5ff8a7067e
fixed bug and re-reverted to faster version. added python multiprocessing functionality. polishing and renaming
2013-07-01 17:15:24 +00:00
89cea68bc5
now using ASCIItable object and numpy array.repeat --> about 50x faster for large geoms (i.e. several mio voxels).
2013-06-30 19:11:16 +00:00
39758f5c53
removed twoD option remnants
2013-06-30 19:09:01 +00:00
1f891c544d
now using ASCIItable object (much faster file writing).
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(temporarily) switched back to rev2496 logic...
changed to diffusion distance as command line argument (instead of taking sqrt(time))
2013-06-30 13:51:21 +00:00
dd3d53e238
simplified grid/size synonyms treatment
2013-06-30 13:47:01 +00:00
21c4447955
polishing and code unifications
2013-06-30 12:35:04 +00:00
24fc14c2f3
fixed small syntax error introduced in last commit...
2013-06-30 00:46:52 +00:00
77aa1c27b0
now based on damask.ASCIItable object
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continue with next if one file is broken (used to stop!)
packing of already packed works now
overall speed improvement
standard unpacked output is 2D: use -1/--onedimensional for linear list
2013-06-30 00:39:48 +00:00
fcc2736431
now based on damask.ASCIItable object
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continue with next if one file is broken (used to stop!)
improved index substitution and adopted more numpy functions --> notably faster
2013-06-30 00:37:03 +00:00
f204c38d4d
now based on damask.ASCIItable object
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continue with next if one file is broken (used to stop!)
switched to numpy functions for geom reshaping and writing --> 10x faster
2013-06-30 00:34:16 +00:00
7d6035dcfa
now based on damask.ASCIItable object
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continue with next if one file is broken (used to stop!)
2013-06-30 00:31:44 +00:00
da1b4ff05b
now based on damask.ASCIItable object
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switched to numpy functions for grid generation --> about 20x faster.
2013-06-30 00:30:06 +00:00
4537720895
faster version for large number of grains. now performing diffusion on a small window around each grain where window around each grain is obtained cheaply
2013-06-27 16:57:14 +00:00
034a6bc926
grid dimension can be changed by factor ("2x"), or left alone with number <= 0.
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now understands packed geom structure.
2013-06-27 15:35:49 +00:00
5f347648e1
now understands packed geom structure
2013-06-27 15:34:37 +00:00
76171eec15
added possibility for factors---indicated by "x" at the end---and left-alone condition now comprises "0" as well as "negative numbers. understands packed structures, too.
2013-06-27 12:58:12 +00:00
8b5ba9f8f0
now understands packed geom-files (much faster processing...)
2013-06-21 21:19:14 +00:00
4cf2e75dc1
justification of numbers done with space instead of "0"s
2013-06-21 21:18:10 +00:00
e53c67f0e0
added black list for immutable microstructures.
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now able to parse packed geom-files.
2013-06-21 21:17:03 +00:00
3b4573301c
removed now obsolete Moore neighborhood array
2013-06-21 19:10:10 +00:00
5d15f68914
added help description.
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fixed bug for grain index (+1).
renamed some variables and added a few comments.
2013-06-21 19:08:20 +00:00
2e8756b724
faster version of smoother using the scipy gaussian filter to get the diffused microstructure and vectorized sharpening of the diffused microstructure
2013-06-21 16:59:49 +00:00
45951e27c5
script to smooth out interface roughness in a (polycrystal) geom
2013-06-20 19:45:25 +00:00
920195809c
fixed bug in auto determination of size and grid
2013-06-11 10:11:14 +00:00
e635b06270
last polishing on preprocessing scripts, documentation and scripts are all up to date.
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added addSchmidfactors to post processing scripts
2013-06-04 12:56:57 +00:00
a21dd816c7
init reporting of constitutive_*.f90 had less/to much spaces, renamed label to LABEL because it is a parameter.
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removed debug output of geom_fromEuclideanDistance.py
2013-05-28 17:31:55 +00:00
b3a90a8a3b
last changes on preprocessing tools, only documentation needs to be done
2013-05-17 16:44:03 +00:00
17b81fda7c
still improving preprocessing scripts
2013-05-15 17:23:21 +00:00
53348db000
tested the modified scripts, all scripts generating geometry now named geom_from...
2013-05-15 16:02:38 +00:00
0b4a5cfa9b
geom_check is now using vtk class, other scripts stop execution in case of invalid grid or size
2013-05-14 21:09:37 +00:00
9093cf2072
polishing, unifying,simplifying
2013-05-14 17:51:53 +00:00
2acd737859
polishing, unifying,simplifying
2013-05-14 17:19:36 +00:00
563e74c832
now also using numpy
2013-05-14 17:00:41 +00:00
b2c50124b5
more improvements on structure, comments and header generation of pre processing tools
2013-05-13 13:10:31 +00:00
52af9aaabf
made spectral preprocessing more verbose (now reporting changes on header) and aware of new keywords, added coding information below shebang
2013-05-13 11:27:59 +00:00
a003d14824
grid and size for vicinityOffset, small changes for other scripts
2013-04-25 16:51:32 +00:00
5d8664e230
updated to new keywords + more verbosity
2013-04-25 15:53:41 +00:00
7cbf107751
removed misplaced new line statement
2013-04-24 11:07:05 +00:00
aa07656a90
exchanged final two occurrences of "grains" to "microstructures"
2013-04-18 13:53:13 +00:00
d971a32516
changed keywords, now also printing out altered size/grid/microstructures information
2013-04-16 18:00:14 +00:00
2ff0f1b93e
keywords update from resolution/dimension to grid/size
2013-04-12 14:13:32 +00:00
b4f67248a5
deleted two simple scripts used for debugging but with almost no use any more
2013-04-12 13:22:15 +00:00
7bcf1d6072
added ID information of creator script to header, changed keywords (resolution->grid, dimension->size)
2013-04-12 12:48:39 +00:00
4314ab236e
added ID information of creator script to header
2013-04-12 11:15:17 +00:00
6f0308844f
geom packing/unpacking won't throw away unknown header information any more (might contain comments)
2013-04-12 10:47:44 +00:00
0b1033d63a
switched to new keywords "grid" and "size", still reads the old "resolution" and "dimension" but writes the new ones
2013-04-12 10:27:05 +00:00
010d4c6e26
added script to make 27 periodic copies (3 in each dimension)
2013-03-11 13:40:30 +00:00
8a66693001
added script to convert data used by R.A. Lebensohn to spectral solver (geom, material.config) format
2013-03-05 16:31:17 +00:00
0d7f1e8623
killed "margin" option, now same as all others: resolution and dimension in x and y.
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can be non-square grid.
2013-02-27 18:43:53 +00:00
565c532546
fixed bugs (grain index start, alpha orientation for elliptic osteons).
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added option to rotate osteon relative to periodic box.
2013-02-27 10:56:30 +00:00
1cc990c7ac
osteon geom and config generator
2013-02-25 17:12:13 +00:00
831ad6d9c8
added leading zeros to names of microstructures and phases, spaces caused problems during initialization
2013-02-20 14:50:01 +00:00
a90f15a3d3
corrected usage of "append" (which does not copy list items but only creates references)
2013-02-13 16:00:02 +00:00
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
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changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
c8aaf8f6d4
added $id flags and specified line ending types when missing.
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setup script missed ".py" extension for geom_euclideanDistance.
2013-01-18 12:59:26 +00:00
0e93d51fed
adopted same algorithm as in addEuclideanDistance
2013-01-18 11:42:27 +00:00
096204cd79
corrected missing file renaming of output
2013-01-18 11:39:53 +00:00
f63bb747c1
script to calculate the euclidean distance map (shortest distance to a grain boundary) of a given geom description using fast marching method (O(N logN) ops). grain boundary extracted using FD stencil.
2012-11-29 21:53:57 +00:00
05507a6240
removed opening of unused _tmp file
2012-11-27 17:59:56 +00:00
b5945ced5e
changed counting of rows from pythonic (starting at 0) to human way (starting at 1)
2012-11-20 10:27:09 +00:00
1df9be233d
changed default threshold to 0.0
2012-11-08 17:08:41 +00:00
025d6c9048
renamed script to new convention
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aligned output behavior to that of fromVoronoiTessellation, i.e., standard output is geom, --config gives associated material.config stud
2012-11-08 15:44:51 +00:00
af2aa8500d
added option to specify crystallite index
2012-11-08 15:43:38 +00:00
c4c27860b2
renamed script
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updated to recent standard in io processing
introduced "primitive" bicontinuous structure in addition to "diamond" and "gyroid"
2012-11-07 16:52:10 +00:00
7cf2024be3
fixed buggy parameter checking
2012-11-07 16:51:17 +00:00
e11d107956
fixed reporting to STDOUT/STDERR
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fixed buggy parameter checking
2012-11-07 16:49:47 +00:00
cfc8823328
missed those three in former commit...
2012-11-05 21:28:01 +00:00
1bd4262cfb
renaming of (loosely related) "spectral" scripts to (more tightly related) "geom" versions.
2012-11-05 21:19:12 +00:00
afaf1f4e8c
made errors report to STDERR.
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maxMicrostructure remains silent if not present.
2012-10-30 16:32:00 +00:00
f2229883b5
exchanged "maxGrainCount" for "maxMicrostructure", since this is what it really means...
2012-10-30 16:15:10 +00:00
ff164c9209
changed packing syntax from "N copies of x" to "N of x" (now consistent with IO.f90)
2012-10-30 15:53:46 +00:00
2d36d52cf7
changed packing syntax from "N copies of x" to "N of x" (now consistent with geomPack and IO.f90)
2012-10-30 15:47:11 +00:00
17bfc3b284
added explanation of script purpose to its usage output (-h)
2012-10-18 07:24:44 +00:00
124451ac1a
added missing comment sign #
2012-10-04 08:42:13 +00:00
0a961bef55
made test for spectral packing/unpacking working again, small fixes in the 2 scripts
2012-09-28 14:49:07 +00:00
5dbbb56460
fixed bug in 2D output format alignment.
2012-09-13 12:28:21 +00:00
77b2eef269
corrected wrong compiler option for gfortran in setup and updated naming scheme
2012-09-13 12:20:00 +00:00
b76fee325b
script to shift (physical) origin of geometry file and/or shift microstructure indices by fixed amount and substitute individual indices by other ones.
2012-09-13 10:12:00 +00:00
66e38606f0
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:09:54 +00:00
1c0649e17a
syntax errors in one file terminated the script. now continues with next input...
2012-09-13 10:08:57 +00:00
8078585ce8
removed two left-over debug statements
2012-09-13 08:46:18 +00:00
3d14c5b234
functionality now subsumed into geomCanvas
2012-09-13 07:58:29 +00:00
4263191423
functionality now subsumed into geomCanvas
2012-09-13 07:57:57 +00:00
1fe202fd90
added $ID and line endings.
2012-09-13 07:56:45 +00:00
4f6e0eda32
splitter geom-file un/packing into two separate scripts.
2012-09-05 15:15:11 +00:00
a94b089aaa
removed old fortran brute force based tessellation
2012-07-26 09:07:24 +00:00
783e1b50e2
condensed info parsing.
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added info to report new origin of grid (based on --offset).
2012-06-26 18:08:50 +00:00
fd3d592333
added capability to respect "origin" information in header
2012-06-26 18:07:38 +00:00
cd04f990c5
added $id$ property and LF ending
2012-06-26 17:20:16 +00:00
9041c5de39
fixed help texts
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killed full number range output option (use spectral_geomPack if needed)
2012-06-26 14:41:25 +00:00
2b5ff6a456
2 small corrections for header of geom file
2012-06-26 10:41:22 +00:00
77ee33ec1f
script to changes the (three-dimensional) canvas of a spectral geometry description
2012-06-21 12:57:14 +00:00
01a9290567
deleted old incarnation...
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new script follows established option parsing.
can rescale (increase only) the number of grid points in any dimension (with or without concurrent dimension scaling).
2012-06-20 16:00:48 +00:00
1105824562
new option to not rescale patch (set size = 0)
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added "3 header" to file output
will now extrude for spectral grids
2012-06-20 15:58:43 +00:00
dfc8606207
boundary conditions now consider patch dimension along pulling direction (used to be orthogonal to that..!)
2012-06-13 09:28:59 +00:00
1c427e8642
loop corrected
2012-05-14 07:58:21 +00:00
542768d712
bug fixed
2012-05-11 08:36:42 +00:00
c962452cda
python version of voronoi_tessellation.f90 generating geom file and material_config file (using kd_tree nearest neighbor search)
2012-05-10 16:42:07 +00:00
0cb983606f
spectral_geomPack is now formatting depending on necessary digits (via additional header information)
2012-05-02 13:44:12 +00:00
b87b2160e7
fixed bug occurring for one item lines.
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shortened logic here and there.
2012-04-25 13:53:56 +00:00
Pratheek Shanthraj