Commit Graph

1072 Commits

Author SHA1 Message Date
Philip Eisenlohr 499ce01748 added Geom.copy() method 2020-08-22 13:57:31 -04:00
Martin Diehl 34a08bd8b8 pip package is pillow, not PIL 2020-08-22 17:04:21 +02:00
Philip Eisenlohr 752d6f773b corrected add_primitive test 2020-08-09 23:14:32 +02:00
Martin Diehl ff7eed4477 (unified) type hints 2020-08-08 20:56:17 +02:00
Martin Diehl 0c6ce390b5 simple IO tests
can be improved ...
2020-08-08 20:35:50 +02:00
Martin Diehl 6a5471d243 have microstructure with 'to' and 'of' 2020-08-08 20:24:36 +02:00
Martin Diehl 55a620b378 migrating to library 2020-08-08 20:14:30 +02:00
Martin Diehl a0e0f28e51 migrating shell scripts to library 2020-08-08 19:42:34 +02:00
Martin Diehl 5fcff876f9 replace selectively
useful for vicinity_offset and add_primitive
2020-08-08 18:41:47 +02:00
Martin Diehl 56eb57d253 homogenization will be removed soon, stop reporting it 2020-08-08 18:24:17 +02:00
Karo 7824a61f2e Merge branch 'user_defined_add_calculation' into 'development'
User defined add calculation

See merge request damask/DAMASK!195
2020-08-06 00:53:16 +02:00
Philip Eisenlohr ce00371f52 fixed rounding bug and updated reference images 2020-08-05 10:44:10 -04:00
Philip Eisenlohr e4103564a9 16bit color index; proper rounding of index values 2020-08-05 10:08:48 -04:00
Martin Diehl 0aaba487d7 required packages 2020-08-05 06:20:05 +02:00
Martin Diehl 856dc22eab Merge branch 'imageData-as-colormap.apply' of magit1.mpie.de:/damask/DAMASK into imageData-as-colormap.apply 2020-08-04 20:38:02 +02:00
Martin Diehl 7d49606597 restored correct bound calculation
test different bounds options
2020-08-04 20:34:40 +02:00
Philip Eisenlohr e73ffd6da9 fixed and condensed lo,hi range assignment 2020-08-04 20:29:27 +02:00
Martin Diehl e07c00a592 polishing + simple test
autoscaling seems to be broken
2020-08-04 20:14:04 +02:00
Philip Eisenlohr 84551c9d1e integrated former imageData functionality as "shade" method 2020-08-04 13:05:30 -04:00
Martin Diehl ae20f5ffe6 attempt to fix parallel writing on MacOS
should resolve TypeError: cannot pickle
'vtkmodules.vtkIOXML.vtkXMLRectilinearGridWriter' object error
2020-08-03 18:19:38 +02:00
Martin Diehl 3f2e63977d not needed anymore 2020-07-31 19:46:44 +02:00
Martin Diehl 72ea9a5cec non-vectorized formulas can be implemented in a user function 2020-07-31 19:42:44 +02:00
Martin Diehl a9f53f4822 non-vectorized formulas can be implemented in a user functionc 2020-07-31 17:04:14 +02:00
Martin Diehl 50d7842dbe more tests 2020-07-31 16:50:01 +02:00
Martin Diehl aadce1e554 Merge branch 'development' into user_defined_add_calculation 2020-07-31 16:15:31 +02:00
Martin Diehl daab5a8952 polishing 2020-07-24 22:42:16 +02:00
Martin Diehl 326b82b3aa symmetric scatter around nominal value 2020-07-24 22:41:41 +02:00
Martin Diehl 4860f9c9ce drop support for parallel marc versions
can still be handled by the user, but is a niche use case
2020-07-18 09:51:53 +02:00
Martin Diehl 2bbd68d964 with_suffix strips .1 from 2019.1 2020-07-16 09:33:17 +02:00
Martin Diehl 199ec51bf8 typo 2020-07-15 21:59:43 +02:00
Martin Diehl 9225d439ab object oriented path handling 2020-07-15 21:58:24 +02:00
Martin Diehl fa7f7e6fa4 don't complain if ssh without -X/-Y 2020-07-15 21:19:09 +02:00
Martin Diehl 333e840b09 standard behavior
most modules have an __version__ attribute
2020-07-15 20:57:56 +02:00
Martin Diehl 6259984e93 simplified
complicated, but allows to use functions as properties
2020-07-15 20:54:37 +02:00
Martin Diehl b0e06f180a reading numpy manual ...
https://numpy.org/doc/stable/reference/generated/numpy.isclose.html
rtol=1.e-8, b=1 gives atol+btol=1.e-8+1e-9, simplified to 1e-8
2020-07-13 22:48:29 +02:00
Francisco Jose Gallardo Basile e1bbaac0d7 Merge branch 'Vectorize-Orientation' into 'development'
Vectorize orientation

See merge request damask/DAMASK!186
2020-07-03 12:22:04 +02:00
Martin Diehl 7b3d1204fa easier to use 2020-07-03 07:29:31 +02:00
Philip Eisenlohr d4f97f8346 Merge branch 'misc-improvements' into 'development'
Misc improvements

See merge request damask/DAMASK!184
2020-07-02 21:52:47 +02:00
Philip Eisenlohr 7b899f1ff1 fixed output number format width for single increment0 2020-07-02 11:33:09 -04:00
Philip Eisenlohr 81b3c10305 removed ambiguous variable "l" 2020-07-02 10:37:57 -04:00
Philip Eisenlohr 368a241931 added testing of __iadd__ and __invert__ 2020-07-02 10:27:52 -04:00
Philip Eisenlohr 5a96708f41 added __iadd__ method 2020-07-02 10:26:04 -04:00
Philip Eisenlohr f3ff2e7412 added __iadd__ method 2020-07-02 10:25:04 -04:00
Philip Eisenlohr 3b72d0ec72 added __invert__ method to reverse colormap 2020-07-02 10:13:47 -04:00
Martin Diehl b88becb9d0 don't go out of focus during initialization 2020-07-02 08:25:35 +02:00
Martin Diehl 208d5109d4 still needed ... 2020-07-02 08:14:13 +02:00
Martin Diehl 86dc7054a4 still needed 2020-07-01 22:11:16 +02:00
Martin Diehl 4abd77fccf more test coverage 2020-07-01 17:31:16 +02:00
Martin Diehl be1eb996e0 more tests and cleaning 2020-07-01 15:12:34 +02:00
Martin Diehl a7e3dd5a56 Merge branch 'development' into Vectorize-Orientation 2020-07-01 13:30:39 +02:00
Martin Diehl e18a5b8a1b simplifications + more tests 2020-07-01 08:57:28 +02:00
Martin Diehl de8e9b5fc1 fast reduced operation 2020-07-01 00:37:02 +02:00
Martin Diehl 23365660d8 polishing 2020-06-30 23:18:32 +02:00
Martin Diehl ef0c78745a fix for vectorized in_SST + test 2020-06-30 23:05:41 +02:00
Martin Diehl 49d448dced vectorized and cleaned 2020-06-30 21:43:57 +02:00
Martin Diehl 9a83b11a99 testing IPF color (vectorization) 2020-06-30 18:41:59 +02:00
Martin Diehl bdb461a553 more flexible and independent 2020-06-30 18:12:39 +02:00
Martin Diehl 6e27a140f6 better split 2020-06-30 17:35:52 +02:00
Martin Diehl 3d6afff27a clearer name 2020-06-30 17:30:29 +02:00
Martin Diehl be21d1289d using slicing method 2020-06-30 16:33:04 +02:00
Martin Diehl c86e3e292c WIP: cleaning namespace 2020-06-30 14:07:10 +02:00
Martin Diehl 9d94b521ad polishing 2020-06-30 13:31:58 +02:00
Martin Diehl ce7018164f WIP: more reasonable naming 2020-06-30 13:05:06 +02:00
Martin Diehl b8b34080fe enable array like slicing/iteration 2020-06-30 12:16:47 +02:00
Martin Diehl c8adfae0fa bugfix: wrong variables used 2020-06-30 07:16:49 +02:00
Philip Eisenlohr 8dc87023d1 test from_range; update ASCII colormap labels (i_RGBA) 2020-06-29 22:23:24 -04:00
Philip Eisenlohr decbe8074a not using unassigned variable 2020-06-29 22:22:21 -04:00
Philip Eisenlohr d3b3d628b2 PEP conformity... 2020-06-29 22:07:14 -04:00
Philip Eisenlohr 39aac76859 __add__, from_range, fixed missing np.array(colors), show peppered... 2020-06-29 22:04:03 -04:00
Philip Eisenlohr 97ca1b1a9b try wxPython before tkinter, recent macOS otherwise fails 2020-06-29 22:02:12 -04:00
f.basile d06daec4cb reducec vectorized is improved 2020-06-29 18:25:45 +02:00
Martin Diehl 2d0c680daf useful information 2020-06-29 07:30:42 +02:00
f.basile 4875191ffd change if statement so github doesnt complain 2020-06-28 19:32:22 +02:00
Martin Diehl a657125840 standard version string 2020-06-28 19:30:23 +02:00
f.basile a99f016438 problem with if value is true / if value == True 2020-06-28 19:29:52 +02:00
Martin Diehl c7eb56a63d single precision reference files 2020-06-28 19:25:58 +02:00
Martin Diehl 37f7362cbe Merge branch 'development' into misc-improvements 2020-06-28 19:23:17 +02:00
Martin Diehl 323f828606 Merge branch 'development' into modernize_colormap 2020-06-28 19:09:52 +02:00
f.basile 8484d2e6cc fix github stuff 2020-06-28 19:05:10 +02:00
f.basile 352c4e95f1 more vectorized 2020-06-28 19:03:06 +02:00
Martin Diehl 1cfa6d44d9 dummy version could be useful for other tests
note that monkey patching requires direct access to damask.version in
the respective modules.
'from xx import yy' creates a copy (at least for the version string).
2020-06-28 11:51:30 +02:00
Martin Diehl b3f5ee022a unified style 2020-06-28 11:40:19 +02:00
Martin Diehl e6a87da37c compare to reference results
need to patch damask.version to be independent of version strings (in
json and ASCII table)
2020-06-28 11:20:09 +02:00
Martin Diehl 6a748d2edf do not expand single strings into characters 2020-06-28 11:19:18 +02:00
Martin Diehl ae4146f1c6 report version, write out 'modern' ASCII table style 2020-06-28 11:18:22 +02:00
Martin Diehl e81b67e964 polishing 2020-06-28 10:32:59 +02:00
Martin Diehl 1c03bd157f more testing 2020-06-28 10:25:28 +02:00
Martin Diehl b78c809375 real output 2020-06-28 10:25:28 +02:00
Martin Diehl 3513754647 low/high instead of left/right 2020-06-28 10:25:28 +02:00
Martin Diehl f4d13bc810 binary representation depends on vtk lib version 2020-06-28 10:07:31 +02:00
Martin Diehl d965d66319 [skip ci] documenting 2020-06-28 09:34:10 +02:00
Martin Diehl 8a9a768a77 support pathlib.Path 2020-06-28 07:17:51 +02:00
Martin Diehl 8d5a72e936 more test, swich to pathlib 2020-06-27 23:38:58 +02:00
Martin Diehl 8c8132bcd7 coordinates should not have random names 2020-06-27 23:37:09 +02:00
Martin Diehl c929af12c0 testing/polishing 2020-06-27 19:44:12 +02:00
Martin Diehl cf63226721 testing all conversions 2020-06-27 18:55:27 +02:00
Martin Diehl 234699bd18 reverse should return DAMASK colormap 2020-06-27 16:25:10 +02:00
Martin Diehl e779e190ea new colormap class for use in python
- based on matplotlib "ListedColormap"
- constructors
  - Array of RGB values (inherited),
  - 'from_bounds': perceptual uniform colormap within given bounds
  - 'from_predefined': from matplotlib or DAMASK templates
- export to files (WIP)
- preview on screen
2020-06-27 16:12:40 +02:00
Martin Diehl 1f9b5280cb forgotten debug statement 2020-06-26 11:47:04 +02:00
Martin Diehl a69f82e7c3 speed up vtk out
- limit to single precision
- write in background
2020-06-26 11:45:54 +02:00
Martin Diehl bfae88a364 numpy compatible 2020-06-26 11:45:30 +02:00
Martin Diehl bddb514072 more systematic reporting 2020-06-26 11:45:06 +02:00
Martin Diehl 27220a03bc not invalid anymore 2020-06-25 09:23:43 +02:00
Martin Diehl 3290e2c585 handle even obscure directions 2020-06-25 08:29:36 +02:00
Martin Diehl 5d7213b062 restore reminder to document changes
causes conflicts with outdated tests and is not urgent: postpone until
release.
2020-06-25 08:19:07 +02:00
Martin Diehl c9829f0f1f only Chuck Norris can divide by zero 2020-06-25 08:18:39 +02:00
Martin Diehl cd23937af5 Merge branch 'development' into f-strings 2020-06-25 07:46:24 +02:00
Philip Eisenlohr e64d353865 condensed scale_to_coprime; added test of scale_to_coprime 2020-06-24 18:37:33 -04:00
Philip Eisenlohr 9999560247 easier understanding of from_ang data layout interpretation 2020-06-24 18:36:43 -04:00
Philip Eisenlohr 14d3b7e66d more f-stringing 2020-06-24 16:59:55 -04:00
Philip Eisenlohr 966b6f8007 shapes init copes with integers instead of strict tuples; introduced f-strings 2020-06-24 14:18:06 -04:00
Philip Eisenlohr f8f433e826 introduced f-strings 2020-06-24 14:13:56 -04:00
Philip Eisenlohr ff858fd4c8 [skip ci] corrected help string for "srepr" 2020-06-24 20:13:09 +02:00
Philip Eisenlohr 4314ec1f37 [skip ci] started to replace .format() with f-strings 2020-06-24 11:02:37 -04:00
Anderson Wallace Paiva do Nascimento 3d93a5ff00 Merge branch 'migrate-to-pathlib' into 'development'
Migrate to pathlib

See merge request damask/DAMASK!177
2020-06-24 14:54:36 +02:00
Martin Diehl 6fa5ae6ebf literature from Karo 2020-06-22 23:14:58 +02:00
Martin Diehl e33895dd35 [skip ci] better logic 2020-06-21 10:37:09 +02:00
Martin Diehl c6a5bb8a3b is 2020 2020-06-21 10:04:45 +02:00
Martin Diehl 4c5939ef23 small polishing 2020-06-20 22:51:00 +02:00
Martin Diehl 15b43bcebf from_directions is not general, removed
polishing
2020-06-20 19:57:49 +02:00
Martin Diehl 3f63a4fdbc [skip ci] typo 2020-06-20 18:13:34 +02:00
Martin Diehl 4dae3643c9 vectorized IPF color working
results also uses the vectorized form.
Still needs careful checking
2020-06-20 17:15:13 +02:00
Martin Diehl ebdb65d31f standard broadcast_to behavior 2020-06-20 16:35:22 +02:00
Martin Diehl 262346ff5a polishing 2020-06-20 16:34:19 +02:00
Martin Diehl d93ed2bc5c several improvements:
- vectorized from_directions
- more tests (96% coverage, only random functionality is untested)
- updated documentation, folloing numpy standard
- inverse operator '~' introduced
2020-06-20 12:20:43 +02:00
Martin Diehl 055fa64f5f better readable 2020-06-19 12:25:46 +02:00
Martin Diehl 13bf7515ce WIP (broken?): vectorized calculation of IPF color 2020-06-19 10:54:13 +02:00
Martin Diehl 1648963b57 vectorized equivalent orientation calculation 2020-06-18 22:53:04 +02:00
Martin Diehl cdda556e18 small improvements
- hack for reporting multiple rotation
- bugfix for vectorized Rodrigues vector
- more general broadcasting (even more powerfull then np.broadcast_to)
2020-06-18 22:30:22 +02:00
Martin Diehl fe5e5babfe more useful for vectorized calculations 2020-06-18 22:29:28 +02:00
Martin Diehl d0d9245707 clearer intention 2020-06-16 23:35:50 +02:00
f.basile a76b5233be fix pyflakes imported but unused in pytest 2 2020-06-05 13:54:38 +02:00
f.basile 54c20cdd3c fix pyflakes imported but unused in pytest 2020-06-05 13:53:47 +02:00
f.basile cb1779ef9a fix pep257: D415 / First line should end with a period, question mark, or exclamation point (not e) 2020-06-05 13:49:30 +02:00
f.basile eae9698d22 equivalent,related and inFZ vectorized + pytest 2020-06-05 13:48:12 +02:00
f.basile ac09a2912a fix python/damask/_orientation.py contains invalid python3 code 2 2020-06-04 16:45:44 +02:00
f.basile 6a24aee171 fix python/damask/_orientation.py contains invalid python3 code 2020-06-04 16:44:57 +02:00
f.basile 3897136f85 avoid python/damask/_orientation.py exceeds line length limit (maximum line length 141 > 132) 2020-06-04 16:43:28 +02:00
f.basile 0c41e33434 orientation.equivalent takes several rotations at the same time + small test"
"

""
2020-06-04 16:39:24 +02:00
Martin Diehl a9c61ede69 bugfix: should also work if DAMASK_NUM_THREADS is not set 2020-06-03 20:24:18 +02:00
Martin Diehl bda555fd1c we are looking for a path, not for a file 2020-06-03 16:47:03 +02:00
Martin Diehl bb5485927e names like 2020.2 cannot be converted to int 2020-06-03 15:18:46 +02:00
Martin Diehl 5da1aa49bc string should be a Path object 2020-06-03 15:17:00 +02:00
Martin Diehl 9b04a45bbd bugfix (wrong variable name) 2020-06-03 13:53:00 +02:00
Martin Diehl 3be1a33820 easier to read 2020-06-03 13:32:47 +02:00
Martin Diehl c67fbacfc7 higher test coverage
- invalid operations
- legacy output
2020-06-03 11:03:31 +02:00
Martin Diehl c5d0c7e52e easier to read, more flexible 2020-06-03 10:44:40 +02:00
Martin Diehl ac9fddd9e9 Merge remote-tracking branch 'origin/development' into misc-improvements 2020-06-02 00:12:50 +02:00
Martin Diehl a51cc39613 proper docstring 2020-06-01 22:13:01 +02:00
Martin Diehl 72a0b1fae5 testing and polishing 2020-06-01 11:33:22 +02:00
Martin Diehl 7a193639fb also show datasets without unit
currently, this is only the orientation dataset
Also enable renames. Since this alters the history, the user need to
enable this
2020-05-31 23:50:06 +02:00
Martin Diehl bcb0ce5e5e typo 2020-05-31 18:51:12 +02:00
Martin Diehl adb92de8cc Merge branch 'development' into less-shell-scripts 2020-05-31 18:49:51 +02:00
Martin Diehl 421b8f4268 documented function interfaces 2020-05-30 17:31:50 +02:00
Martin Diehl 1afa00a19c testing systematically all possibilities 2020-05-28 08:05:16 +02:00
Martin Diehl 0fe450a033 Merge branch 'misc-improvements' into less-shell-scripts 2020-05-27 17:40:13 +02:00
Martin Diehl 31f72aa912 handle min/mid/max eigenvalues/vectors separately
storing as matrix/vector is not favorable for paraview and in many
cases, either min or max are of interest only
2020-05-27 17:39:46 +02:00
Martin Diehl addc4c36d1 test for XDMF writer
just ensure that it does not throw an exception
2020-05-26 08:06:39 +02:00
Martin Diehl 520dfe216a cleaning 2020-05-26 07:57:32 +02:00
Martin Diehl 908788271a Merge branch 'misc-improvements' into less-shell-scripts 2020-05-26 07:24:03 +02:00
Martin Diehl 5ad7fe04d0 bugfix:
used wrong type
2020-05-26 07:15:27 +02:00
Martin Diehl 670e08468b reorder
tests depend on other functionality that should be tested first
2020-05-26 06:49:29 +02:00
Martin Diehl 88c49fc4f4 also check values 2020-05-26 06:48:52 +02:00
Martin Diehl 7f09c90c7d different h5py versions seem to throw different errors 2020-05-26 06:39:11 +02:00
Martin Diehl 6f7c7005b0 bugfix:
- proper overwrite
- no out of bounds error for empty time selection (just pick nothin)
2020-05-25 23:54:06 +02:00
Martin Diehl 9855c61747 store vtk file in tmp directory 2020-05-25 23:39:19 +02:00
Martin Diehl 9076fbe525 testing overwrite functionality 2020-05-25 23:05:31 +02:00
Martin Diehl d6877da2b6 single source of truth 2020-05-25 20:15:45 +02:00
Martin Diehl d9d089c359 avoid repetition and do correct encode/decode 2020-05-25 20:13:57 +02:00
Martin Diehl 5d0a2aac8f polishing reporting 2020-05-25 20:13:57 +02:00
Martin Diehl b9e16ea951 overwriting datasets makes sense in special cases
but prevent user from accidently doing that and store the information
2020-05-25 20:13:57 +02:00
Martin Diehl 248f199a7b track creation time 2020-05-25 18:51:10 +02:00
Martin Diehl b1b8d02320 typo 2020-05-25 16:41:23 +02:00
Martin Diehl 9d7158b51a Merge branch 'misc-improvements' of magit1.mpie.de:/damask/DAMASK into misc-improvements 2020-05-25 16:40:23 +02:00
Martin Diehl f07eaf19d0 fixed broadcasting + corresponding test 2020-05-25 16:37:08 +02:00
Martin Diehl 784d6d09d9 cleaning 2020-05-25 15:55:38 +02:00
Martin Diehl dad7c7a2a0 Merge branch 'vectorize_rotation' into misc-improvements 2020-05-25 15:50:03 +02:00
Martin Diehl 3e2cbef780 Merge remote-tracking branch 'origin/development' into vectorize_rotation 2020-05-25 15:46:27 +02:00
Martin Diehl 77b68ab86f using rotation class for rotations 2020-05-25 09:39:39 +02:00
Martin Diehl 39505507f1 not needed anymore 2020-05-25 08:07:12 +02:00
Martin Diehl 17aa3c00dc more tests 2020-05-24 22:52:00 +02:00
Martin Diehl 296308e11e fix for rotation around 90 deg
more tests
2020-05-24 20:52:19 +02:00
Martin Diehl 34adefd4ca simplified 2020-05-24 18:30:45 +02:00
Martin Diehl 594fcb2b72 seems more appropriate 2020-05-24 15:10:53 +02:00
Martin Diehl 3231a49107 centralize functionality 2020-05-24 09:39:58 +02:00
Martin Diehl a26cba1457 calling a few missing statements 2020-05-24 09:06:11 +02:00
Martin Diehl a3d9520c4b polishing 2020-05-23 15:54:28 +02:00
Martin Diehl 82419f8649 testing selection 2020-05-23 10:38:25 +02:00
Martin Diehl 8a848979aa missing test for IPF color 2020-05-23 09:13:45 +02:00
Martin Diehl 0549e33a00 vectorized/fast 2020-05-23 08:38:57 +02:00
Martin Diehl e2cf527dfb add missing test 2020-05-23 08:19:08 +02:00
Martin Diehl b8e83cd263 do not overwrite 2020-05-22 20:42:13 +02:00
Martin Diehl 7bd681a5ed very simple test 2020-05-22 19:04:02 +02:00
Martin Diehl 11eda510aa testing functionality of Lattice separately 2020-05-22 18:45:27 +02:00
Martin Diehl b33de48528 testing broadcasting 2020-05-22 15:12:37 +02:00
Martin Diehl 23b1381eaf give credit 2020-05-21 11:30:25 +02:00
Martin Diehl 16f30a10d0 polishing 2020-05-20 23:50:08 +02:00
Martin Diehl 353fd3ceb6 more tests
now 95% test coverage of Rotation class
2020-05-20 19:16:31 +02:00
Martin Diehl 128a96e7f6 vectorized formula is enough 2020-05-20 18:13:51 +02:00
Martin Diehl bb419d49df polishing 2020-05-20 16:19:12 +02:00