Harsha Phukan
76171eec15
added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too.
2013-06-27 12:58:12 +00:00
Philip Eisenlohr
8b5ba9f8f0
now understands packed geom-files (much faster processing...)
2013-06-21 21:19:14 +00:00
Philip Eisenlohr
4cf2e75dc1
justification of numbers done with space instead of "0"s
2013-06-21 21:18:10 +00:00
Philip Eisenlohr
e53c67f0e0
added black list for immutable microstructures.
...
now able to parse packed geom-files.
2013-06-21 21:17:03 +00:00
Philip Eisenlohr
3b4573301c
removed now obsolete Moore neighborhood array
2013-06-21 19:10:10 +00:00
Philip Eisenlohr
5d15f68914
added help description.
...
fixed bug for grain index (+1).
renamed some variables and added a few comments.
2013-06-21 19:08:20 +00:00
Pratheek Shanthraj
2e8756b724
faster version of smoother using the scipy gaussian filter to get the diffused microstructure and vectorized sharpening of the diffused microstructure
2013-06-21 16:59:49 +00:00
Philip Eisenlohr
45951e27c5
script to smooth out interface roughness in a (polycrystal) geom
2013-06-20 19:45:25 +00:00
Ding Wang
920195809c
fixed bug in auto determination of size and grid
2013-06-11 10:11:14 +00:00
Martin Diehl
e635b06270
last polishing on preprocessing scripts, documentation and scripts are all up to date.
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added addSchmidfactors to post processing scripts
2013-06-04 12:56:57 +00:00
Martin Diehl
a21dd816c7
init reporting of constitutive_*.f90 had less/to much spaces, renamed label to LABEL because it is a parameter.
...
removed debug output of geom_fromEuclideanDistance.py
2013-05-28 17:31:55 +00:00
Martin Diehl
b3a90a8a3b
last changes on preprocessing tools, only documentation needs to be done
2013-05-17 16:44:03 +00:00
Martin Diehl
17b81fda7c
still improving preprocessing scripts
2013-05-15 17:23:21 +00:00
Martin Diehl
53348db000
tested the modified scripts, all scripts generating geometry now named geom_from...
2013-05-15 16:02:38 +00:00
Martin Diehl
0b4a5cfa9b
geom_check is now using vtk class, other scripts stop execution in case of invalid grid or size
2013-05-14 21:09:37 +00:00
Martin Diehl
9093cf2072
polishing, unifying,simplifying
2013-05-14 17:51:53 +00:00
Martin Diehl
2acd737859
polishing, unifying,simplifying
2013-05-14 17:19:36 +00:00
Martin Diehl
563e74c832
now also using numpy
2013-05-14 17:00:41 +00:00
Martin Diehl
b2c50124b5
more improvements on structure, comments and header generation of pre processing tools
2013-05-13 13:10:31 +00:00
Martin Diehl
52af9aaabf
made spectral preprocessing more verbose (now reporting changes on header) and aware of new keywords, added coding information below shebang
2013-05-13 11:27:59 +00:00
Martin Diehl
a003d14824
grid and size for vicinityOffset, small changes for other scripts
2013-04-25 16:51:32 +00:00
Martin Diehl
5d8664e230
updated to new keywords + more verbosity
2013-04-25 15:53:41 +00:00
Martin Diehl
7cbf107751
removed misplaced new line statement
2013-04-24 11:07:05 +00:00
Pratheek Shanthraj
aa07656a90
exchanged final two occurrences of "grains" to "microstructures"
2013-04-18 13:53:13 +00:00
Martin Diehl
d971a32516
changed keywords, now also printing out altered size/grid/microstructures information
2013-04-16 18:00:14 +00:00
Martin Diehl
2ff0f1b93e
keywords update from resolution/dimension to grid/size
2013-04-12 14:13:32 +00:00
Martin Diehl
b4f67248a5
deleted two simple scripts used for debugging but with almost no use any more
2013-04-12 13:22:15 +00:00
Martin Diehl
7bcf1d6072
added ID information of creator script to header, changed keywords (resolution->grid, dimension->size)
2013-04-12 12:48:39 +00:00
Martin Diehl
4314ab236e
added ID information of creator script to header
2013-04-12 11:15:17 +00:00
Martin Diehl
6f0308844f
geom packing/unpacking won't throw away unknown header information any more (might contain comments)
2013-04-12 10:47:44 +00:00
Martin Diehl
0b1033d63a
switched to new keywords "grid" and "size", still reads the old "resolution" and "dimension" but writes the new ones
2013-04-12 10:27:05 +00:00
Martin Diehl
010d4c6e26
added script to make 27 periodic copies (3 in each dimension)
2013-03-11 13:40:30 +00:00
Martin Diehl
8a66693001
added script to convert data used by R.A. Lebensohn to spectral solver (geom, material.config) format
2013-03-05 16:31:17 +00:00
Philip Eisenlohr
0d7f1e8623
killed "margin" option, now same as all others: resolution and dimension in x and y.
...
can be non-square grid.
2013-02-27 18:43:53 +00:00
Philip Eisenlohr
565c532546
fixed bugs (grain index start, alpha orientation for elliptic osteons).
...
added option to rotate osteon relative to periodic box.
2013-02-27 10:56:30 +00:00
Pratheek Shanthraj
1cc990c7ac
osteon geom and config generator
2013-02-25 17:12:13 +00:00
Martin Diehl
831ad6d9c8
added leading zeros to names of microstructures and phases, spaces caused problems during initialization
2013-02-20 14:50:01 +00:00
Christoph Kords
a90f15a3d3
corrected usage of "append" (which does not copy list items but only creates references)
2013-02-13 16:00:02 +00:00
Martin Diehl
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
...
changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
Philip Eisenlohr
c8aaf8f6d4
added $id flags and specified line ending types when missing.
...
setup script missed ".py" extension for geom_euclideanDistance.
2013-01-18 12:59:26 +00:00
Pratheek Shanthraj
0e93d51fed
adopted same algorithm as in addEuclideanDistance
2013-01-18 11:42:27 +00:00
Pratheek Shanthraj
096204cd79
corrected missing file renaming of output
2013-01-18 11:39:53 +00:00
Pratheek Shanthraj
f63bb747c1
script to calculate the euclidean distance map (shortest distance to a grain boundary) of a given geom description using fast marching method (O(N logN) ops). grain boundary extracted using FD stencil.
2012-11-29 21:53:57 +00:00
Philip Eisenlohr
05507a6240
removed opening of unused _tmp file
2012-11-27 17:59:56 +00:00
Martin Diehl
b5945ced5e
changed counting of rows from pythonic (starting at 0) to human way (starting at 1)
2012-11-20 10:27:09 +00:00
Philip Eisenlohr
1df9be233d
changed default threshold to 0.0
2012-11-08 17:08:41 +00:00
Philip Eisenlohr
025d6c9048
renamed script to new convention
...
aligned output behavior to that of fromVoronoiTessellation, i.e., standard output is geom, --config gives associated material.config stud
2012-11-08 15:44:51 +00:00
Philip Eisenlohr
af2aa8500d
added option to specify crystallite index
2012-11-08 15:43:38 +00:00
Philip Eisenlohr
c4c27860b2
renamed script
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updated to recent standard in io processing
introduced "primitive" bicontinuous structure in addition to "diamond" and "gyroid"
2012-11-07 16:52:10 +00:00
Philip Eisenlohr
7cf2024be3
fixed buggy parameter checking
2012-11-07 16:51:17 +00:00
Philip Eisenlohr
e11d107956
fixed reporting to STDOUT/STDERR
...
fixed buggy parameter checking
2012-11-07 16:49:47 +00:00
Philip Eisenlohr
cfc8823328
missed those three in former commit...
2012-11-05 21:28:01 +00:00
Philip Eisenlohr
1bd4262cfb
renaming of (loosely related) "spectral" scripts to (more tightly related) "geom" versions.
2012-11-05 21:19:12 +00:00
Philip Eisenlohr
afaf1f4e8c
made errors report to STDERR.
...
maxMicrostructure remains silent if not present.
2012-10-30 16:32:00 +00:00
Philip Eisenlohr
f2229883b5
exchanged "maxGrainCount" for "maxMicrostructure", since this is what it really means...
2012-10-30 16:15:10 +00:00
Philip Eisenlohr
ff164c9209
changed packing syntax from "N copies of x" to "N of x" (now consistent with IO.f90)
2012-10-30 15:53:46 +00:00
Philip Eisenlohr
2d36d52cf7
changed packing syntax from "N copies of x" to "N of x" (now consistent with geomPack and IO.f90)
2012-10-30 15:47:11 +00:00
Philip Eisenlohr
17bfc3b284
added explanation of script purpose to its usage output (-h)
2012-10-18 07:24:44 +00:00
Martin Diehl
124451ac1a
added missing comment sign #
2012-10-04 08:42:13 +00:00
Martin Diehl
0a961bef55
made test for spectral packing/unpacking working again, small fixes in the 2 scripts
2012-09-28 14:49:07 +00:00
Philip Eisenlohr
5dbbb56460
fixed bug in 2D output format alignment.
2012-09-13 12:28:21 +00:00
Martin Diehl
77b2eef269
corrected wrong compiler option for gfortran in setup and updated naming scheme
2012-09-13 12:20:00 +00:00
Philip Eisenlohr
b76fee325b
script to shift (physical) origin of geometry file and/or shift microstructure indices by fixed amount and substitute individual indices by other ones.
2012-09-13 10:12:00 +00:00
Philip Eisenlohr
66e38606f0
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:09:54 +00:00
Philip Eisenlohr
1c0649e17a
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:08:57 +00:00
Philip Eisenlohr
8078585ce8
removed two left-over debug statements
2012-09-13 08:46:18 +00:00
Philip Eisenlohr
3d14c5b234
functionality now subsumed into geomCanvas
2012-09-13 07:58:29 +00:00
Philip Eisenlohr
4263191423
functionality now subsumed into geomCanvas
2012-09-13 07:57:57 +00:00
Philip Eisenlohr
1fe202fd90
added $ID and line endings.
2012-09-13 07:56:45 +00:00
Philip Eisenlohr
4f6e0eda32
splitter geom-file un/packing into two separate scripts.
2012-09-05 15:15:11 +00:00
Martin Diehl
a94b089aaa
removed old fortran brute force based tessellation
2012-07-26 09:07:24 +00:00
Philip Eisenlohr
783e1b50e2
condensed info parsing.
...
added info to report new origin of grid (based on --offset).
2012-06-26 18:08:50 +00:00
Philip Eisenlohr
fd3d592333
added capability to respect "origin" information in header
2012-06-26 18:07:38 +00:00
Philip Eisenlohr
cd04f990c5
added $id$ property and LF ending
2012-06-26 17:20:16 +00:00
Philip Eisenlohr
9041c5de39
fixed help texts
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killed full number range output option (use spectral_geomPack if needed)
2012-06-26 14:41:25 +00:00
Martin Diehl
2b5ff6a456
2 small corrections for header of geom file
2012-06-26 10:41:22 +00:00
Pratheek Shanthraj
77ee33ec1f
script to changes the (three-dimensional) canvas of a spectral geometry description
2012-06-21 12:57:14 +00:00
Philip Eisenlohr
01a9290567
deleted old incarnation...
...
new script follows established option parsing.
can rescale (increase only) the number of grid points in any dimension (with or without concurrent dimension scaling).
2012-06-20 16:00:48 +00:00
Philip Eisenlohr
1105824562
new option to not rescale patch (set size = 0)
...
added "3 header" to file output
will now extrude for spectral grids
2012-06-20 15:58:43 +00:00
Philip Eisenlohr
dfc8606207
boundary conditions now consider patch dimension along pulling direction (used to be orthogonal to that..!)
2012-06-13 09:28:59 +00:00
Taymor El Achkar
1c427e8642
loop corrected
2012-05-14 07:58:21 +00:00
Taymor El Achkar
542768d712
bug fixed
2012-05-11 08:36:42 +00:00
Taymor El Achkar
c962452cda
python version of voronoi_tessellation.f90 generating geom file and material_config file (using kd_tree nearest neighbor search)
2012-05-10 16:42:07 +00:00
Taymor El Achkar
0cb983606f
spectral_geomPack is now formatting depending on necessary digits (via additional header information)
2012-05-02 13:44:12 +00:00
Philip Eisenlohr
b87b2160e7
fixed bug occurring for one item lines.
...
shortened logic here and there.
2012-04-25 13:53:56 +00:00
Martin Diehl
99f2b8603a
new script for reconstruction of elements from F/IP(spectral_buildElements.py), corrected spectral_randomSeeding.py, made post/postResults.py aware of additional header/footer for file positions larger than 2**31-1
2012-04-24 15:09:20 +00:00
Taymor El Achkar
f74b16051b
autodetection of line length for geomPack, updated description for both files
2012-04-24 11:31:18 +00:00
Taymor El Achkar
14356bf35e
new pre processing script for interpretation of "copies of" and "to" in geom files
2012-04-23 12:46:38 +00:00
Martin Diehl
31753be16f
updated setup/setup_processing.py with new files
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added data_readLine(LINE) and data_skipLines(LINES) for ascii table
2012-04-18 11:42:57 +00:00
Martin Diehl
17f644b261
new scripts to add deformed configuration to ASCII table and for generation of layered 2D geometries (EBSD)
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addCompatibilityMismatch.py is now using functions from ASCII table library
2012-04-18 09:58:59 +00:00
Martin Diehl
a3b37356be
added svn flags
2012-03-31 12:42:49 +00:00
Martin Diehl
c29ae95af7
new version of AL spectral solver (seems to work, but still experimental)
...
new concept of DAMASK for Python: Now using also IO.f90, debug.f90 etc. instead of mimicing their necessary function. This needs DAMASK_python.f90 and DAMASK_python_interface.f90 (At the moment more or less copies of respective spectral files).
polished and renamed the scripts for converging ang files
renamed voronoi_randomSeeding.py to spectral_randomSeeding.py
2012-03-29 19:54:31 +00:00
Pratheek Shanthraj
30d38436c7
switched voronoi seeding to python
2012-03-29 16:41:23 +00:00
Martin Diehl
4a6cdcc2e2
moved and renamed tools for generating geom file from ang files. using python instead of c++ for hex2cub conversion
2012-03-27 17:47:39 +00:00
Martin Diehl
3816adac27
removed batch processing (easier done on command line) and changed interactive question for filename to cmd argument
2012-03-21 17:58:11 +00:00
Nan Jia
d2051e54a5
PBC meshing can work on 2D models
2012-03-14 13:40:22 +00:00
Christoph Kords
95a2ed3443
added ability to add "damask option" to input file
2012-03-13 14:08:09 +00:00
Martin Diehl
d68a3d1869
added LF=UNIX to a bunch of files
2012-02-22 13:30:00 +00:00
Philip Eisenlohr
ae6abedee7
set makefile line endings.
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small output polish in patchFrom...
2012-01-16 16:06:41 +00:00
Philip Eisenlohr
447e181f55
fixed rounding problems with nodal coordinates
2012-01-16 16:05:02 +00:00