Philip Eisenlohr
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d5f9f543ca
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Script to generate PNG image from given column (or 2D data in overall ASCIItable) with custom colormap and pixel sizes.
Supersedes “imageFromData” from “Code” repository.
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2015-02-11 17:25:49 +00:00 |
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Philip Eisenlohr
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9eae665365
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fixed ‘too many files open’ issue when processing a large list of input tables.
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2015-02-11 17:22:47 +00:00 |
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Tias Maiti
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1b1ed3bbcf
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removed unnecessary lines
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2015-02-11 06:18:08 +00:00 |
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Martin Diehl
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63434c2ddb
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corrected error checking for correct type
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2015-02-09 08:57:14 +00:00 |
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Martin Diehl
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7edd209ce4
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corrected wrong name in add..., more verbose error checking for geom_from...
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2015-02-07 22:22:28 +00:00 |
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Martin Diehl
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6140285ddd
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small changes (use ip.x instead of 1_ip). Probably we should modify postResults to use the 1_, 2_, 3_, standard notation for ip as well
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2015-02-07 18:13:51 +00:00 |
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Martin Diehl
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e4a94aa72b
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put changes on algorithm from geom_fromEuclideanDistance into addEuclideanDistance
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2015-02-07 17:11:46 +00:00 |
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Tias Maiti
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2c9c04eb76
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added script to replace all rows of an ASCII table by a single row containing their average
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2015-01-23 00:57:10 +00:00 |
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Martin Diehl
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5be9a75cff
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fixed indentation
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2015-01-22 09:04:01 +00:00 |
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Martin Diehl
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c08f704dee
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added Id + a little help
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2015-01-07 19:29:27 +00:00 |
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Tias Maiti
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ca58216134
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added missing math module import
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2015-01-05 12:25:03 +00:00 |
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Martin Diehl
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3e3c13bf0b
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added missing math module import
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2015-01-04 21:02:17 +00:00 |
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Martin Diehl
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5e8fff13d9
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worked on the vtk binary out, still some problems with multicomponent datatypes
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2014-12-18 21:46:38 +00:00 |
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Martin Diehl
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6604d0f8e8
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polishing
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2014-12-18 19:26:52 +00:00 |
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Philip Eisenlohr
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89f8ba979e
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Add x,y coordinates of stereographic projection of given direction (pole) in crystal frame.
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2014-12-13 00:12:55 +00:00 |
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Philip Eisenlohr
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b17dcd7652
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added options ’—origin’ and ‘—geom’. Latter interprets the geom-header to derive voxel sizes.
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2014-11-18 15:26:59 +00:00 |
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Philip Eisenlohr
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461a3fa979
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fixed syntax error and added ‘—render’ option to immediately see output on screen
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2014-11-18 15:24:09 +00:00 |
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Philip Eisenlohr
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a3196669ea
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exchanged deprecated data array read function
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2014-11-18 15:22:00 +00:00 |
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Philip Eisenlohr
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7136db1fd8
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fixed syntax error: ’options.error’ —> ‘parser.error’ for error handling
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2014-11-18 15:20:57 +00:00 |
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Philip Eisenlohr
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99ffa554eb
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added ‘1_*’ to ‘*’ as possible column label indicator
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2014-11-18 15:20:10 +00:00 |
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Philip Eisenlohr
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b5ef329f34
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changed default position column format from .x,.y,.z to more standard 1_,2_,3_
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2014-11-18 15:18:27 +00:00 |
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Philip Eisenlohr
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f6741138e7
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had badly messed up the file handling in commit 3630. STDIN did not work, files were not checked for existence…
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2014-10-29 13:27:40 +00:00 |
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Martin Diehl
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bdd2d55383
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small bug fix for last commit
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2014-10-24 06:36:01 +00:00 |
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Philip Eisenlohr
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13ba71a314
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fixed bug where option.condition was altered in processing of first file, thus preventing additional files from seeing the same user input.
changed file handle setup to allow for large lists of input files.
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2014-10-23 21:23:10 +00:00 |
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Martin Diehl
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dc7a4bb978
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using damasks extentable option + correct version string
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2014-10-16 14:56:44 +00:00 |
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Martin Diehl
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ce1f17c9cb
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worked on the binary vtk out needed for large datasets
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2014-10-14 07:13:13 +00:00 |
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Philip Eisenlohr
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23ee538dcb
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shortened syntax. fixed undefined file['croak']
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2014-10-02 04:49:46 +00:00 |
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Philip Eisenlohr
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496c3d4bc8
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added line breaks identifier and $Id$ flag
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2014-09-25 21:54:42 +00:00 |
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Tias Maiti
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78ab14806f
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fixed bug in parser option type definition
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2014-09-21 17:59:06 +00:00 |
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Martin Diehl
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d07a098724
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fixed wrong help introduced with last change on 3Dvisualize
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2014-09-19 09:50:26 +00:00 |
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Martin Diehl
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a7d831de06
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forgot to import python module
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2014-09-15 10:07:52 +00:00 |
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Martin Diehl
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5657119b11
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updated post processing test: rotateData is doing something, corrected addDeviator defauls
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2014-09-12 14:49:26 +00:00 |
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Martin Diehl
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f2c4db0bb5
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correcting help and default, some comments
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2014-09-12 14:46:12 +00:00 |
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Martin Diehl
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afb9a2186b
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removed explicit default setting: type='string' and action='store'
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2014-09-12 14:14:55 +00:00 |
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Martin Diehl
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9ba7851c14
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fixed bug in calculation of spherical part. Variables in python functions are intent(inout) in Fortran language!
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2014-09-12 13:13:05 +00:00 |
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Philip Eisenlohr
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5a159dcdfa
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script to add scalar data and/or RGB color tuples to rectilinear VTK file (*.vtr)
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2014-09-05 20:28:39 +00:00 |
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Martin Diehl
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6cdcdecdfa
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post processing scripts are working again.
@Philip: definining one offset for shiftData and one factor for scaleData for tensor/vector/special>1 seems to be more reasonable than per component
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2014-08-25 21:13:39 +00:00 |
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Martin Diehl
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c7837e1f66
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changed manual input/output close to class method
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2014-08-22 16:58:53 +00:00 |
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Philip Eisenlohr
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99e3c9a397
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fixed (potentially) buggy rotation of tensors. convention is:
with A v = b
v' = R v
A' = R A R^T
such that
A' v' = R A R^T R v = R A v (= R b = b', i.e. old result transformed into other coordinate basis)
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2014-08-22 15:32:48 +00:00 |
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Philip Eisenlohr
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df27115472
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extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
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2014-08-22 15:25:51 +00:00 |
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Philip Eisenlohr
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77df55c998
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extended "scalar" capabilities to "special" having arbitrary dimension (defaults to 1, i.e. former scalar case). Breaks backward compatibility since "--scalar" is now "--special". However, "-s" still works as before...
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2014-08-21 17:16:43 +00:00 |
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Philip Eisenlohr
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9aa22d4a08
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simplified column key generation
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2014-08-21 16:17:23 +00:00 |
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Philip Eisenlohr
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96b16dd97b
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reshape "matrix" input data from (currently wrong) 9x1 to 3x3 layout.
simplified input validity check.
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2014-08-21 16:14:06 +00:00 |
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Martin Diehl
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15a6015bc2
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added some more post processing tests
DAMASK env now reports in MiB (GiB is too big for small machines)
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2014-08-07 16:51:26 +00:00 |
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Martin Diehl
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649e637561
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added some more post processing tests and improved output
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2014-08-06 19:06:33 +00:00 |
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Martin Diehl
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938352d43a
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fixed calculation of size and dimension in case of 2D (was limited to third dim only)
plus polishing
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2014-08-06 15:25:18 +00:00 |
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Martin Diehl
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cbafad50d0
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some more work on the postprocessing scripts, decreased test tolerance because spectral decomposition has rounding errors (depending on machine/python/numpy version)
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2014-08-06 13:27:09 +00:00 |
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Martin Diehl
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a0f9865133
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updated to state-of-the art file handling etc
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2014-08-04 20:07:20 +00:00 |
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Martin Diehl
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7df8f04f65
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updated test for postprocessing and improve some of the scripts
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2014-08-04 17:53:41 +00:00 |
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Martin Diehl
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0b93e7c5a5
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corrected addDivergence script. Restarting still not working for new state, needs further investigations: tightend tolerances again
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2014-07-27 09:43:00 +00:00 |
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Tias Maiti
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e01630e073
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fixed bug in tuple assignment
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2014-07-25 17:49:22 +00:00 |
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Philip Eisenlohr
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bee6e0b09b
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added optional weighting column
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2014-07-25 16:38:04 +00:00 |
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Martin Diehl
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d0ecc0943c
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added addPK2 script to test
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2014-07-24 21:42:13 +00:00 |
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Martin Diehl
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7954c9a4a3
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more and improved tests for add...
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2014-07-24 20:21:18 +00:00 |
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Martin Diehl
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38048a09f2
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introduced use of choice for argparse where applicable
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2014-07-24 18:47:09 +00:00 |
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Martin Diehl
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e5dc9e79cc
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some more changes improving the post processing scripts
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2014-07-22 14:21:49 +00:00 |
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Martin Diehl
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e8d2e787bc
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updated first 9 post processing scripts to latest ASCII table handling style
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2014-07-21 19:55:05 +00:00 |
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Martin Diehl
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2f0ecdf7e8
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improved file handling etc. to follow newest style
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2014-07-16 16:41:04 +00:00 |
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Martin Diehl
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e7c282a02d
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some further improvements on ASCII table handling
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2014-07-10 09:27:51 +00:00 |
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Martin Diehl
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f72a87f94b
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polished scripts (option parser, numpy)
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2014-07-09 10:07:24 +00:00 |
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Martin Diehl
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51b92f3ef9
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simplified option parsing (so far, only for addCalculation and addMises)
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2014-06-17 07:10:10 +00:00 |
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Luv Sharma
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596ee18da9
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improved the regex for header reading
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2014-06-08 14:43:32 +00:00 |
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Philip Eisenlohr
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2f249773c9
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fixed missing Python module
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2014-06-06 15:11:15 +00:00 |
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Philip Eisenlohr
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32b315487c
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removed debug printing
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2014-06-06 14:46:41 +00:00 |
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Philip Eisenlohr
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59e8cd1d7e
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new script: Add data in column(s) of second ASCIItable selected from row that is given by the value in a mapping column
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2014-06-06 14:35:37 +00:00 |
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Philip Eisenlohr
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63c1a0a212
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updated to croaking, scriptID, IO-piping.
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2014-06-06 09:43:28 +00:00 |
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Philip Eisenlohr
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9834c8466c
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scripts to scale, shift, and rotate scalar, vector, or tensor quantities of ASCIItables (in-place!)
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2014-05-27 08:08:10 +00:00 |
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Philip Eisenlohr
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65f1f55a87
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added option to pre-rotate orientation (change lab frame)
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2014-05-26 14:31:42 +00:00 |
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Philip Eisenlohr
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51e7f9eed9
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added --reverse option. corrected help hint regarding sorting order
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2014-05-23 14:05:58 +00:00 |
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Philip Eisenlohr
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06715dc99f
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added "no data check" and updated script backbone to be consistent with other scripts (croak).
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2014-05-19 13:43:26 +00:00 |
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Tias Maiti
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0885ea8023
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changed variable interpolation to be useable in connection with dictionary definitions for formulas. Slightly less efficient but now much more powerful...
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2014-05-02 19:56:56 +00:00 |
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Philip Eisenlohr
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a8a9c8eef5
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added possibility to not sort (--sort none) output by its --separation such that the output can be used in conjunction with the VTK files produced by DAMASK.
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2014-04-14 21:45:24 +00:00 |
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Philip Eisenlohr
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babde13c6a
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capture missing --vtk option
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2014-04-03 01:00:00 +00:00 |
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Martin Diehl
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342ca0be47
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tested new scripts to update shebang, all files got same shebang (and for python files encoding)
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2014-04-01 18:41:14 +00:00 |
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Martin Diehl
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782b54a430
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more LF, Id, and executable status changes
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2014-04-01 17:52:31 +00:00 |
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Martin Diehl
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188002f16e
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more LF, Id, and executable status changes
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2014-04-01 16:58:54 +00:00 |
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Philip Eisenlohr
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16743f8631
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explicitly state unbuffered ASCIIoutput
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2014-03-28 18:15:37 +00:00 |
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Martin Diehl
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0363b1fb04
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updated reporting (according to addCauchy)
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2014-03-10 14:01:39 +00:00 |
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Christoph Kords
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e10f8f1b5e
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corrected typo
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2014-03-04 16:43:22 +00:00 |
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Philip Eisenlohr
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6fd8407d6e
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moved "predefined" to colormap init
cleaned interpolate to not change color model
fixed color range cropping issue
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2014-02-28 16:09:01 +00:00 |
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Philip Eisenlohr
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63569b19b6
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added use of "defaultdict" from collections
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2014-02-28 15:56:28 +00:00 |
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Martin Diehl
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27c83f60a6
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fixed typo
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2014-02-26 15:05:34 +00:00 |
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Philip Eisenlohr
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7f08c976c3
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skip file if mandatory column not found in ASCIItable
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2014-02-26 14:56:06 +00:00 |
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Philip Eisenlohr
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98a8b47a09
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can now read legacy VTK files with unstructured grid data
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2014-02-24 19:23:08 +00:00 |
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Philip Eisenlohr
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a659d071a9
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added '--degrees' option to indicate Euler angles unit
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2014-02-10 18:01:21 +00:00 |
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Philip Eisenlohr
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85e4896478
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"--degrees" option to specify Euler angles in degrees (instead of radians)
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2014-02-09 20:36:42 +00:00 |
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Philip Eisenlohr
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3c2af8e7a6
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fixed dropped file handle when flushing closed output...
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2014-01-29 21:16:44 +00:00 |
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Philip Eisenlohr
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24d7f55f55
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check whether output is already stopped (in command piping for instance)
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2014-01-29 21:13:36 +00:00 |
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Philip Eisenlohr
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cd18ec2abf
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removed unneccesary table.data_rewind, which breaks command piping
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2014-01-29 21:03:56 +00:00 |
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Martin Diehl
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ee99216edc
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polishing compile_CoreModule, bug fix for Makefile
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2014-01-28 07:34:13 +00:00 |
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Philip Eisenlohr
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1bd456aa22
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corrected options.error --> parser.error
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2014-01-27 14:30:37 +00:00 |
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Philip Eisenlohr
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a1cfc85d74
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produce VTK unstructured grid with voxels around all points given in an ASCIItable.
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2014-01-27 14:10:29 +00:00 |
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Philip Eisenlohr
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13fed38a2f
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add scalar and RGB tuples from ASCIItable to existing VTK voxel cloud (*.vtu)
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2014-01-27 14:05:03 +00:00 |
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Martin Diehl
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0f101c8dbf
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adopted to improved HDF5 format
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2014-01-13 16:22:01 +00:00 |
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Martin Diehl
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a614e76968
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first post processing script for HDF5 output
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2014-01-07 20:42:51 +00:00 |
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Philip Eisenlohr
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e20ffb379d
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changed numpy.readtxt logic from "data_asArray" returning a copy to inplace "data_readArray" now directly storing into self.data
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2013-12-14 03:51:22 +00:00 |
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Philip Eisenlohr
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600389ac44
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new script to sort ASCIItable according to (multiple) columns
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2013-12-14 03:48:50 +00:00 |
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Christoph Kords
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0f8790c148
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clarified help string
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2013-12-12 08:48:57 +00:00 |
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Philip Eisenlohr
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10c8a1a3ce
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corrected typo in usage hint
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2013-12-12 02:35:01 +00:00 |
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Philip Eisenlohr
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894776ca67
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fixed stupid bug addressing a dict by dict{key} instead of dict[key]
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2013-12-11 14:30:27 +00:00 |