Commit Graph

866 Commits

Author SHA1 Message Date
Martin Diehl ba5b623f14 Merge branch 'development' into improved-HDF5 2018-11-18 19:44:36 +01:00
Martin Diehl fcb14f6099 was never used 2018-11-18 12:04:08 +01:00
Martin Diehl 8ee2de61ea map returns no list any more 2018-11-17 12:12:20 +01:00
Martin Diehl 257d9d5350 needs to be list 2018-11-17 12:12:20 +01:00
Martin Diehl 44bd85a041 not working for python3, trying 2018-11-17 12:12:20 +01:00
Martin Diehl e1a730e96b python3 compatible integer division and argument sequence in agreement with documentation 2018-11-17 09:58:54 +01:00
Martin Diehl 558745b548 explicitly require python3
on older systems, python3 tpyically exists but python2 is the defaul
2018-11-17 08:12:12 +01:00
Martin Diehl 4ffb4a4321 fixed several typos 2018-11-16 19:28:24 +01:00
Martin Diehl 26811b74d6 known to work with python3 2018-11-16 09:18:29 +01:00
Martin Diehl a3647cc587 more files with confirmed python3 compatibility 2018-11-16 09:03:12 +01:00
Martin Diehl f47891e292 booleans not allowed as indeces any more 2018-11-16 09:03:12 +01:00
Martin Diehl fe2c7efa27 seem to work 2018-11-15 13:56:48 +01:00
Martin Diehl 8f80152a03 use floor division of integers
1/2 = 0.5 in python3 (would be 0 in python2)
2018-11-15 12:28:36 +01:00
Martin Diehl efd29e62f7 verbose should be optional
- causes problems on many systems (screwed up output)
- does not work with python 3 since threading class has changed
2018-11-15 12:16:55 +01:00
Philip Eisenlohr 0cbcb028aa fixed problem with "ValueError: Mixing iteration and read methods would lose data" for string-containing tables 2018-10-21 15:39:30 -04:00
Martin Diehl 7480d1a842 fixes for Python3 2018-10-19 07:35:59 +02:00
Martin Diehl 2632be2a76 polishing 2018-07-20 03:09:53 +02:00
Martin Diehl 1f637a0c49 python3 compatible map requires conversion to list 2018-07-19 18:01:38 +02:00
Martin Diehl 0438b7113a using util function where possible, ensuring python3 compatibility 2018-07-19 16:38:25 +02:00
Martin Diehl f928bd5e5b more python 3 compatibility 2018-07-19 16:26:30 +02:00
Martin Diehl 35e470ff4d needed for python3 2018-07-19 16:19:05 +02:00
Martin Diehl 9821654aae iteritems does not exist in python3 anymore
items also works for python2 (might be slower though)
2018-07-19 16:16:10 +02:00
Martin Diehl d138993c1d using util functionality to be compatible with python3 2018-07-19 16:12:36 +02:00
Martin Diehl aadcd61824 polishing 2018-06-18 00:05:55 +02:00
Martin Diehl 1bbaa7cefe reverted last commit, scipy.linalg is different from numpy.linalg 2018-02-26 23:50:44 +01:00
Martin Diehl 6046a7ae3d there is no scipy.linalg (at least on my system)
numpy.linalg is automatically imported together with numpy
2018-02-26 20:22:57 +01:00
Philip Eisenlohr b078234644 added scipy and scipy.linalg as known modules for calculations 2018-02-25 14:19:22 -05:00
Philip Eisenlohr e304ce35da forgot to rename function call to read "coordGridAndSize" 2018-01-30 12:58:43 -05:00
Philip Eisenlohr 355d576b4d shortened code with utility function coordGridAndSize 2018-01-30 09:20:47 -05:00
Philip Eisenlohr 710970d728 updated option --label for addCurl/Div/Grad 2018-01-29 21:27:05 -05:00
Philip Eisenlohr 1d71a52133 further simplifcation of scripts 2018-01-29 15:10:41 -05:00
Philip Eisenlohr b45b43c5ac bug fix in addCurl, simplified scripts 2018-01-29 14:12:19 -05:00
Philip Eisenlohr 622d038932 einsum now compatible with numpy 1.14 2018-01-29 09:18:05 -05:00
Philip Eisenlohr 30272fc355 generalized addCurl with --data instead of --tensor and --vector 2018-01-28 18:25:50 -05:00
Philip Eisenlohr 8fb127f31c better description of activity 2018-01-28 18:08:02 -05:00
Philip Eisenlohr 761670f218 generalized addGradient with --data instead of --scalar and --vector 2018-01-28 18:02:35 -05:00
Philip Eisenlohr 532d669d33 switched to more robust line based output 2018-01-27 17:45:53 -05:00
Brendan Vande Kieft ceb0ff09e6 Subdivide vertex data with geometry when converting Marc input to VTK 2018-01-15 17:20:24 -05:00
brendanvk a03bb1ec3e Add MSC.Marc to VTK conversion support
marc_to_vtk.py takes Marc input file, subdivides it and creates a
vtkUnstructuredGrid .vtu file with the resulting geometry.  Currently
supports hexahedron elements.

vtk_addGridData.py adds nodal/cell data to some VTK grid.  It is
essentially vtk_addRectilinearGridData with support for unstructured
grid (.vtu) format, which is marc_to_vtk.py's output.
2017-12-11 12:32:38 -05:00
Philip Eisenlohr c33655b479 fixed pyflakes issues 2017-11-28 11:14:22 -05:00
Philip Eisenlohr 0c8c4b54aa Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2017-11-28 11:12:05 -05:00
Philip Eisenlohr 3b96fac8bd added script to calculate numerical derivative of ASCIItable data 2017-11-28 10:59:53 -05:00
Martin Diehl 4dfb52c792 unfinished HDF5 should not be part of the next release 2017-11-21 10:23:50 +01:00
Martin Diehl eda8c24b7d Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2017-10-07 17:24:59 +02:00
Philip Eisenlohr 14c1291046 added "--quiet" option to suppress online messaging 2017-10-03 14:03:50 -04:00
Tias Maiti f46d721750 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2017-09-03 17:42:02 -07:00
Philip Eisenlohr 64259d9239 bug fixed in whitelist sorting, more robust against numpy parsing errors 2017-08-28 19:38:14 -04:00
Philip Eisenlohr 5b8bc65d37 exchanged string 'n/a' for 'nan' to allow smooth parsing as float value 2017-08-28 19:32:59 -04:00
Philip Eisenlohr 9e5896a6c5 large speedup (10x) for unconditional filtering by using read/writeArray 2017-08-23 20:54:02 -04:00
Philip Eisenlohr fc4fb43d48 aborting when NO data columns found 2017-08-23 17:53:30 -04:00
Philip Eisenlohr e82df723d1 added Rodrigues vector as possible input format 2017-08-23 14:10:56 -04:00
Philip Eisenlohr b3ac200c17 report linking column in screen output 2017-08-23 14:10:22 -04:00
Philip Eisenlohr 255a465e8b sharpened error detection and reporting 2017-08-16 15:18:29 -04:00
Philip Eisenlohr e18c2fd74c slight layout tweak 2017-08-16 12:52:46 -04:00
Philip Eisenlohr 91c70fc823 sharpened error detection and reporting 2017-08-16 12:51:32 -04:00
Philip Eisenlohr a2947789b5 clarified help and reporting 2017-08-15 16:12:06 -04:00
Martin Diehl 95c0179945 labeling vectors and values independenty in addSpectralDecomposition 2017-08-13 02:14:34 +02:00
Philip Eisenlohr e6cc948ddf added vector-valued conditions and cleaned obsolete code 2017-08-11 15:19:47 -04:00
Zhuowen Zhao b7d4b3d190 simplified internal handling of conditions and added vector capability to it 2017-08-11 11:56:27 -04:00
Tias Maiti 3860eecb7c Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2017-08-10 11:09:37 -04:00
Martin Diehl cb62066667 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2017-07-31 23:00:24 +02:00
Philip Eisenlohr 68493a00f5 fixed PEP line continuation warning 2017-07-31 10:04:04 -04:00
Philip Eisenlohr c8222d6f82 Merge remote-tracking branch 'origin/development' into development 2017-07-31 09:51:10 -04:00
Philip Eisenlohr 837b14592a addLinked can now link between vector-valued columns 2017-07-31 09:34:30 -04:00
Unknown 269eacb11d added flag for skipping right-handedness check of eigenvector basis
separate names for min,mid,max eigvals and vecs
2017-07-28 13:44:17 -04:00
Martin Diehl 6547ab8c69 not needed, ASCII table ensures shape (Npoints,Nvalues) 2017-07-05 04:43:20 +02:00
Martin Diehl f085f61c4d testing hook that checks for executable bit 2017-06-02 09:25:58 +02:00
Martin Diehl 6599f7299d correct description 2017-06-01 10:00:29 +02:00
Martin Diehl e5af0630fe gaussian filter (wrapper no ndimage) 2017-05-29 10:33:05 +02:00
Philip Eisenlohr 66b4e24ab7 solver.Marc.version has no argument anymore 2017-03-20 15:13:54 -04:00
Philip Eisenlohr 746cb9c306 nicer code layout 2017-01-19 15:10:38 +01:00
Philip Eisenlohr c80b02dd72 avoid reporting "none" as STDIN filename 2017-01-19 15:10:17 +01:00
Philip Eisenlohr 814b05e2f6 renamed to hopefully clearer express functionality 2016-11-29 16:30:24 -05:00
Philip Eisenlohr 0f04ddd88e polishing of whitespace, usage help, etc. 2016-11-29 14:44:34 -05:00
Philip Eisenlohr 43c1880195 fixed periodic averaging to work with multi-dimensional data
option --periodic now takes list of labels that undergo periodoc domain averaging, i.e. incompatible to former API!
2016-11-29 14:44:06 -05:00
Philip Eisenlohr 231f05e142 corrected bug that added index column values as first output 2016-11-29 11:16:50 -05:00
Philip Eisenlohr c9ec2e0f46 New table mapping based on shared column values
renamed old addMapped to addRowMapped to better reflect true functionality.
2016-11-29 09:33:35 -05:00
Martin Diehl 873c52cceb using 3 way merge to have syntax as similar as possible 2016-11-07 19:51:12 +01:00
Chuanlai Liu 551b4369a1 improved readability 2016-11-07 09:06:35 +01:00
Chuanlai Liu d35c9dd431 using Einstein sum to replace 'for loop' 2016-11-04 18:50:39 +01:00
Philip Eisenlohr 94fcc9ad24 fixed language and syntax 2016-10-31 10:40:58 -04:00
Martin Diehl 99dc75c2fd proper capitalization 2016-10-25 21:53:32 +02:00
Martin Diehl 8a94f55a2e python 3 compatibility 2016-10-25 06:44:12 +02:00
Martin Diehl a84e7310f5 fixed prospector hints 2016-10-24 20:30:51 +02:00
chen 96349ebf53 add log to each dataset 2016-10-17 18:24:47 -04:00
chen 703ae3c6d6 add script for adding von Mises equivalent to HDF5 file 2016-10-17 17:29:44 -04:00
chen 4d849219f7 will come back for this later 2016-10-17 16:59:42 -04:00
chen 8e7f0c255b fix some syntax error 2016-10-17 16:58:04 -04:00
chen 74b29881f3 strain tensor calculation script for HDF5 2016-10-17 16:24:11 -04:00
chen 1a2194f042 remove useless functions 2016-10-17 16:23:21 -04:00
chen fb1e4f0c39 add IPF color tuple for HDF5 file 2016-10-17 12:24:29 -04:00
chen b04c5801a5 syntax polish 2016-10-14 14:38:09 -04:00
chen 0a35761636 delete unused module 2016-10-14 14:33:22 -04:00
chen dfb49c3138 as script for calc Cauchy stress in HDF5
no safe net in the script, following 'let-it-fail' design
2016-10-14 14:32:20 -04:00
chen fd4b495de2 adding interface for addCalc with HDF5 2016-10-14 14:30:46 -04:00
chen 05a3b569fc adding parallel version of addCalc for H5 table 2016-10-14 12:26:46 -04:00
chen 33de9cf2b9 script for adding data from HDF5 to vtk file 2016-10-14 12:06:59 -04:00
chen 1f01dce862 use 4 space indentation 2016-10-14 12:06:09 -04:00
chen 2f2490e784 remove unused import 2016-10-14 10:48:08 -04:00
chen e5e2eef375 add script generate vtr file from HDF5
following "let-it-fail" design
2016-10-14 10:45:42 -04:00