142a72335e
small changes on the deploy me / documentation scripts
2014-05-14 10:07:10 +00:00
6df66c6349
updated Marc run_damask scripts, linking against BLAS is done by Marc anyway, removed. renamed extension of original files from org to more explicit original
2014-05-07 14:29:53 +00:00
5dedad1392
fixed typo in last commit
2014-04-30 05:05:41 +00:00
6bce04df48
changed linker command slightly to ensure dynamic linking and link now agains non-parallel (but threadsafe) versions of LAPACK
...
(compile_CoreModule.py, Makefile, abaqus_v6.env, mod_MarcMentat)
openmp is not working for Abaqus exp, probably because the ifort 14 is not supported.
Test is now using a version without openmp
2014-04-29 16:43:59 +00:00
2346a0841e
improved symbolic linking and replace deprecated print syntax
2014-04-29 14:43:04 +00:00
3f5d92b9a4
polishing and shortening
2014-04-10 19:25:23 +00:00
6550729b49
now symlinking only to know extensions (cause trouble for temp files like *.py~ and the like)
2014-04-09 10:40:10 +00:00
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
5c3e2f49d7
simplified symlinking, using python list dir method, no need to update this script anymore
2014-03-26 13:11:12 +00:00
943349fdbb
bunch of new scripts:
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gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
f146359c04
added --prefix option to configure script to specify symlink location
2014-02-28 07:47:11 +00:00
7245e38327
like for IMKL, we probably should link ACML also against the omp version
2014-02-14 20:14:44 +00:00
8ec38e8476
corrected linker options for blas
2014-02-14 15:59:25 +00:00
368de2f565
small fix on installation with imkl, need to try it out
2014-02-11 17:05:20 +00:00
25ee49ea78
fixed Abaqus test to run with new installation scheme
2014-02-05 06:38:31 +00:00
986591682c
remove equals sign in rpath definition to work with mac, changed linker options in compile_CoreModule to work with linux again, please let me know if mac doesn't work anymore (it should)
2014-01-30 13:07:44 +00:00
eeca9ed349
solved error: Undefined symbols for architecture x86_64: "_PyArg_ParseTupleAndKeywords" by adding arguments to LDFLAGS
2014-01-29 20:06:57 +00:00
34663daa99
rpath=argument syntax unfortunately not working on OS X, hence changed back to rpath,argument
2014-01-29 19:52:31 +00:00
f82e5ec26e
some small changes on the installation scripts, IMKL now works with gfortran, more verbosity and more sanity checks
2014-01-29 12:20:56 +00:00
ee99216edc
polishing compile_CoreModule, bug fix for Makefile
2014-01-28 07:34:13 +00:00
4648da1f32
small changes, tests still not running
2014-01-27 22:06:39 +00:00
b11c64d310
polishing
2014-01-27 16:24:07 +00:00
861dc76700
fixed test for compilation of core module
2014-01-27 16:07:52 +00:00
36812cd6ea
fixed some testing scripts to run with the new installation
2014-01-27 15:09:38 +00:00
02441bef0f
introduced rpath to tell executable where libraries are located
2014-01-27 14:10:49 +00:00
656e3cc6ca
some more small changes, including bug fix in configure + relative linking in Makefile for spectral solver
2014-01-27 10:12:29 +00:00
081d4da768
fixed path
2014-01-24 13:47:46 +00:00
554a6ab738
fixed typos and missing include
2014-01-24 13:17:54 +00:00
a6dac1eceb
fixed lib to use new config file
2014-01-24 13:15:01 +00:00
d66b41c686
fixed installation, will test now
2014-01-24 12:30:27 +00:00
c9c6588f7c
renamed seeds file related scripts in a (hopefully) consistent manner
2014-01-23 20:48:33 +00:00
3e697e006a
added (again) Intel OpenMP library to linker flag list (-liomp5). Why was that dropped..?
2014-01-22 23:57:08 +00:00
380f6e1ec5
fixed syntax bugs
2014-01-22 16:03:27 +00:00
e81b798662
corrected shell extension for apply_DAMASK_modifications.sh (was py)
2014-01-18 18:00:28 +00:00
fc7fd80e9c
following convention of ".py" extension for Python scripts (now also compatible with new Makefile)
2014-01-16 21:53:14 +00:00
278f854e41
introduced functionality to get output results by point from the HDF5 file
2014-01-15 22:17:32 +00:00
cf318f4392
fixed bug in lapack
2014-01-14 22:50:57 +00:00
449c66c70f
did some testing...
2014-01-14 19:32:55 +00:00
01c8c434f7
finished work on the new installation scheme (if no bugs are found ;))
2014-01-14 19:03:41 +00:00
3d69d9b927
moved DAMASK_NUM_THREADS to options, DAMASK_env.sh gets it from there
2014-01-13 10:56:54 +00:00
aab0208c65
more modifications, only configure needs modifications
2014-01-12 17:29:00 +00:00
80da1c529e
some more work on the consistent installation scheme, fixed bug in Makefile
2014-01-11 19:13:02 +00:00
4271f65d05
textfile containing options (like pathinfo, but extended and will be directly used by the Makefile)
2014-01-11 17:16:51 +00:00
2262098ed4
more work on new installation
2014-01-11 14:28:07 +00:00
e025ac5952
fixed DAMASK_env.sh to work with linux and Mac, started to reorganize installation to be consistent for all solvers
2014-01-11 12:46:30 +00:00
9a2ad45f7a
probably(?) fixed bug with Windows: comparison string should be 'Windows' not 'Windos' , I suppose
2014-01-02 15:08:09 +00:00
65de581f72
new script setup_env.py to modify DAMASK_env files, will replace setup_shellrc.py
2013-12-21 11:57:02 +00:00
543639bb8f
added support for Marc/Mentat2013.1
2013-12-19 13:37:35 +00:00
bb0b35e466
made compilation_info.f90 windows compatible and added abaqus_v6_windows.env as a template for using DAMASK with windows.
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Deleted old fftw and ACML installation instruction (can be found on damask.mpie.de)
2013-10-10 09:38:31 +00:00
1593daea97
exchanged order of asking for BLASDIR and BLASTYPE. now type comes first (otherwise you may not know your options...)
2013-09-23 19:27:34 +00:00
5bb9c95245
removed compiler option '-diag-enable sc3' from openMP compiler calls as it does not work together
2013-08-08 14:47:04 +00:00
7415c934c5
fixed too long lines in Fortran commands with openMP
2013-08-08 07:53:51 +00:00
1c933bd39a
added possibility to create damsk symlinks in /usr/local/bin, that's where also marc mentat links are placed by default
2013-08-02 13:55:06 +00:00
f896b4a01e
updated Marc/Mentat integration once more to minimze interference with original instal
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added support for Marc2013, which is now default in apply_DAMASK_modifications
2013-07-24 08:41:58 +00:00
a7b6093edc
fixed bug in include_linux64 for Marc 2012, tests should run again after updating the copy in /msc/....
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polished two other versions of this file
unified output format for /echo/ in material.f90
2013-06-11 07:28:08 +00:00
6b7a69fea6
Layout compromise between classic and new Mentat
2013-04-29 14:27:25 +00:00
29a6d4f901
new Mentat integration; thre is a DAMASK menu now in jobs/run
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our installations will be updated one by one, so watch out for the new menu!
2013-04-26 13:43:10 +00:00
8da7544978
marc doesn't need error prone setup_code any more, moved Marc includes from code/include to lib/includeMarc
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DAMASK_marcXXXX.f90 now is not a copy any more but contains one definition and an include statement
setup_code of spectral solver is now replaced by the standard 1) configure 2) make 3) make install
2013-04-22 14:41:33 +00:00
2a6f66d504
Abaqus explicit now with correct interface, seems to work now
2013-03-21 17:24:58 +00:00
48e57fc3cb
removed -save option from all compiler calls using openMP
2013-03-06 07:45:45 +00:00
80a20d5ea9
continuation of last commit
2013-02-01 13:22:40 +00:00
3ffd6499b1
change bash-only "let" to "`expr`", abaqus_v6.env now suppresses warnings about long lines (there are only comments anyway)
2013-01-28 15:30:51 +00:00
41c5e43377
reduced optimization level to 01 as O2 gives the following runtime error:
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/abaqus/6.12-2/code/bin/standard.exe: symbol lookup error: /tmp/f.roters_input_hbc_29668/libstandardU.so: undefined symbol: for_simd_random_number
2012-12-21 15:09:34 +00:00
93a5a0be50
updated Marc/Mentat scripts
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submit1 now usese O1 optimization
submit2 now usese O2 optimization
submit3 now usese O1 optimization plus openMP
added posibility to choose preferred editor in apply_DAMASK_modifications
2012-11-13 15:27:06 +00:00
339205c890
added missing quotes
2012-10-25 07:56:58 +00:00
0e33725395
switched to general logic that branches locally depending on shell type.
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now bash and csh derivatives should work.
2012-10-18 09:55:54 +00:00
71e1d4d5bb
substituted old patched FFTW with new, now unpatched, version
2012-10-05 17:27:40 +00:00
48a9104b7e
corrected fortran compile command and added comments on the compiler switches
2012-10-05 17:22:45 +00:00
73349d02f5
merged precision info into the file prec.f90 and removed prec_single.f90
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precision information is now parsed as a makro, defined by the compiler, eg. -DFLOAT=8 for 8 byte long floats or -- in case no values is given -- for the FEM wrapper by the interface files.
Please don't forget to run setup_code.py !!!!!!!!!!!
abaqus_v6.env is adjusted to specify the standard precision (float=8, int=4) and got some extra compilation options, some deprecated warning supressors are removed
Optional Marc modification will follow that allow automatic selection of suitable precision
2012-08-28 16:08:17 +00:00
beda30302a
setup_shellrc.py now creates .bashrc if no file for login startup information is found
2012-06-22 14:18:42 +00:00
5923d6b413
changed default Marc version to 2012
2012-06-20 06:40:34 +00:00
15c8a6b0ac
FFTW is no longer needed for the FEM subroutine
2012-06-19 08:05:47 +00:00
976564b74e
modifications for Marc/Mentat2012
2012-06-13 07:32:20 +00:00
1a96a9fbad
now based on abq6111
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now using ifort in $PATH
2012-05-16 06:57:37 +00:00
93f311f2b9
now skips environment variables in comments, i.e. after '#'
2012-01-31 15:43:39 +00:00
0b5a1a8925
removed some no longer used defaults
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added library path for fftw
2012-01-17 08:37:09 +00:00
37807ff6ca
added reporting of files altered by the script
2012-01-11 17:30:27 +00:00
7827364908
improved subtitution/deletion handling
2012-01-11 16:38:23 +00:00
c052e3d5d2
path to fftw3 lib is now set (hopefully, mandatory) with LD_LIBRARY_PATH (via setup_shellrc.py...)
2011-12-22 10:41:17 +00:00
8535421429
killed obsolete "--heap-arrays" comment
2011-12-22 10:21:50 +00:00
b12c6672d6
corrected LD_LIBRARY_PATH processing of LAPACK and added FFTW to it.
2011-12-21 13:13:11 +00:00
8bf3cc3a3f
exchanged fftw3.3 source with patched one (now containing set_timelimit wrapper in api/f77funcs.h)
2011-12-21 12:48:20 +00:00
0695bfd315
updated instructions
2011-12-21 09:35:47 +00:00
fcfc8d9402
corrected small syntax error
2011-12-20 13:58:30 +00:00
34d56548ad
corrected librarypath for fftw
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removed fftw3_threads
2011-12-20 13:52:19 +00:00
ee3049b761
corrected syntax errors
2011-12-20 12:53:19 +00:00
485ed3742c
now aware of empty lines
2011-12-20 11:04:29 +00:00
7dff3ba12c
reworked script...
2011-12-20 10:52:58 +00:00
2b42896ef6
added parsing of comments (# comment here...)
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added "lib64" as possible location (sub-directory) for liblapack.a
2011-12-20 10:19:48 +00:00
2b6cb3bd84
added linking option for FFTW.
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which LAPACK installation is used can now be selected by switching on IKML, ACML, or LAPACK path (in that order of preference)
(multiuser environments now need to have system-wide installation locations for those libraries, since run_*_marc scripts are set once and for all to use them.)
2011-12-20 09:47:27 +00:00
c4a4c5cdca
corrected error in apply_DAMASK_modifications
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added support for Marc/Mentat2011 (classic)
2011-12-19 16:06:03 +00:00
031a00237f
improved makefile, no directly linking to files of acml
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corrected default pathinfo
improved test for intel compiler
2011-12-09 16:34:53 +00:00
1f1046ecc5
removed option -heap arrays from all compiler calls use 'ulimit -s unlimited' on the command line instead
2011-12-01 08:54:26 +00:00
4137d1f9af
fixed stupid lower case typo in pathInfo assignment
2011-11-29 17:40:11 +00:00
12bf99c2f9
removed option -extend_source from compile_fortran command definition as it also seems to influence allowed line length for free format files
2011-11-28 08:19:55 +00:00
db09a8b17a
removed ACML from public part and adjusted install instructions accordingly.
2011-11-14 15:21:12 +00:00
413805e589
now aware of ACMLpathinfo
2011-11-14 14:59:16 +00:00
eebb59d146
now environment vars are processed in known order. gracefully put own extensions to end of existing (e.g. PATH=$PATH:ourStuff)
2011-11-09 17:20:20 +00:00
314caffc08
safe against partially matching envVars. pythonPath and Path for instance...
2011-11-09 16:41:44 +00:00
41b8232695
setup_shellrc now adds $DAMASK_ROOT/bin to the $PATH
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in setup/setup_processing.py uncomment 3 lines to remove the links from your ~/bin
2011-11-09 16:20:52 +00:00
8e34309b6e
renamed to .py so notepad++ users can have syntax highlighting
2011-11-09 13:31:59 +00:00
a66c502617
made it more flexible to future envVar additions and csh implementation...
2011-11-09 10:38:57 +00:00
583abf7ee6
renamed script
2011-11-07 10:53:34 +00:00
313cd2edb3
ACML path example now more realistic.
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corrected dangerous overwriting of LD_LIBRARY_PATH and PYTHONPATH.
2011-11-04 15:42:52 +00:00
1e35e98866
installation script to put correct LD_LIBRARY_PATH and PYTHONPATH into shell.rc
2011-11-03 17:35:47 +00:00
b9647b2584
moved parts into new "lib" folder
2011-11-03 13:21:11 +00:00
9565852247
now checks file "processing/MSCpath" for predefined installdir.
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now checks validity of user-specified install version.
2011-10-20 16:13:38 +00:00
64499328d1
general renaming (space in former ACML path did not work)
2011-10-20 12:25:39 +00:00
c7c541f393
corrected typos and such
2011-09-13 15:57:58 +00:00
60ef9d5ab0
updated installation instructions
2011-09-13 07:58:54 +00:00
d4e7d6e02f
added $Id$ and some further comments
2011-08-26 07:29:55 +00:00
92d7dcb3f4
added modfiles for Marc/Mentat2010.2
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Marc/Mentat2010.2 is installed on msuws1 only right now, please test!
simply start metat2010.2 instead of mentat2010
2011-07-28 07:27:39 +00:00
f24da6dffe
added comment on precompiling the subroutine into a library
2011-05-26 09:38:48 +00:00
e563d539a6
added openmp flag to compiler call
2011-05-19 22:46:09 +00:00
d366a53f4e
probably installation is a better place for the abq.env file
2011-05-11 17:10:45 +00:00
a9774df43b
added comment on need to install AMD Core Math Library
2011-04-13 09:06:58 +00:00
1b3dba4113
added -fpp switch to all compiler calls to explicitly use the precompiler
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removed -save from OpenMP compiler calls to use OpenMP auto behaviour
2011-03-28 12:18:15 +00:00
8467c91dab
moved setup scripts back to subdirs where they are needed
2011-03-22 15:42:53 +00:00
8bef254be7
changed name to include *.py ending to make Windows file association work again
2011-03-21 11:58:24 +00:00
1f0569230b
new installation/setup dir to hold all top-level make_*-scripts
2011-03-11 09:20:37 +00:00
cdeb786721
added default path of ACML
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BLAS now also works on msuws2
2011-02-14 15:03:45 +00:00
bf2082a15b
marc run scripts now link against ACML (AMD Core Math Library) to enable use of BLAS routines
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ACML has certainly to be installed first (currently on msuws1 only) and is included for this purpose
2011-02-14 14:25:16 +00:00
4216a3e066
corrected name of include file
2010-11-24 07:55:08 +00:00
c07a91d19e
removed -save option from the compile statement using OpenMP
2010-11-23 16:25:58 +00:00
af2437c0af
removed hardwired installation directory from submitX scripts and added corresponding flexibility into make script
2010-08-17 21:22:24 +00:00
c7e5cb9806
reworked verbosity and structure of installation script
2010-07-30 19:39:54 +00:00
5a0963fb81
added variable working dir (if apply_script is called from somewhere else) and made the script executable
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why using "comp_user?*" instead of "comp_user*" ?? (@Franz...)
2010-05-06 14:17:53 +00:00
4954228b3a
forgot to change this file accordingly (main.msb revmoved)
2010-05-06 13:19:45 +00:00
f1950cacc9
corrected apply script
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removed binary menu file, it is now created by the apply script
2010-05-06 13:17:28 +00:00
383a36b226
added comment on reformating to common block files
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added modifications necessary for running the subroutine with Marc/Mentat2010
2010-05-06 08:50:54 +00:00
Martin Diehl