35f9861818
Fortran standard is 2018
...
will not work for older compilers
2020-12-18 15:19:04 +01:00
403ac693da
need to pass init argument to dict superclass
2020-12-17 18:08:55 -05:00
aad123f41b
Merge branch 'table-getitem' into development
2020-12-12 19:58:42 +01:00
36e4042f0b
removed "where" method from Table class
2020-12-11 19:31:19 -05:00
32c2de6b91
Ensuring regular spacing for grid
2020-12-10 22:47:30 +01:00
4286fc3b82
Merge branch 'development' into misc-improvements
2020-12-10 20:21:00 +01:00
78192ef3fd
clearer naming + better comments, thanks to @p.eisenlohr
2020-12-07 17:49:37 +01:00
ed286ee09f
Merge branch 'rename-grid-2' into misc-improvements
2020-12-05 09:50:46 +01:00
171d642dbd
rename: Geom -> Grid
2020-12-04 07:50:47 +01:00
0fdefa5e78
renames:
...
after the rename of "grid" to "cell", the name cell should not be used
for the coordinates of the cell centers. In agreement with the names
x_p/u_p for point positions/displacements, now the "point" is used to
refer to the materialpoints (i.e. cell centers)
Additionally, "_node"/"_point" are now suffixes to
"coordinates"/"displacements".
Finally, "coords" is renamed to "coordinates"
2020-12-03 23:59:37 +01:00
ac0a20696c
rename: grid -> cells
2020-12-03 22:16:34 +01:00
4877334986
added getitem and where functionality to Table
2020-12-02 19:25:54 -05:00
d3a5979d25
meaningful result
2020-12-02 14:45:47 +01:00
aa8f30d746
Merge branch 'development' into ShowGrainBoundaries
2020-12-02 12:50:04 +01:00
1c2cdbd5a1
support of all standard numpy types
...
+ tests
2020-11-30 12:33:21 +01:00
813ef927c4
consistent with "save_XDMF" (capitalized)
2020-11-30 09:28:46 +01:00
4d2bf37193
Merge branch 'lattice-structure-rename' into ShowGrainBoundaries
2020-11-29 20:53:58 +01:00
1d05edd7b3
fixes:
...
- need to get crystal structure as attribute in test (generic function
was removed, because the crystal structure is in general not the same
over the whole domain)
- consistent sorting of attributes
2020-11-29 09:06:47 +01:00
31df4c04c8
added test
2020-11-25 12:51:52 +01:00
5ab2847b36
polishing
2020-11-23 20:06:34 +01:00
cbe8160e13
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-23 19:55:34 +01:00
7356330cf6
Merge remote-tracking branch 'origin/new_names_result' into development
2020-11-23 11:49:15 +01:00
24fabdec22
Merge branch 'development' into vector-mechanics
2020-11-22 12:02:29 +01:00
2de3a6a205
fits better to stretch_left/right
2020-11-19 22:46:52 +01:00
a87596cefc
return rotation type (ensures proper rotation)
2020-11-19 22:36:19 +01:00
a4b5c2a537
shorter (but still self-explanatory) name
2020-11-19 15:20:44 +01:00
6e5cb60132
general tensor functionality
2020-11-19 15:16:01 +01:00
903c185ee6
distinguish 'file not found' and 'invalid file'
2020-11-19 10:39:41 +01:00
cb22c34db2
Geom.load_ASCII now auto-shifts material indices
2020-11-18 18:25:25 -05:00
843d7d8cac
Merge remote-tracking branch 'origin/development' into new_names_result
2020-11-18 21:37:52 +01:00
564ee6c96a
make uvw/hkl keyword-only arguments
...
avoid to prefer one over the other, since they are mutually exclusive
2020-11-18 16:45:53 +01:00
870c0f7aca
removed aliases
...
required bump of DADF5 version
2020-11-18 14:53:11 +01:00
89c748fdf1
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-18 13:55:05 +01:00
6bedd84759
self-explanatory names
2020-11-18 08:15:04 +01:00
fa25a13264
fixed typo
2020-11-16 10:34:49 -05:00
de20e6b35d
code shortening; list_predefined() --> property "predefined"
2020-11-16 10:23:26 -05:00
5ebde607a2
einsum simplifications
2020-11-16 07:43:20 +01:00
9b9d83d93c
adding '_tensor' not needed
2020-11-16 01:15:39 +01:00
b893967b68
more systematic names and extended docstrings
2020-11-16 01:02:36 +01:00
6f81f5278d
separating general tensor math from mechanics operations
2020-11-16 00:13:34 +01:00
fd8743af5e
clearly distinguish seeds for tessellation and seeds for RNG
2020-11-15 13:49:17 +01:00
1541ac0add
more intuitive use
2020-11-15 12:38:54 +01:00
01d84c1477
testing also functions with graphical output
2020-11-15 11:49:52 +01:00
15af12bbb4
__ne__ is automatically set to !__eq__, __neq__ has no special meaning
2020-11-15 11:38:26 +01:00
51e5dda702
documentation + consistent string formatting
2020-11-15 10:54:20 +01:00
149fce0a7e
increase test coverage
2020-11-14 19:42:52 +01:00
764aacf2a1
increasing test coverage
2020-11-14 17:54:47 +01:00
9eb4e2d0de
corrected handling of scalar/array arguments
...
+ more tests
+ corrected handling of numpy types
2020-11-14 17:26:38 +01:00
6529613726
Merge remote-tracking branch 'origin/development' into vector-mechanics
2020-11-14 15:10:52 +01:00
bacfe9f462
Merge branch 'fix-add_primitive-rotation' into 'development'
...
Avoids coordinate normalization _before_ rotation
See merge request damask/DAMASK!276
2020-11-13 14:11:54 +01:00
7b7b449877
testing fixed behavior
2020-11-13 06:50:57 +01:00
8429a9d695
Merge remote-tracking branch 'origin/development' into modularize-mech
2020-11-11 07:04:23 +01:00
5926f84851
WIP: refactoring Orientation=Symmetry+Rotation, Lattice=subclass of Sym, and Crystal=Lattice+Rotation
2020-11-09 21:20:56 +01:00
287d56fc3d
consistent with new output names
2020-11-08 16:01:11 +01:00
7d4163e8a9
new format of material.yaml
2020-11-08 15:57:06 +01:00
03a68248b5
polishing
2020-11-06 13:25:00 +01:00
bbaeeb02da
Merge remote-tracking branch 'origin/misc-improvements' into h5py3
2020-11-06 13:19:47 +01:00
58a5d2666c
ensure correct Mises mode
2020-11-06 00:10:46 +01:00
4ccd068d3b
catch error in case of exisiting dataset
2020-11-05 23:00:56 +01:00
e649fb195f
update to use variable-length strings
2020-11-05 22:34:41 +01:00
30938a8278
correct order (brackets)
2020-11-05 21:38:00 +01:00
a416f5ed5b
encode/decode for h5py3 not needed anymore
...
attribute values with variable-length strings will be interpreted as
str, not bytes
2020-11-05 16:13:29 +01:00
ae959b9cc2
allow '.' in filenames
2020-11-04 18:08:04 +01:00
2867050397
corrected shortened test logic
2020-11-02 18:31:37 -05:00
4fa44d388d
shortened test for monotonous increase of material index after sorting
2020-11-02 18:21:51 -05:00
cf958d32b4
Merge branch 'development' into vector-mechanics
2020-11-02 15:23:11 +01:00
0ebb9b611d
functionality to sort material id
...
convenient for layered materials
2020-10-31 20:46:21 +01:00
cf740a279e
combine constant with varying data
2020-10-31 09:56:43 +01:00
46e5023f8b
Merge branch 'geom-improvements' into 'development'
...
Geom improvements
See merge request damask/DAMASK!264
2020-10-29 23:53:33 +01:00
0e499eedf3
correct rounding/clearer logic
2020-10-29 18:35:22 +01:00
4b700d367e
improved test
2020-10-29 17:59:44 +01:00
999cf53c07
tests+fixes
2020-10-29 07:42:41 +01:00
855bf124d3
faster
...
https://stackoverflow.com/questions/16992713
2020-10-28 16:53:16 +01:00
21f095c9d8
Merge branch 'flexible-yaml-dump' into development
2020-10-28 16:19:17 +01:00
5f03e8cf8f
0-based material indices
2020-10-28 09:31:55 +01:00
a5a127b787
new tests+ updated results
2020-10-27 16:46:08 +01:00
0804e6ee74
pythonic names
2020-10-27 13:50:47 +01:00
201a62d7c9
easier visualization if verts have a point-cell
2020-10-27 13:19:53 +01:00
4dd387d7f5
compatibility with old pyyaml + test for numpy
2020-10-27 06:39:58 +01:00
bac7ace413
Merge remote-tracking branch 'origin/general-N_constituents' into vtr-only
2020-10-13 17:39:19 +02:00
86d91baf90
0-offset for geom
2020-10-10 10:36:15 +02:00
ffabeacbcb
removing functionality related to deprecated 'geom' format
2020-10-10 09:41:11 +02:00
00e2128e03
don't test ASCII functionality
...
vtr writing in Geom class is alwas serial, no need to wait
2020-10-10 09:02:25 +02:00
0c68d293b6
N_constituents is now a general homog property
2020-10-09 07:44:05 +02:00
1b18cae46b
adjusted to new names
2020-10-02 17:49:52 +02:00
a04966582a
Merge remote-tracking branch 'origin/development' into general-config
2020-10-02 14:54:16 +02:00
58229b8851
relaxed test conditions
...
even threshold between -.5 and +.5 can result in a single material.
2020-10-02 13:26:11 +02:00
a59e64a8e4
renamed TPMS and added more from additional references
2020-09-30 17:28:25 -04:00
33685bc493
allow user do control output style
...
(numerics.yaml looks strange otherwise)
2020-09-30 12:32:37 +02:00
5ad46ae021
completely tested
2020-09-30 09:05:23 +02:00
bbed4f9c6e
nice formatting
...
will be checked by pre-receive hook
2020-09-30 08:15:02 +02:00
b383a4530e
better name, subclassing for easy extension to load
2020-09-30 07:53:25 +02:00
54e4943353
get rid of shell scripts
2020-09-30 07:11:33 +02:00
76f07e4c1e
tmp_path is preferred over tmpdir
2020-09-29 19:25:50 +02:00
8d204ea445
[skip ci] small simplification
2020-09-28 16:17:43 +02:00
d2cfcdaca0
reference Data for ODF sampling (hybridIA) + skeleton of a test
2020-09-28 16:14:27 +02:00
95b85626d8
general hybridIA functionality
2020-09-28 07:40:43 +02:00
9e3506b8ef
thorougly testing seeding functionality
2020-09-25 07:41:58 +02:00
e8454c40c7
more tests
2020-09-24 22:59:31 +02:00
4960cf43d4
documented and tested
2020-09-24 21:43:04 +02:00
e5b414419a
Poisson disc for periodic situation
2020-09-24 21:26:16 +02:00
ec23ab8b61
basic test for seeding
2020-09-24 21:06:26 +02:00
b5ea04424b
Merge remote-tracking branch 'origin/development' into seeds-module
2020-09-24 20:58:53 +02:00
8c8db5b99f
switched "Geom.materials" to "Geom.material"
2020-09-23 17:27:15 -04:00
ae579d8baa
allow to specify seed IDs explicitly
2020-09-23 09:28:00 +02:00
683161d479
Merge branch 'development' into geom-fully-out-of-place
2020-09-22 15:22:58 -04:00
05835bacd3
removed set_X(), duplicate(), and .homogenization; renamed ".microstructure" to ".materials"
2020-09-22 14:49:28 -04:00
7801f527f2
Merge remote-tracking branch 'origin/load-save-X-no-suffix' into development
2020-09-22 14:57:39 +02:00
188905766f
removed Geom.get_X() methods in favor of direct property access
2020-09-21 11:13:53 -04:00
ca2f3f9493
set_X and add_comments methods now default to out-of-place
2020-09-21 10:29:07 -04:00
7bdd44a3d9
consistent names:
...
default file operations: save/load, non-default save_xx/load_xx
2020-09-20 22:04:28 +02:00
d33507866d
statistically more valid test
2020-09-20 21:50:52 +02:00
6ab88aad2b
default format for Table is ASCII
...
hence, renamed load_ASCII/save_ASCII to load/save
2020-09-20 20:45:06 +02:00
5895e74029
p is never above 1
...
1e-4 is quite low, usually we are far above. 1e-3 from https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.normaltest.html
is not too far away.
2020-09-20 19:13:54 +02:00
5b0b0de6b4
assertion reports offense; fixed seeds for spherical and fiber
2020-09-20 12:22:41 -04:00
3cc319ef08
removed debug print statement in test_util
2020-09-19 14:30:58 -04:00
7cbd422ae3
fixed coprime error when encountering NaN
2020-09-19 13:38:32 -04:00
6f45203c98
first version of a pyaml based class for material configuration
...
pyaml is (again) actively maintained and the ruamel.pyaml API is
instable
2020-09-19 13:01:19 +02:00
c42511f101
small polishing
2020-09-18 16:32:59 +02:00
1849ff0330
polishing
2020-09-18 15:03:51 +02:00
e2cd3da295
remaning to_xx
2020-09-18 14:29:27 +02:00
cdf3323774
Merge remote-tracking branch 'origin/development' into load-save-X
2020-09-18 14:21:43 +02:00
ec7dbb4c9a
do not store temp files
2020-09-18 14:21:30 +02:00
70911b64ea
Merge branch 'development' into texture-components-in-rotation-class2
2020-09-16 09:57:50 +02:00
c6be6fe87f
fixed spherical component sampling and testing
2020-09-15 18:40:05 -04:00
0a34e342e4
fixed fiber component sampling and testing
2020-09-15 18:14:15 -04:00
9e93e8b710
test for last commit
2020-09-15 19:59:03 +02:00
3f823ca717
testing general case
2020-09-15 14:39:05 +02:00
18c38f1284
polishing
2020-09-15 13:49:44 +02:00
2a082b7983
methods for texture component calculations
2020-09-15 12:11:46 +02:00
96ad358f83
modified file reading/writing methods to load_X, save_X formalism
2020-09-15 01:14:05 -04:00
f6758ecc28
table class operates out of place
2020-09-14 07:04:01 +02:00
9fb3fef4b0
changed British "normalise" to US "normalize" as we (should) follow US English everywhere else.
2020-09-08 10:39:31 -04:00
a4785ba562
modified file writing of geom and table to a general to_file() that takes a "format=" argument
2020-09-03 10:53:16 -04:00
d645849baf
fixed remnant occurrences of .write() --> .to_file()
2020-09-02 11:32:40 -04:00
6785062a10
Merge branch 'development' into 'vtk-to-file-method'
...
# Conflicts:
# python/tests/test_VTK.py
2020-08-31 21:10:29 +02:00
03b02ad641
typos/sentence
2020-08-29 16:06:10 +02:00
0d5279863d
avoid rounding errors related to rotation
2020-08-27 09:33:09 +02:00
248ef8ef97
more tests
...
- invalid files
- scalar/array size,center,exponent for add_primitive
- rotation invariance for add primitive
2020-08-26 23:56:20 +02:00
3f24d16603
renamed VTK.write() to VTK.to_file()
2020-08-26 16:15:15 -04:00
fee21cbd9c
more sensible tests
2020-08-25 17:17:49 +02:00
96d4975fc4
using numpy functionality
2020-08-25 08:34:04 +02:00
51da632108
aiming at testing each individual statement
2020-08-25 07:49:56 +02:00
2d98325fa4
increasing test coverage
2020-08-25 01:21:17 +02:00
453f5a14c5
duplicated test (w/o wait for parallel out)
2020-08-25 00:53:05 +02:00
2560f014a3
Merge remote-tracking branch 'origin/increase-geom-test-coverage' into geom-out-of-place
2020-08-24 17:17:31 -04:00
9d505c8518
better readable
...
- more explicit reporting
- always relative import for DAMASK
2020-08-24 09:58:24 +02:00
b393da4955
relative imports
...
... it's all about damask.XXX
2020-08-24 07:28:10 +02:00
3738002e4a
forgot the new reference files...
2020-08-23 22:27:53 -04:00
446ac03b07
All geom methods are now out-of-place, i.e. return an updated duplicate (to allow for daisy chaining).
...
* Added comments when methods acted.
* Added diff method
* Added flip method
* Fixed add_primitive inversion bug (again...)
* Fixed cell centering bug in add_primitive
* Added missing tests
2020-08-23 19:43:46 -04:00
22da3af92e
cleaning (prospector complaint)
2020-08-24 00:44:18 +02:00
c7cbd961a1
more systematic monkeypatching
...
allows comparison of reference files (log/history does not contain
information about damask.version and datetime.datetime.now)
2020-08-24 00:31:38 +02:00
6f79573140
more test coverage
2020-08-23 11:05:56 +02:00
07af7b2f98
geom is written to vtr exlcusively, not to general vtk
...
base tests on vtr
2020-08-23 10:50:15 +02:00
975db01f31
microstructure -> materialpoint
...
at least for new functionality
2020-08-23 09:38:08 +02:00
b731b1e768
Geom.to_vtk improvements
...
- should be integer
- should have a test
2020-08-23 08:49:49 +02:00
499ce01748
added Geom.copy() method
2020-08-22 13:57:31 -04:00
752d6f773b
corrected add_primitive test
2020-08-09 23:14:32 +02:00
0c6ce390b5
simple IO tests
...
can be improved ...
2020-08-08 20:35:50 +02:00
6a5471d243
have microstructure with 'to' and 'of'
2020-08-08 20:24:36 +02:00
55a620b378
migrating to library
2020-08-08 20:14:30 +02:00
a0e0f28e51
migrating shell scripts to library
2020-08-08 19:42:34 +02:00
5fcff876f9
replace selectively
...
useful for vicinity_offset and add_primitive
2020-08-08 18:41:47 +02:00
7824a61f2e
Merge branch 'user_defined_add_calculation' into 'development'
...
User defined add calculation
See merge request damask/DAMASK!195
2020-08-06 00:53:16 +02:00
ce00371f52
fixed rounding bug and updated reference images
2020-08-05 10:44:10 -04:00
7d49606597
restored correct bound calculation
...
test different bounds options
2020-08-04 20:34:40 +02:00
e07c00a592
polishing + simple test
...
autoscaling seems to be broken
2020-08-04 20:14:04 +02:00
3f2e63977d
not needed anymore
2020-07-31 19:46:44 +02:00
72ea9a5cec
non-vectorized formulas can be implemented in a user function
2020-07-31 19:42:44 +02:00
50d7842dbe
more tests
2020-07-31 16:50:01 +02:00
daab5a8952
polishing
2020-07-24 22:42:16 +02:00
326b82b3aa
symmetric scatter around nominal value
2020-07-24 22:41:41 +02:00
b0e06f180a
reading numpy manual ...
...
https://numpy.org/doc/stable/reference/generated/numpy.isclose.html
rtol=1.e-8, b=1 gives atol+btol=1.e-8+1e-9, simplified to 1e-8
2020-07-13 22:48:29 +02:00
e1bbaac0d7
Merge branch 'Vectorize-Orientation' into 'development'
...
Vectorize orientation
See merge request damask/DAMASK!186
2020-07-03 12:22:04 +02:00
d4f97f8346
Merge branch 'misc-improvements' into 'development'
...
Misc improvements
See merge request damask/DAMASK!184
2020-07-02 21:52:47 +02:00
81b3c10305
removed ambiguous variable "l"
2020-07-02 10:37:57 -04:00
368a241931
added testing of __iadd__ and __invert__
2020-07-02 10:27:52 -04:00
4abd77fccf
more test coverage
2020-07-01 17:31:16 +02:00
be1eb996e0
more tests and cleaning
2020-07-01 15:12:34 +02:00
a7e3dd5a56
Merge branch 'development' into Vectorize-Orientation
2020-07-01 13:30:39 +02:00
e18a5b8a1b
simplifications + more tests
2020-07-01 08:57:28 +02:00
de8e9b5fc1
fast reduced operation
2020-07-01 00:37:02 +02:00
23365660d8
polishing
2020-06-30 23:18:32 +02:00
ef0c78745a
fix for vectorized in_SST + test
2020-06-30 23:05:41 +02:00
49d448dced
vectorized and cleaned
2020-06-30 21:43:57 +02:00
9a83b11a99
testing IPF color (vectorization)
2020-06-30 18:41:59 +02:00
bdb461a553
more flexible and independent
2020-06-30 18:12:39 +02:00
6e27a140f6
better split
2020-06-30 17:35:52 +02:00
3d6afff27a
clearer name
2020-06-30 17:30:29 +02:00
be21d1289d
using slicing method
2020-06-30 16:33:04 +02:00
c86e3e292c
WIP: cleaning namespace
2020-06-30 14:07:10 +02:00
9d94b521ad
polishing
2020-06-30 13:31:58 +02:00
ce7018164f
WIP: more reasonable naming
2020-06-30 13:05:06 +02:00
8dc87023d1
test from_range; update ASCII colormap labels (i_RGBA)
2020-06-29 22:23:24 -04:00
d06daec4cb
reducec vectorized is improved
2020-06-29 18:25:45 +02:00
a657125840
standard version string
2020-06-28 19:30:23 +02:00
c7eb56a63d
single precision reference files
2020-06-28 19:25:58 +02:00
37f7362cbe
Merge branch 'development' into misc-improvements
2020-06-28 19:23:17 +02:00
323f828606
Merge branch 'development' into modernize_colormap
2020-06-28 19:09:52 +02:00
352c4e95f1
more vectorized
2020-06-28 19:03:06 +02:00
Martin Diehl