22:15:24 +00:00
4ed56a8ba6
removed debugging print statements
2015-08-07 20:52:57 +00:00
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
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changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
de90a04374
assign indices from microstructure column if present for laguerre tessellation
2015-07-30 04:42:00 +00:00
599bb768ef
index microstructure from 1 instead of zero for laguerre tessellation
2015-07-28 22:15:32 +00:00
b69a422529
Generate the geometry description of a directional non-equiaxed grain structure, e.g., RVE cutted from a cold-rolling sheet. '--reduct' specifies the thickness reduction after rolling, and '-n' specified the number of samples cutted, e.g., n=5, then five samples will be cutted from the sheet along theta = 0 (the rolling direction), theta = 22.5, theta = 45, theta = 67.5, and theta = 90 (the transversal direction).
2015-07-24 14:12:10 +00:00
fc0e29c45b
removed erroneous rescaling of Laguerre weights.
2015-07-22 22:34:40 +00:00
b15f68905f
fig a bug.
2015-07-21 15:38:12 +00:00
331a4c5775
add the number of the re-constructed orientation into the name of output files.
2015-07-18 17:25:05 +00:00
d676fdc1ce
fixed default behavior of symmetry. used to advertise having cubic symmetry but was using [].
2015-07-10 16:58:30 +00:00
fcdd80bba3
switched order of command line options to make consequence of “degrees” switch more clear, i.e., it affects both the tolerance and Euler angles…
2015-06-29 09:40:44 +00:00
129026662c
fixed small bugs.
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modernized file treatment.
improved Laguerre speed by a factor of 2 due to precalculating the squared weights.
2015-06-27 08:41:08 +00:00
e310763c52
Novel script to generate geometry description and material configuration from position, phase, and orientation data in an ASCIItable.
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Can deal with phase-specific lattice symmetry, condenses orientations within a given angular threshold, and might be used in lieu of geom_fromANG when replacing the ANG header.
2015-06-21 11:56:05 +00:00
acad1246f3
fixed wrong variable name for quaternions as rotation options
2015-06-19 04:38:00 +00:00
d57c7568dd
simplified processing of ASCIItables by utilizing the improved class methods.
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modernized file looping.
updated help.
2015-06-16 05:42:11 +00:00
a5b3e9d64c
typos fixed
2015-06-14 05:51:53 +00:00
c7f59c6482
change angle into radian.
2015-06-11 17:57:23 +00:00
bfe76794af
add the output of ".ang" file
2015-06-11 16:50:29 +00:00
c45a0ce55e
improved stability for geom_fromAng. no longer depends on correct header information.
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geom_fromVPSC with correct size determination now
2015-06-11 10:06:53 +00:00
b7f98c00d6
input file handling now save for large file count.
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streamlining of input column detection.
fixed bug iterating through “grainIDs” instead of “grain”.
proper closing and dismissal of output table file.
2015-06-05 11:50:15 +00:00
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
f50927b99f
Create seeds file by poking at 45 degree through given geom file.
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Mimics APS Beamline 34-ID-E DAXM poking.
2015-06-05 11:41:44 +00:00
6eb83530b8
streamlining
2015-06-05 11:34:41 +00:00
147cc91496
some polishing to laguerre tessellation
2015-05-28 20:57:03 +00:00
c5349ab041
some polishing for option parser
2015-05-26 20:22:11 +00:00
73c6bd767f
added options for selective seed picking based on Mitchell’s best candidate algorithm for more uniformly distributed (spatially) seeds points
2015-05-26 20:13:35 +00:00
737e474cea
consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior
2015-05-22 05:56:49 +00:00
7af176d13f
introduced option to set microstructure starting index
2015-05-21 10:04:52 +00:00
d70b903d1b
output follows standard way, test need to ignore header
2015-05-20 21:26:49 +00:00
056ba0f2e4
reverted back to hard-to-read but working if else statement
2015-05-20 19:40:11 +00:00
d99f13a49f
now operating on file, only on stdout if input comes from stdin
2015-05-20 19:07:52 +00:00
cd94469ea0
VPSC file format not used, if needed convert first to geom
2015-05-18 18:59:41 +00:00
76d456ee49
fixed rename
2015-05-18 14:48:25 +00:00
7775b254bd
updated tests to follow new addStrainTensors syntax, check in seeds_fromTable.py was wrong with simplified default
2015-05-18 08:42:14 +00:00
cddbd53789
reads better
2015-05-16 14:32:32 +00:00
e45dcb7948
more readable if-else oneliner
2015-05-15 13:38:27 +00:00
fa1368204d
fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help
2015-05-14 17:07:50 +00:00
7ea350b90e
corrected default for multiple arguments of fixed length (tuple, not list)
2015-05-14 10:00:56 +00:00
4899b3df0a
found some unused (forgotten debug) statements
2015-05-11 20:09:49 +00:00
6f112b46b5
can be done with TSL OIM in current versions
2015-05-10 15:56:59 +00:00
b60f868a76
renumbering asciitable when readArray for selected columns only
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test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
d0180540eb
fixed bugs introduced with last commit and restored capability of handling legacy seeds format
2015-05-08 05:02:44 +00:00
ce0675f359
added options for laguerrre tessellation
2015-05-02 07:41:14 +00:00
afe7225357
add the option of exporting '.ctf' format file.
2015-04-28 18:09:07 +00:00
f8e06b488a
make the script consistent with other scripts:
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1. use new file handles
2. add scriptID and version
2015-04-28 17:47:06 +00:00
906c3f63a1
updated hybridIA sampling to work with new format
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cropLinearODF is not working for the new format, but filterTable should be able to do the task
2015-04-27 05:30:29 +00:00
b9c5edf7ab
changed to standard file and output handling
2015-04-22 18:57:44 +00:00
2e6bbe887e
changed header in seeds file from 'x,y,z' to '1..3_coords'.
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scripts now use the header information and do not rely on coordinates being in the first three columns
2015-04-22 18:44:54 +00:00
0cec85ac63
corrected order of output, config file output is not supported yet
2015-04-21 19:37:03 +00:00
4581e22a0f
change reading in to standard loop over files
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getting bins now from header information
format of linearODF now standard ASCII table style with header/keyword/label
2015-04-20 14:22:45 +00:00
f43afa13d8
simple script to generate geom file from stacked tiff images.
2015-04-20 12:57:45 +00:00
f5762209dc
changed 'range' keyword to 'limit', now using proper ASCII table (with column 'intensity') for linearODF
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hybridIO_linODFsampling simplified
2015-04-15 14:37:46 +00:00
64764b0902
introduced moving of multiple seeds at the same time
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introduced more suitable check for convergence of the first bin. Improvements in bringing seeds with a size outside the range of the target closer are no longer invisible
2015-04-14 12:42:35 +00:00
d008b566b4
ensure to bring all seeds within target range
2015-04-10 20:47:20 +00:00
9d3cd8f997
added options do define number of maximum seeds to move simulateneously
2015-04-10 18:08:17 +00:00
4aa63e1ab9
handling of seeds files without microstructure (but eulerangles)
2015-04-10 16:59:08 +00:00
09bfd1e18e
more verbose error handling for euler angles limits
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ensuring that ROUNDED euler angles are not above the limits
2015-04-10 14:50:23 +00:00
e01e270300
improved search for double microstructures (was N^2 bogosort) in geom_fromAng and introduced it in geom_fromVPSC
2015-04-10 12:57:25 +00:00
92a67e1a9d
geom_fromAng.py crashed when found empty line (eg. at the end of the file), now fixed
2015-04-01 14:42:25 +00:00
004375cc79
removed table rewind causing problem with STDIN/STDOUT
2015-03-27 13:57:34 +00:00
69b8e02a3a
removed unwanted ASCII table data rewind causing problem for STDIN
2015-03-26 21:15:59 +00:00
643f7fe934
some comments
2015-03-26 05:04:12 +00:00
4b19b74d11
number of intervals is limit/delta not limit/delta -1
2015-03-13 08:39:55 +00:00
37e40fdf79
Keep consistent with the new file: example.linearODF
2015-03-06 16:21:05 +00:00
5d9abc16e8
the number of grains starts with one.
2015-03-05 20:16:17 +00:00
aeb468254d
missing file.close()
2015-03-05 19:12:07 +00:00
4579a696e8
use OptionParse to parse the command-line options, add help information,
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add the output of material.config file.
2015-03-05 19:01:31 +00:00
d188f35c17
use OptionParse to parse the command-line options, add help information, format the header of output file, now the output file can be used by hydribIA_linODFsampling.py directly
2015-03-05 17:04:16 +00:00
Chen Zhang