introduced rpath to tell executable where libraries are located
This commit is contained in:
Martin Diehl
parent
a1cfc85d74
commit
02441bef0f
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@ -25,24 +25,25 @@ if [ ! -z "$PS1" ]; then
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echo Using environment with ...
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echo "DAMASK installation in $DAMASK_ROOT"
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echo "DAMASK_NUM_THREADS=$DAMASK_NUM_THREADS"
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echo "F90=$F90"
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echo "FFTW_ROOT=$FFTW_ROOT"
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echo "Compiler: F90=$F90"
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if [ "x$LAPACK_ROOT" != "x" ]; then
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echo "LAPACK_ROOT=$LAPACK_ROOT"
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echo "LAPACK libaries located in $LAPACK_ROOT"
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fi
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if [ "x$ACML_ROOT" != "x" ]; then
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echo "ACML_ROOT=$ACML_ROOT"
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echo "ACML libaries located in $ACML_ROOT"
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fi
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if [ "x$IMKL_ROOT" != "x" ]; then
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echo "IMKL_ROOT=$IMKL_ROOT"
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echo "IMKL libaries located in $IMKL_ROOT"
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fi
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echo "MARC_ROOT=$MARC_ROOT"
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echo "HDF5_ROOT=$HDF5_ROOT (future use)"
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echo "MSC.Marc root $MARC_ROOT"
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echo "FFTW libaries located in $FFTW_ROOT"
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echo "HDF5 libaries located in $HDF5_ROOT (future use)"
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fi
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ulimit -s unlimited
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ulimit -c 0
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ulimit -v unlimited
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ulimit -m unlimited
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export PYTHONPATH=$PYTHONPATH:$DAMASK_ROOT/lib
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unset DAMASK_ROOT
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unset DAMASK_ROOT LAPACK_ROOT ACML_ROOT IMKL_ROOT MARC_ROOT FFTW_ROOT HDF5_ROOT
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7
Makefile
7
Makefile
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@ -2,6 +2,13 @@ SHELL = /bin/sh
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########################################################################################
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# Makefile for the installation of DAMASK
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########################################################################################
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.PHONY: all
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all:
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spectral
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marc
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processing
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install
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.PHONY: spectral
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spectral:
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@$(MAKE) clean -C code >/dev/null
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@ -41,12 +41,12 @@ else
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include /etc/damask.conf
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endif
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COMPILERNAME ?= $(F90)
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INCLUDE_DIRS :=-I../lib
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LIBRARIES :=-lfftw3
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LIB_DIRS :=-L$$FFTW_ROOT/lib
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LIB_DIRS :=-L$(FFTW_ROOT)/lib
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RUN_PATH :=-Wl,-rpath,$(FFTW_ROOT)/lib
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ifeq "$(FASTBUILD)" "YES"
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OPENMP := OFF
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@ -94,29 +94,30 @@ IMKL_ARCH =_sequential
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endif
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ifneq "x$(IMKL_ROOT)" "x"
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LIB_DIRS :=-L$$IMKL_ROOT/lib/intel64
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LIB_DIRS :=-L$(IMKL_ROOT)/lib/intel64
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RUN_PATH +=$(RUNPATH) -Wl,-rpath,$(IMKL_ROOT)/lib/intel64
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INCLUDE_DIRS +=-I$(IMKL_ROOT)/include
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LIBRARIES +=-lmkl_intel_lp64 -lmkl_core -lmkl$(ACML_ARCH) -lm -lpthread -liomp5
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else
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ifneq "x$(ACML_ROOT)" "x"
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LIB_DIRS +=-L$$ACML_ROOT/$(F90)64$(ACML_ARCH)/lib
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LIB_DIRS +=-L$(ACML_ROOT)/$(F90)64$(ACML_ARCH)/lib
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RUN_PATH +=$(RUNPATH) -Wl,-rpath,$(ACML_ROOT)/$(F90)64$(ACML_ARCH)/lib
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LIBRARIES +=-lacml$(ACML_ARCH)
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else
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ifneq "x$(LAPACK_ROOT)" "x"
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LIB_DIRS +=-L$$LAPACK_ROOT/lib64 -L$$LAPACK_ROOT/lib
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LIB_DIRS +=-L$(LAPACK_ROOT)/lib64 -L$(LAPACK_ROOT)/lib
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RUN_PATH +=$(RUN_PATH) -Wl,-rpath,$(LAPACK_ROOT)/lib64 -Wl,-rpath,$(LAPACK_ROOT)/lib
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LIBRARIES +=-llapack
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endif
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endif
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endif
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#hdf5
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ifeq "$(HDF5)" "ON"
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LIBRARIES +=-lhdf5hl_fortran -lhdf5_hl -lhdf5_fortran -lhdf5
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LIB_DIRS +=-L$$HDF5ROOT/lib
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INCLUDE_DIRS +=-I$(HDF5ROOT)/include -DHDF
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LIB_DIRS +=-L$(HDF5_ROOT)/lib
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RUN_PATH +=$(RUNPATH) -Wl,-rpath,$(HDF5_ROOT)/lib
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INCLUDE_DIRS +=-I$(HDF5_ROOT)/include -DHDF
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endif
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ifdef PETSC_DIR
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@ -360,7 +361,7 @@ endif
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DAMASK_spectral.exe: DAMASK_spectral_driver.o
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$(PREFIX) $(COMPILERNAME) $(OPENMP_FLAG_$(F90)) $(OPTIMIZATION_$(MAXOPTI)_$(F90)) $(STANDARD_CHECK_$(F90)) \
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-o DAMASK_spectral.exe DAMASK_spectral_driver.o \
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$(COMPILED_FILES) $(LIB_DIRS) $(LIBRARIES) $(SUFFIX)
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$(COMPILED_FILES) $(LIB_DIRS) $(LIBRARIES) $(RUN_PATH) $(SUFFIX)
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DAMASK_spectral_driver.o: DAMASK_spectral_driver.f90 DAMASK_spectral_solverBasic.o $(PETSC_FILES)
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$(PREFIX) $(COMPILERNAME) $(COMPILE_MAXOPTI) -c DAMASK_spectral_driver.f90 $(SUFFIX)
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@ -142,7 +142,7 @@ if options.compiler not in ['ifort','gfortran']:
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if not subprocess.call(['which', options.compiler],stdout=subprocess.PIPE, stderr=subprocess.PIPE) == 0:
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print('Compiler Warning: executable %s not found!'%options.compiler)
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for lib in ['libfftw3.a','libfftw3.a']:
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for lib in ['libfftw3.so','libfftw3.a']:
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if not os.path.isfile(os.path.join(options.fftwRoot,'lib/%s'%lib)):
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print('FFTW Warning: %s not found in %s!'%(lib,os.path.join(options.fftwRoot,'lib')))
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@ -154,16 +154,16 @@ if options.blasType == 'LAPACK':
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blasLocation = os.path.join(options.blasRoot,'lib64')
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else:
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blasLocation=os.path.join(options.blasRoot,'lib')
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for lib in ['liblapack.a','liblapack.a']:
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for lib in ['liblapack.so','liblapack.a']:
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if not os.path.isfile(os.path.join(blasLocation,lib)):
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print('LAPACK Warning: %s not found in %s!'%(lib,blasLocation))
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elif options.blasType == 'ACML':
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blasLocationSerial=os.path.join(options.blasRoot,'%s64/lib'%options.compiler)
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for lib in ['libacml.a','libacml.a']:
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for lib in ['libacml.so','libacml.a']:
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if not os.path.isfile(os.path.join(blasLocationSerial,lib)):
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print('ACML Warning: %s not found in %s!'%(lib,blasLocationSerial))
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blasLocationParallel=os.path.join(options.blasRoot,'%s64_mp/lib'%options.compiler)
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for lib in ['libacml_mp.a','libacml_mp.a']:
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for lib in ['libacml_mp.so','libacml_mp.a']:
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if not os.path.isfile(os.path.join(blasLocationParallel,lib)):
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print('ACML Warning: %s not found in %s!'%(lib,blasLocationParallel))
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elif options.blasType == 'IMKL':
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@ -173,6 +173,7 @@ elif options.blasType == 'IMKL':
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blasLocation=os.path.join(options.blasRoot,'lib/intel64')
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for lib in ['libmkl_core.so','libmkl_core.a',\
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'libmkl_sequential.so','libmkl_sequential.a',\
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'libmkl_intel_thread.so','libmkl_intel_thread.a',\
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'libmkl_intel_lp64.so','libmkl_intel_lp64.a']:
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if not os.path.isfile(os.path.join(blasLocation,lib)):
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print('IMKL Warning: %s not found in %s!'%(lib,blasLocation))
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@ -23,20 +23,29 @@ compilers = ['ifort','gfortran']
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if options['F90'] not in compilers:
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sys.exit('compiler "F90" (in installation/options or as Shell variable) has to be one out of: %s'%(', '.join(compilers)))
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compileCommand = {
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'gfortran': 'gnu95 --f90flags="-fPIC -fno-range-check -xf95-cpp-input -std=f2008 -fall-intrinsics'+\
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' -DSpectral -fdefault-real-8 -fdefault-double-8 -DFLOAT=8 -DINT=4 -I%s/lib"'%damaskEnv.rootDir(),
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'ifort': 'intelem --f90flags="-fPIC -fpp -stand f08 -diag-disable 5268 -assume byterecl'+\
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' -DSpectral -real-size 64 -integer-size 32 -DFLOAT=8 -DINT=4 -I%s/lib"'%damaskEnv.rootDir(),
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compiler = {
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'gfortran': '--fcompiler=gnu95 --f90flags="-fPIC -fno-range-check -xf95-cpp-input -std=f2008 -fall-intrinsics'+\
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' -fdefault-real-8 -fdefault-double-8"',
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'ifort': '--fcompiler=intelem --f90flags="-fPIC -fpp -stand f08 -diag-disable 5268 -assume byterecl'+\
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' -real-size 64 -integer-size 32"',
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}[options['F90']]
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# option not depending on compiler
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compileOptions =' -DSpectral -DFLOAT=8 -DINT=4 -I%s/lib'%damaskEnv.rootDir()
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# this saves the path of libraries during runtime
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LDFLAGS ='-Wl,-rpath,%s/lib'%(options['FFTW_ROOT'])
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# see http://cens.ioc.ee/pipermail/f2py-users/2003-December/000621.html
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if options['IMKL_ROOT'] != '' and options['F90'] != 'gfortran':
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lib_lapack = '-L$IMKL_ROOT/lib/intel64 -I%s/include -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -liomp5'%options['IMKL_ROOT']
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lib_lapack = '-L%s/lib/intel64 -lmkl_intel_lp64 -lmkl_core -lmkl_sequential -lpthread -lm -liomp5'%options['IMKL_ROOT']
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LDFLAGS +=' -Wl,-rpath,%s/lib/intel64'%(options['IMKL_ROOT'])
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elif options['ACML_ROOT'] != '':
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lib_lapack = '-L$ACML/%s64/lib -lacml'%options['F90']
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lib_lapack = '-L%s/%s64/lib -lacml'%(options['ACML_ROOT'],options['F90'])
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LDFLAGS +=' -Wl,-rpath,%s/%s64/lib'%(options['ACML_ROOT'],options['F90'])
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elif options['LAPACK_ROOT'] != '':
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lib_lapack = '-L$LAPACK_ROOT/lib -L$LAPACK_ROOT/lib64 -llapack'
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lib_lapack = '-L%s/lib -L%s/lib64 -llapack'%(options['LAPACK_ROOT'],options['LAPACK_ROOT'])
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LDFLAGS +=' -Wl,-rpath,%s/lib -Wl,-rpath,%s/lib64'%(options['LAPACK_ROOT'],options['LAPACK_ROOT'])
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os.chdir(codeDir) # needed for compilation with gfortran and f2py
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try:
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@ -55,7 +64,8 @@ except OSError, e:
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#' --overwrite-signature --no-lower prec.f90 DAMASK_spectral_interface.f90 math.f90 mesh.f90,...'
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###########################################################################
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cmd = 'f2py damask.core.pyf' +\
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' -c --no-lower --fcompiler=%s'%(compileCommand) +\
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' -c --no-lower %s'%(compiler) +\
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compileOptions+\
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' prec.f90'+\
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' DAMASK_spectral_interface.f90'+\
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' IO.f90'+\
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@ -66,12 +76,16 @@ cmd = 'f2py damask.core.pyf' +\
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' FEsolving.f90'+\
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' mesh.f90'+\
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' core_quit.f90'+\
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' -L$FFTW_ROOT/lib -lfftw3'+\
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' -L%s/lib -lfftw3'%(options['FFTW_ROOT'])+\
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' %s'%lib_lapack
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# f2py does not (yet) support setting of special flags for the linker, hence they must be set via
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# environment variable
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my_env = os.environ
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my_env["LDFLAGS"] = LDFLAGS
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print('Executing: '+cmd)
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try:
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subprocess.call(shlex.split(cmd))
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subprocess.call(shlex.split(cmd),env=my_env)
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except subprocess.CalledProcessError:
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print('build failed')
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except OSError:
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@ -60,13 +60,13 @@ BLASDIR=${BLASDIR%/} # remove trailing slash
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case $BLASTYPE in
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IMKL | imkl)
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BLAS=" -mkl"
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BLAS=" -mkl=sequential -lpthread -lm -rpath=$BLASDIR/lib/intel64" #rpoath
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;;
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ACML | acml)
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BLAS=" -L$BLASDIR/ifort64_mp/lib -lacml_mp"
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BLAS=" -L$BLASDIR/ifort64/lib -lacml -rpath=$BLASDIR/ifort64/lib"
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;;
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LAPACK | lapack)
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BLAS=" -L$BLASDIR/lib64 -L$BLASDIR/lib -llapack"
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BLAS=" -L$BLASDIR/lib64 -L$BLASDIR/lib -llapack -rpath=$BLASDIR/lib64 -rpath$BLASDIR/lib"
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;;
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*)
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echo "error, BLAS type must be IMKL, ACML, or LAPACK"
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