fd4b495de2
adding interface for addCalc with HDF5
2016-10-14 14:30:46 -04:00
05a3b569fc
adding parallel version of addCalc for H5 table
2016-10-14 12:26:46 -04:00
33de9cf2b9
script for adding data from HDF5 to vtk file
2016-10-14 12:06:59 -04:00
1f01dce862
use 4 space indentation
2016-10-14 12:06:09 -04:00
2f2490e784
remove unused import
2016-10-14 10:48:08 -04:00
e5e2eef375
add script generate vtr file from HDF5
...
following "let-it-fail" design
2016-10-14 10:45:42 -04:00
353b5b6994
avoid doctring as argument
2016-10-14 10:42:03 -04:00
9ac3f564c8
syntax fix
2016-10-13 13:45:25 -04:00
8cdc7c0b10
add xdmf wrapper generator for HDF5
...
Not recommended for large dataset due to potential memory leak currently plaguing Xdmf ilbrary.
2016-10-13 13:41:04 -04:00
ec59dfeec0
do not reshape data
...
since xdmf is not stable right now, there is no need to reshape the data to tie it to the mesh. comment them out for future reference
2016-10-13 13:22:37 -04:00
ace06fd0e1
skip dulplicated columns in ascii table
...
also add a todo list at the top
2016-10-13 11:33:38 -04:00
c311ac47ca
force using rectangular mesh
...
Paraview cannot handle large number of polyvertices using xdmf, forcing a meshed structure to by pass the problem.
2016-10-12 20:20:15 -04:00
ffcfe67c73
remove debug output, fix name handling error
2016-10-10 09:46:11 -04:00
7278605004
fix naming error
2016-10-09 19:13:44 -04:00
6450cb3003
fix syntax error
2016-10-09 19:12:45 -04:00
6eb111dc7c
add script convert ASCII table to HDF5
...
using H5Table
2016-10-09 19:01:38 -04:00
4e8bd83d4b
syntax error fix
2016-10-07 15:32:10 -04:00
f3308dbef6
replace scalar/vector option with data
...
vtk does not care 1D data array length
2016-09-14 19:59:26 -04:00
ae16ccae61
need to use deep copy when converting np array to vtk array
...
for batch array conversion, it is necessary to use the deep copy to ensure numpy_support.numpy_to_vtk works as it should.
2016-09-14 15:06:00 -04:00
53d2df6058
vector support 1D vector with arbitrary lenght
...
simple hack to bypass the size check for vectors since vtk does not care the vector size.
2016-09-14 12:37:07 -04:00
77729f39e3
commenting last commit
2016-09-11 14:41:48 +02:00
06405bc251
fixed coordinate system convention to be right handed always instead of random left and right handed assignment
2016-09-10 16:39:25 -04:00
2daad7542e
added option for periodic averaging
2016-09-10 16:39:25 -04:00
ee322be870
use np.histogram2d, fixed list.append bug when using weight column
2016-09-09 16:17:00 -04:00
8c4767d58c
syntax fix
2016-09-09 07:28:54 -04:00
017c08a7bb
syntax fix
2016-09-09 07:28:31 -04:00
da538fbce9
speed up of VTK data transformation
2016-09-08 18:05:49 -04:00
a2f3839ca8
add missing numpy import
2016-09-02 14:37:15 -04:00
d9077805e4
Forced symetric tensor when adding tensor to vtk
...
VTK addTensor by default using the lower triangle to populate its tensor object. Enforcing the tensor to be symmetric to avoid necessary confusion when adding data (most stress/strain tensor should symmetric by default, so it should not affect the results)
2016-09-02 09:30:49 -04:00
20d1164e5d
add tensor support for vtk_addRectlinearGridData
2016-09-01 16:57:29 -04:00
6db0a42eae
addvtk data now support tensor type (9 components)
2016-09-01 12:47:26 -04:00
4b02a55f4d
explicit type casting from boolean to int
2016-08-30 16:08:47 -04:00
891ac4d585
fixed comma syntax error
2016-08-25 12:17:27 -04:00
55d6adf1b8
renamed to reflect more general nature of script
2016-08-25 12:15:41 -04:00
85abf84186
generalized to user-specified mapping function instead of hardwired avg
2016-08-25 12:15:03 -04:00
64ac05fc26
removed left-over debug output
2016-08-11 14:24:40 -04:00
600731b15c
modernized, gracefully add NaN for out-of-bounds mapping
2016-08-11 14:23:29 -04:00
6c82641713
added defaults (bugfix)
2016-08-01 16:43:14 +02:00
fa3387486d
clarified meaning of possible (global) rotation (lab/crystal frame)
2016-07-31 19:35:10 -04:00
79ff040426
sorting and clarification of help, shortening of output labels
2016-07-30 15:07:44 -04:00
23a57ec78f
reinstalled "NOQA" keyword for "import math"
2016-07-30 12:52:49 -04:00
ab3415d44e
polishing and rearrangement of code snippets
2016-07-30 12:46:00 -04:00
c3650a1b00
shebang got reverted
2016-07-30 08:20:57 +02:00
6a80c71c0b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-07-29 20:42:38 -04:00
304fdf1ebe
can deal with "veterans" and "newbies" meaning over ride existing with new
2016-07-29 20:41:15 -04:00
0bbf54e0e4
switched to string.format() method
2016-07-29 17:49:29 -04:00
afff0b8614
fixed STDOUT error
...
no files on command line translate to "filename" being empty list. Cannot test for filename[0] then...
2016-07-29 17:48:40 -04:00
4d01e826c5
fixed typo in usage msg
2016-07-25 00:46:11 -04:00
03bb0b8a98
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-18 19:36:47 +02:00
cd63a92733
using python 2.7 has shebang will also work on mac without symlink
...
unless someone uses the 6 year old python 2.6, this should be save
2016-07-18 19:35:35 +02:00
0a2d5e4c2a
add missing newline to header for postResult
2016-07-18 12:29:12 -04:00
325e153d3d
import of string not needed
2016-07-18 11:22:53 +02:00
e3f83b6d66
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-07-18 11:22:12 +02:00
1b30b186f4
rootRelation keyword was still used
2016-07-18 06:17:22 +02:00
0c2b7782d4
reporting correct ID
2016-07-17 18:18:57 +02:00
745c012088
fully adopted code from addDisplacement
2016-06-29 20:09:42 +02:00
f04b737e4c
Merge remote-tracking branch 'origin/development' into NoCoreModule
2016-06-29 16:11:07 +02:00
2c8427eb2a
seems to work now
2016-06-29 12:35:50 +02:00
9bf8b6221c
fixed fluct displacement
2016-06-29 12:11:07 +02:00
a64388355a
simplified
2016-06-29 11:02:49 +02:00
9ea6d3afd7
simplified FFT statements
2016-06-29 10:58:15 +02:00
af2404f0f8
no access out of bounds anymore (but incorrect results)
2016-06-27 23:27:30 +02:00
8307a4a9ab
trying to get the last things work without the core module
2016-06-27 19:38:12 +02:00
259ee072a6
Merge branch 'development' into NoCoreModule
2016-06-27 15:35:46 +02:00
b40cbd68bb
"-"sign caused reversed deformation mode
2016-06-27 15:19:02 +02:00
aa9a8b21c7
lables is now a method, not an attribute
2016-05-18 18:31:54 +02:00
be99018ce3
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-05-18 18:28:57 +02:00
a8765a963d
more fixing of old .labels use
2016-05-17 11:12:26 -04:00
66e06cf61f
shebang for python2 got lost
2016-05-17 16:41:38 +02:00
9103ee544b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-05-17 09:52:18 -04:00
fa3d8fa460
adopted description/simplified
2016-05-17 11:05:50 +02:00
8d6c601a45
fixed python flake complaints.
2016-05-16 20:17:17 -04:00
8e01247597
merged functionality of fillTable (change existing column values) into addCalculation. If labels already exist, they are altered. Otherwise, new columns are appended.
2016-05-16 20:06:13 -04:00
515b8ee457
reworked use of "labels" property to proper methods for access.
2016-05-16 19:55:06 -04:00
49b02ac1f2
label name inline with current scheme
2016-05-13 22:46:03 +02:00
fa5ebdd46b
added correct metavar
2016-05-13 09:43:56 +02:00
ba6889a54f
removed debug statement
2016-05-11 10:04:55 -04:00
0da55113f9
not needed anymore
2016-05-11 11:44:24 +02:00
a21e8cd863
usind explicitly python2 to run in environments with python 3 as default
2016-05-11 11:01:39 +02:00
5089d86b3d
sorting labels are now optional. uses existing labels (from left to right) for sorting if none specified.
2016-04-28 20:28:45 -04:00
d3a7ceff15
fixed serious bug regarding wrong reshaping order (was 'C' now 'F') of 3dim to 1dim and back.
2016-04-28 13:25:46 -04:00
426658eb36
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-27 09:28:51 -04:00
b3e9877058
changed from "coords" to "pos"
...
remind user about (creating a new) nodal output file
2016-04-27 09:28:43 -04:00
d497503411
renamed options.coords/options.coordinates consistently to options.pos
2016-04-26 22:49:58 +02:00
0f0ca8cd71
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-25 10:24:30 -05:00
c67fbe7653
distinguished between singular and plural in remark
2016-04-25 10:23:08 -05:00
c30c7714ad
hickup, probably from merge
2016-04-25 14:11:27 +02:00
26e5f97ff3
missing comma
2016-04-25 13:22:34 +02:00
2eb7ad7432
polishing
2016-04-25 12:59:15 +02:00
7ce208019c
Merge branch 'development' into miscImprovements
2016-04-25 12:36:02 +02:00
469ec4b00e
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-25 12:33:06 +02:00
e8afd57536
seems to work
2016-04-25 08:40:36 +02:00
26f437b507
fixed pointcloud issues for vtk < 7.0 (going back to old, non-XML format)
2016-04-25 08:28:00 +02:00
34aa11f197
finishing half-done renaming
2016-04-24 22:50:41 +02:00
88548cbb87
accidentally copied wrong writerType. now rectilinear...
2016-04-24 13:22:06 -05:00
8c0b0351cd
renamed "coordinates" option to "position". small additional polishing.
2016-04-24 13:12:18 -05:00
10e31e489a
new script to add arbitrary lines to ASCIItable header
2016-04-24 13:10:25 -05:00
b2b5f6b68c
removed useless check for croaking
2016-04-24 13:00:57 -05:00
219d489df4
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-24 12:35:17 -05:00
94933514a1
removed "legacy" option. STDOUT reports most modern format available (ASCII XML for point cloud, VTK for rectilinear grid).
2016-04-24 12:34:01 -05:00
bd23f979f4
also not needed anymore
2016-04-24 19:27:19 +02:00
ac9a9cb6ac
scripts deemed useless
2016-04-24 18:56:13 +02:00
648c2dd1d3
Only read position coordinates for grid detection. Needs data_rewind before writing of (condensed due to readArray) head.
2016-04-24 09:22:07 -05:00
3b53d1bc82
polished option help messages
2016-04-22 14:20:36 -05:00
dffa119724
Added explicit option to force geom input format.
...
Added option to output legacy format.
Possible bug in VTK presently prevents XML output to STDOUT... (Have filed issue to VTK developers.)
2016-04-22 14:02:07 -05:00
57acaba63e
Missed out on putting the if..else statement as a bracketed group in a former commit. Next try of getting rid of {True: a,False: b}[choice] style...
2016-04-22 13:19:32 -05:00
382727f2d6
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-04-22 13:13:42 -05:00
a1927f84c4
renamed "coordinates" option to "position".
...
added explicit choice to write out as legacy format.
2016-04-22 13:09:23 -05:00
a3da663931
piping was broken
2016-04-22 17:59:50 +02:00
c57c76085f
missing labels
2016-04-21 15:41:35 +02:00
28423d4b45
increment information got lost
2016-04-21 11:31:02 +02:00
8ec9243016
new label name
2016-04-21 11:06:39 +02:00
13e214fe18
added support for legacy VTK format
2016-04-18 15:08:29 -04:00
0bc7f36ee5
added (transparent) capability to deal with geom files.
2016-04-18 14:49:11 -04:00
81f6530f52
changed default label of coordinates to "pos"
2016-04-15 18:27:23 -04:00
7567aae7c0
now deals with 1D, 2D, 3D. speed up of grid detection. "pos" as default coordinate label.
2016-04-15 18:25:56 -04:00
8ac40ced5a
coordinates of nodal or cell-centered values are always labelled "pos"
2016-04-15 18:23:35 -04:00
cbe9afb2b3
removed --mode option. script figures on its own.
2016-04-15 14:06:01 -04:00
3474800db1
switched coordinates default from "ipinitialcoords" (ugh) to "pos"
2016-04-15 14:04:10 -04:00
f040842ed4
superseded by addDisplacements
2016-04-15 07:41:55 -04:00
01ba11448c
small polishing of remark output regarding <3D vectors
2016-04-15 07:41:24 -04:00
91753d5322
more style related changes
2016-04-15 00:35:21 +02:00
5682d8f627
also not needed
2016-04-15 00:11:03 +02:00
6aa6b418ea
not needed (Philip has different names)
2016-04-15 00:08:01 +02:00
573d10f1e1
Merge branch 'development' into NoCoreModule
2016-04-15 00:05:38 +02:00
dbfd107b48
Add deformed configuration of given initial coordinates.
...
Operates on periodic three-dimensional x,y,z-ordered data sets.
Replaces 3Dvisualize..!
2016-04-14 17:53:48 -04:00
170d377092
much improved algorithm to speed up grain identification.
2016-04-13 19:36:24 -04:00
1994b5a4c1
removed debug messages
2016-04-13 19:29:04 -04:00
ea0bc80af9
modernized to reflect rectilinearGrid processing. Now supports vector data and in-place adding.
2016-04-13 18:03:40 -04:00
0b09ce31db
changed coordinate option to be consistent with rectilinearGrid.
2016-04-13 17:49:48 -04:00
feae2164fc
polishing and now explicitly closing input table.
2016-04-13 17:48:49 -04:00
6e2ca7d595
Removed hard requirement of 3D dataset. Fills in necessary dimensions.
2016-04-13 17:48:17 -04:00
70afa462b2
should work now with odd resolution as well
2016-04-11 20:25:24 +02:00
82063494fd
adopted to new json format of paraview
...
introduced "standard" colormaps for stress, strain, and orientation
file is now implicit the first argument without key (in line with other scripts)
2016-04-11 19:47:07 +02:00
f483c6a404
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-11 16:06:00 +02:00
d278d86f9d
long line
2016-04-11 13:24:43 +02:00
b1d714581c
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-04-10 15:40:52 +02:00
3e6d2710a3
added option to report probability density
2016-04-05 16:18:34 -04:00
e9ec497da6
fixed bug preventing files specified with full path to be treated properly
2016-04-05 16:17:55 -04:00
fcddf9345e
added option for non-uniform weights
2016-03-27 17:54:49 -04:00
7c72ede29d
now works properly for labels specified as index (instead of string)
2016-03-27 16:29:45 -04:00
0d93a47c71
Generate histogram of N bins in given data range.
2016-03-27 13:34:19 -04:00
7423c1a06a
not needed anymore
2016-03-24 18:47:11 +01:00
ea28bc8f06
restored script for calculation of nodal positions
2016-03-24 16:19:49 +01:00
8b89063113
less core module
2016-03-24 14:19:00 +01:00
60a3ac5b04
copied fortran code
2016-03-24 12:35:33 +01:00
022b089fa7
cleaned core module related stuff
2016-03-24 11:49:23 +01:00
4592db8dfb
added python based geometry reconstruction
2016-03-24 10:37:15 +01:00
809f03bef5
new printing for python3 and corrected help
2016-03-23 17:02:51 +01:00
0840a5f42e
modernized orientation treatment and adopted slip systems from lattice.f90
2016-03-22 20:52:02 -04:00
fafedd5cd6
Merge branch 'LargeFiles' into development
2016-03-22 15:45:42 +01:00
e39441f36b
corrected usage message to tell about string comparison in filter condition
2016-03-17 19:02:30 -04:00
36c703ecd3
shortened excessively long lines
2016-03-16 15:20:31 -04:00
3a267dc7ff
FFT-based gradient calculation of scalar or vector field data (sibling of addCurl and addDivergence)
2016-03-16 15:02:38 -04:00
ce26ad06da
polishing and introduction of locally derived grid in FFT subroutine
2016-03-16 15:01:22 -04:00
6197e839c9
fixed missing file extension when adding in-place
2016-03-15 14:52:10 -04:00
f857353e16
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-11 12:49:47 +01:00
b0dedb8cbd
=addOrientation can do the same (and more)
2016-03-09 19:02:28 +01:00
b933359f17
clarified text of error message complaining about wrong input dimension
2016-03-09 12:28:36 -05:00
93d7643875
no long lines anymore and prospector is also happy
2016-03-03 14:44:29 +01:00
9fa49b8584
vtk files, mainly removed from vtk import *
2016-03-02 13:52:33 +01:00
e89923d6d3
next round
2016-03-02 11:11:20 +01:00
5d7e138a9b
long line
2016-03-02 10:55:21 +01:00
f77de7ac6e
adjusting style (mainly long lines an "== None")
2016-03-02 10:52:24 +01:00
043f2faeb3
line too long
2016-03-01 21:59:59 +01:00
98476ea29c
more improved scripts
2016-03-01 21:35:59 +01:00
9cfc27d295
line too long (132 lines max code, like Fortran, 159 including comments, Python standard)
2016-03-01 21:18:32 +01:00
80dc23d93d
following "prospector -t pep8 -t pyflakes -t dodgy -t profile-validator -t pep257"
2016-03-01 21:11:43 +01:00
e55d0ae3ca
further attemps to make it conform with best python practice
2016-03-01 20:44:43 +01:00
6eb170bc07
still struggling with prospector
2016-03-01 19:37:31 +01:00
3b33d320b1
getting pyflakes to ignore
2016-03-01 19:06:00 +01:00
2a50c6bf86
using prospector --tool=dodgy --tool=pyflakes -M to find python flaws
2016-03-01 18:25:14 +01:00
7c9d344601
python files now report their version depending on VERSION file in $DAMASK_ROOT
2016-01-27 17:06:00 +00:00
c710709b1a
example Makefile typically does not work, deleted
2015-12-15 14:34:03 +00:00
19ddbc9b21
fixed typo and simplified
2015-12-15 06:16:47 +00:00
d76fcb4be8
was giving wrong results
2015-12-05 21:34:39 +00:00
7eb7a4e8cd
changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered
2015-12-04 22:34:19 +00:00
35202494c2
fixed issue caused by using -r twice as option label.
2015-12-04 04:33:23 +00:00
784c78a3b0
removed defunct option to output labels as column vector.
2015-12-04 04:31:53 +00:00
937634d703
added group shuffling (i.e. exchanging unique values)
2015-12-04 01:17:45 +00:00
55b33e5597
added option “inplace” to directly modify VTK file instead of creating copy_added.
2015-12-02 23:10:14 +00:00
f49091c952
addDeformedConfiguration without core module
2015-12-02 20:53:02 +00:00
0ffcb7fdaf
cleaning
2015-12-01 16:37:20 +00:00
40c2a5dd6d
differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though
2015-11-20 15:58:32 +00:00
4c51c15795
changed option to —coordinates.
...
gracefully extend points to be 3D.
2015-11-14 01:52:31 +00:00
2c9f9981e2
polishing of addRectiliearGridData.
...
subsumed functionality of addVoxelgridData into it.
2015-11-10 01:49:32 +00:00
ccf7530121
added output selection “rodrigues”
2015-11-10 01:34:10 +00:00
fe1dbf2ea0
output file name now contains both position and mode.
...
e.g. ${prefix}_ipinitialcoord(point).vtr
2015-11-03 21:44:36 +00:00
ad06fc1a77
fixed buggy mapIncremental behavior for anything else than averaging (the standard case luckily…)
2015-10-27 20:16:24 +00:00
ebf20f2ebc
unified style and other minor improvements
2015-10-15 19:51:27 +00:00
723f135177
can now handle tiling of values (scalar [string,number] spread out to vector and such)
2015-10-09 14:22:41 +00:00
196afb9b31
adopted change in named argument (strict -> SST) for disorientation
2015-10-09 13:06:51 +00:00
fc9d290339
unified structure and names, added test for vtk{point/voxel}cloud
2015-10-09 11:24:26 +00:00
1bd8167445
requires core module and is most likely not used.
...
When needed, a Complete, lean redesign is simpler than updating to current coding style
2015-10-06 18:11:58 +00:00
22048cb546
fixed a bug
2015-10-02 01:59:59 +00:00
863fe5ddf0
needs modules “math” and “random” for user-supplied conditions…
...
(do not remove through pyflakes—shall we introduce dummy code to keep the modules “active”?)
2015-09-29 22:27:07 +00:00
202ee00049
Eliminated redundant searches for similar orientations in neighboring points…speeds up script by 2 orders of magnitude
2015-09-28 19:03:24 +00:00
55dc2b419a
warn if unexpected file size is encoutered
2015-09-24 17:07:27 +00:00
f4d4a8e1ec
adopted philips changes for reporting, using pyflakes to clean up
2015-09-24 09:24:42 +00:00
3c901e5549
added option for Euler angle output in degrees
2015-09-23 23:05:28 +00:00
chen