05fa8bf580
make data_append() coping with any iterable data type (not just list)
2013-11-25 18:58:27 +00:00
9ac8846e41
compiling with hdf5 is now working for DAMASK (if HDF5=ON) and for playground example in private
2013-11-07 12:52:36 +00:00
c496288144
make "orientation" module part of damask python interface
2013-10-08 13:56:28 +00:00
ec6440f1f4
when adding labels now making sure that they get processed during output writing
2013-10-08 13:54:13 +00:00
a2169e338f
fixed type-casting problems (mainly with Lib_VTK_IO)
2013-09-26 17:21:46 +00:00
9f39405adf
fixed material.config of elastic tests to run with new error, currently to strict, needs fix
...
removed long spectral example test from list of daily tests
2013-09-20 16:23:52 +00:00
a0f304021f
fixed restarting for Polarisation and AL, updated corresponding test and polished output in python (some statements are screwed up when making them Python3 compatible)
2013-09-20 14:22:37 +00:00
415892b8e7
did some conversion needed for use with python 3
2013-09-18 19:31:27 +00:00
59ba41e9e7
forgot this in last commit
...
Important: Do not update only the code dir, also the lib dir
2013-09-18 14:14:39 +00:00
3eb8aa1362
checked for python3 compatibility:
...
use "print('foo')" instead of "print 'foo'"
and "except(error) as e" instead of "except error,e"
2013-09-14 10:52:02 +00:00
3bb5a5e7b5
line too long in DAMASK_spectral_solverPolarisation.f90, reordered curl calculation for clearer look, fixed test for Marc 2013
2013-08-08 18:10:58 +00:00
4cb6c0a706
added support for MSC.Marc>2013 to tools (execution with option for optimization (h/l/-) and OpenMP (True/False)
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added test for MSC.Marc2013
removed automated test run for MSC.Marc 2010, hast to run on a different machine and is deprecated anyway
2013-08-08 09:12:44 +00:00
cc6c524740
updated test for spectral solver example and example files. changed marc job submission such that the marc version number is no longer expected at the end of the subroutine file
2013-08-06 09:48:57 +00:00
f896b4a01e
updated Marc/Mentat integration once more to minimze interference with original instal
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added support for Marc2013, which is now default in apply_DAMASK_modifications
2013-07-24 08:41:58 +00:00
9abc9a99fc
added possibility to
...
* read ASCIItable not having labels
* write numpy array as data
2013-06-30 00:21:51 +00:00
fab0ea8e4e
interpolation method is now an attribute of the Colormap class; added classic "rainbow" colorscheme to predefined ones
2013-05-28 20:15:13 +00:00
65c5090378
added option to linearly interpolate colors to Colormap class
2013-05-28 17:33:51 +00:00
2784a96a51
do not print colormap name for format=raw
2013-05-28 14:45:53 +00:00
7c42facfe0
predefined colormaps now as class attribute of "Colormap"
2013-05-28 14:04:25 +00:00
ee2595c008
added method to use predefined colormaps
2013-05-28 13:50:36 +00:00
4fda285e08
added method to invert colormap
2013-05-28 12:18:25 +00:00
d01a8bdf8c
renamed methods "to" and "asModel" to more (?) meaningfull "convertTo" and "expressAs"
2013-05-28 11:47:15 +00:00
8421587724
added some space here and there for more readability
2013-05-28 11:39:26 +00:00
190a59b707
set Lib_VTK_IO-master.zip and related files back to initial version, new version is not working with MSC.Marc 2010
2013-05-15 16:43:18 +00:00
b83b557af2
updated Lib_VTK_IO again. Contains small bug fix ans support for Base64 encoding
2013-05-10 12:57:00 +00:00
cfac73043d
some lines in crystallite.f90 exceeded limit of 132 characters
...
fixed bug in Lib_VTK_IO.f90 (informed author as well)
added zip file containing source of Lib_VTK_IO.f90
2013-05-08 17:48:00 +00:00
755e0e2440
vtk files are now correctly written to current working directory.
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updated Lib_VTK_IO.f90
2013-05-08 16:10:21 +00:00
3f9d642d87
corrected error message when complaining about uncompiled core module
2013-04-29 16:30:08 +00:00
8da7544978
marc doesn't need error prone setup_code any more, moved Marc includes from code/include to lib/includeMarc
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DAMASK_marcXXXX.f90 now is not a copy any more but contains one definition and an include statement
setup_code of spectral solver is now replaced by the standard 1) configure 2) make 3) make install
2013-04-22 14:41:33 +00:00
d751283b4a
updated fftw to 3.3.3 (from 3.3.2)
2013-04-16 16:38:54 +00:00
ee22a2698b
added library to write out vtk file from Fortran (Lib_VTK_IO)
2013-04-16 10:20:22 +00:00
aee8196b32
example test for Abaqus now takes files from examples folder, both Abaqus test take now *.env from installation/mods_abaqus
2013-03-26 12:06:19 +00:00
7fd1dca4f5
corrected a little mistake on line 145 that sets the maximum value of XYZ values to be 1.0
2013-03-25 20:18:30 +00:00
cb8a7e7d25
new function to compare tables both located in current directory
2013-03-19 15:46:07 +00:00
43ec1d2051
added output of perceptual unfiform colormaps to GOM (DIC Aramis) format, deleted some old files in the documentation folder
2013-03-19 15:19:46 +00:00
3660b2a245
added functionality to check for available licenses to damask/environment.py, now using this functionality + a check for the correct version before starting Abaqus6.12.2_compileIfort/run_test.py and Abaqus6.12.2_example/run_test.py
2013-03-04 19:39:13 +00:00
b94caae041
added missing import of os
2013-02-19 15:57:51 +00:00
d8da2f60d8
added core module function math_periodicNearestNeighborDistances
2013-02-19 14:56:26 +00:00
0047c32411
dropped ./fftw in favor of /usr/local as FFTW default install path
2013-02-19 13:35:38 +00:00
9d32e51da8
more verbose explanations
2013-02-15 08:38:58 +00:00
fc9ecc7ed5
fixed bugs in HSL2RGB and the two CIE conversions.
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streamlined interpolation.
2013-02-02 20:17:02 +00:00
95c74961dd
polished syntax here and there.
2013-02-02 15:11:55 +00:00
b0263a8aab
added possibility to parse options for setup_code.sh and setup_processing.sh + other improvements in setup functionality
2013-02-01 12:21:56 +00:00
0dabe29657
ignore problems when importing (outdated) core module during its rebuilding.
2013-02-01 11:45:20 +00:00
20060b4275
added pathInfo parsing of $shellVariables. These are now interpreted as absolute path (used to be wrongly considered relative...)
2013-02-01 11:30:57 +00:00
e74b5da19a
changed all remaining routines to fortran-fast arrays (geometry reconstruction etc.)
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changed all remaining routines in f2py to more clever determination of array size (requires f2py >= 2.0)
enabled 3D visualize to work with odd resolution by switching to linear reconstruction
PLEASE NOTE: Redefinition of routines for f2py might cause trouble -> DELETE DAMASK_ROOT/lib/damask/core.so in this case
further changes: added pure statement where possible, polished, unified use of "Q" for "Quaternion" and reordered math to have similar routines together
2013-01-31 16:28:08 +00:00
96577b18fb
introduced error code for run_test.py
2013-01-23 18:33:46 +00:00
a1f0ed483c
export method with format and revised crop options added to the Colormap class.
2013-01-18 17:17:50 +00:00
b018934b45
simplified code, added functionality to export raw list
2013-01-16 18:45:10 +00:00
7ac7d1a657
new tool for creation of colormaps, now using proper classes
2013-01-15 18:24:10 +00:00
0d4db957f8
started to rearrange testing folder
2013-01-14 15:20:17 +00:00
fd0e096256
rewrote colormaps to use classes
2013-01-08 18:47:44 +00:00
820b8eb2c1
put colormap related functions into library, renamed and added scripts for creation of colormaps
2013-01-04 13:57:36 +00:00
e3970ce152
added detection of Marc 2012 in postResults (lib/damask/solver/marc.py)
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added test for Marc 2012 and updated old tests from 2010 to 2012
2012-12-13 17:50:00 +00:00
7848e933bb
wrong file was selected during last commit
2012-12-12 17:10:04 +00:00
dc746119e3
introduced two more helper functions:
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- labels_index
- data_asArray
2012-12-06 21:46:19 +00:00
549ea3c1e6
updated restart test to use the new table comparison facilities and check the new basic solver (part 1, there is some problem with renaming)
2012-11-23 17:21:18 +00:00
11ed7fab86
corrected bug in curl calculation causing the output of transposed tensor (according to information stored in testing/9102/proof/Curl of Tensor - Physics Forums.pdf)
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addCurl test is now done against analytical solution and working, added it to list of automated tests.
small improvements on test.py
2012-11-23 15:16:51 +00:00
565713fecb
improve functionality to compare ASCII tables
2012-11-22 18:01:51 +00:00
a40b73dc72
for array comparison, only values are taken into consideration that are non zero in array 1 AND array 2
2012-11-21 15:37:59 +00:00
78aa010565
now just comparing substring to figure out if setup_processing was importing the core module
2012-10-25 12:40:06 +00:00
868984cb89
import of damask.core will not complain any more if done in setup_processing.py, however setup_processing.py will check if core.so exist after compilation and delete it before compilation
2012-10-25 07:55:27 +00:00
398643a3b1
made exception in case of non-working f2py code (core.so) again verbose
2012-10-10 16:38:02 +00:00
7ad3ce62e7
added hint if test don't support update
2012-10-09 07:37:48 +00:00
1585fbe927
improved material.config writer class
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includes example of usage
should replace material.py, after the tests
have been confirmed to work with it
mat=damask.Material()
m=mat.example_1()
m.write(file='material.config_<descriptive-label>')
2012-09-07 18:25:25 +00:00
96ba5ecae4
moved some more 'mesh related' functions for post processing from math.f90 to mesh.f90
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f2py functions remaining in math.f90 now uses assumed size arrays in order to have simpler interfaces. This is only working with python 2.7!
changed python pre- and postprocessing scripts.
If you encounter any problems whith core modules, try to remove the old core.so in the lib/damask
2012-08-27 08:04:47 +00:00
87bec7eafa
added test to check if lab-to-load rotation is done properly, small improvement on test.py
2012-08-14 13:23:50 +00:00
ee1bde0cd7
enabling regridding more than once by introducing deallocation of arrays
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added J2 test (stub from Taymour)
2012-07-31 15:37:49 +00:00
8a64be7d1b
added restart-test to list of automated tests, improved reporting of tests
2012-07-26 07:47:31 +00:00
9078d70af0
polishing, and using numpy's deg2rad/rad2deg
2012-07-19 16:05:05 +00:00
b2a7f85101
__init__ of damask package not crashing in python 2.5 if core module not available
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added some Matlab-like utility functions (damask.sind, cosd, tand, acosd, ...) that take and return degree instead of radians
2012-07-18 13:46:33 +00:00
95d292b286
2012-07-18 12:31:07 +00:00
3cb1d7e31f
replaced FFTW libs with new version 3.3.2
2012-07-17 13:27:51 +00:00
fe3b537851
added some useful functions for copying and comparison and renamed some functions in the lib file; changed the tests accordingly
2012-07-17 13:04:57 +00:00
7847816044
changed back to previous (working) version
2012-07-05 20:27:05 +00:00
ca83c6082a
2012-07-05 11:21:06 +00:00
9490c8a3c1
corrected to consistent naming: "IMKL" finally ;-)
2012-07-03 12:59:19 +00:00
bf4d47266e
corrected to consistent naming: "IMKL"
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changed dummy entry for FFTW to usr/local
2012-07-03 12:41:29 +00:00
b2fd3e1180
introduced preprocessor identifiers Marc, Abaqus, and Spectral to enable conditional compilation. This allows deleted dummy functions that are used by one solver only.
...
Mainly affected modules are IO and mesh. Most of the changes in mesh result from reordering the functions when grouping them depending on their solver.
Further advantage is that FE solver do not need FFTW and kdtree2 anymore. The include files for these two libraries moved to DAMASKROO/lib now as I figured out how to use a include path in the Makefile.
Put all the files I got when testing compilation with abaqus in a folder which to become the abaqus compilation test.
2012-06-15 16:10:21 +00:00
e18a6f6c7f
again small adjustments for the automatic testing
2012-05-29 09:59:04 +00:00
34777e3df8
some smaller improvements on the intel compilation test
2012-05-25 15:11:00 +00:00
be355c8f40
updated reference result for compile test
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added dislotwin law to hex elastic test and drastically increased loading time. still the question why Young's modulo is increasing.
added possibility to add crystallite microstructure in material.py
2012-05-24 16:00:32 +00:00
77c066d0a8
corrected error handling to work with older python versions
2012-05-10 09:38:55 +00:00
331ef7ad68
made init of python module more verbose in case core modules cannot be loaded
2012-05-03 19:00:34 +00:00
31753be16f
updated setup/setup_processing.py with new files
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added data_readLine(LINE) and data_skipLines(LINES) for ascii table
2012-04-18 11:42:57 +00:00
efd653fb00
removed old *.output* and *.spectralOut as they are not updated anyway from reference.
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introduced a numbering scheme for variants
calculated new reference results due to slight changes
2012-03-09 16:30:42 +00:00
3f1c16e079
removed headerLen completely, use len(self.info)+1 instead
2012-03-09 14:18:48 +00:00
ee6b1eb22c
elastic phenopowerlaw for hex crystals is working, results are close to analytic ones but there is a small "elastic hardening" and the values are a little bit higher than the ones calculated with mtex
2012-02-24 14:34:44 +00:00
7ce583405f
made copy_Current2Current and copy_Current2Current in testclass more verbose, added numerics with fixed seed to compile test to get always exactly the same results
2012-02-23 17:44:09 +00:00
6b8bebad49
removed unused headerLen property. added info_clear() method
2012-02-23 13:54:38 +00:00
a8f4fc76b3
made results better visible
2012-02-23 09:23:37 +00:00
58fdf4ebfc
improved STDOUT | STDIN constructs -- no more broken pipe left-overs (I hope)
2012-02-16 18:42:04 +00:00
c24f258eba
now works with piped STDOUT | STDIN constructs.
2012-02-16 18:03:14 +00:00
ae8ec80dd0
croaking about missing core module now goes to STDERR (formerly this influenced piped STDOUT detrimentally...)
2012-02-16 18:02:15 +00:00
4c59015a78
further simplified creation of tests by moving the option parsing to the general test class
2012-02-15 20:54:14 +00:00
d642730776
added method to set data value in given column (by name)
2012-02-15 14:50:51 +00:00
8671b8ed38
script to delete existing columns from ASCIItable
2012-02-14 12:04:37 +00:00
7960600dbe
improved updating of reference results
2012-02-09 14:41:18 +00:00
a3e47b2d65
added method to return data as list of floats.
...
safer check whether ASCII file has ended.
2012-02-02 17:13:51 +00:00
7dd67e3ebb
improved creation of material.config files, mostly done by Philip
2012-02-01 19:44:36 +00:00
e87296b10a
added debug output for tests, corrected bug reporting number of successful tests
2012-01-31 13:10:14 +00:00
2a89d9b81a
simplified compilation testing by introducing some small helper functions for common tasks, continued to rename
2012-01-27 09:55:19 +00:00
20a775e8d1
small improvements (more output to screen)
2012-01-26 15:26:21 +00:00
becb863110
added test for gfortran and gfortran vs intel, renamed intel test to new numbering scheme and changed to new div criterion
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introduced "try" statement in lib/damask/test/test.py to avoid crash if a test variant fails
2012-01-25 15:14:31 +00:00
2b8e0b27fc
a rough version of a t16 to vtk converter
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needs polishing to be used with damask python package
paraview plotting is useful if you want semi-transparent iso-surfaces
2012-01-24 14:26:13 +00:00
3c87d20353
added capability to rewind to beginning of data
2012-01-19 20:37:53 +00:00
4eb754b1fb
added release '2011'.
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added toolsPath() method.
added optional release hinting for path determinations.
streamlined submit_job method.
2012-01-18 09:41:10 +00:00
0b4b154abb
reworked class definition.
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now follows workflow of
1. clean
2. prepare
3. run
4. postprocess
5. compare/update
added file-structural helper functions.
2012-01-18 09:34:49 +00:00
aba4703463
added property "headerLen"
2012-01-18 09:30:50 +00:00
7f94b3f267
subroutine path was not correct
2012-01-17 09:28:52 +00:00
684cac1206
corrected typo
2012-01-17 08:44:57 +00:00
48729ff2e1
modified testing class to use generic "damask" module.
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removed obsolete individual class definitions.
2012-01-16 15:18:43 +00:00
dd1e968908
setup_processing.py uses damask module but builds the core part of it, therefore made the use damask.core optional by setting a try statement in __init__.py and a "from damask import xxx"
2012-01-04 11:06:24 +00:00
35bd460e39
added "core" package capability to processing
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(renamed former f2py modules)
reverted pathinfo...
2011-12-22 10:36:59 +00:00
429af90ccb
added Id flag and content
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added "core" package capability
2011-12-22 10:30:25 +00:00
f463c2da70
added addCurl.py, not sure if it works correctly. still in old (eq. to addDivergence.py) style
2011-12-21 17:25:31 +00:00
06cb99d156
restructured location of FFTW libs
2011-12-21 13:09:55 +00:00
8be14ef72e
now aware of blank and comment lines in pathinfo
2011-12-20 10:55:47 +00:00
c5d64df287
example for new syntax and options.
2011-12-20 10:20:42 +00:00
2bfbb97c11
import of re module was missing
2011-12-18 15:49:44 +00:00
d96c64373c
added option to have blank pathInfo (to switch off ACML for example)
2011-12-15 22:21:44 +00:00
fbfb39de3f
removing 2 bugs from previous commit
2011-12-15 15:29:22 +00:00
a27a78bab1
changed per Philips suggestion
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config folder will later contain debug.py and numerics.py
2011-12-15 15:15:32 +00:00
0eb51046a4
worked on integrating using damask package in test
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renamed config to material/material.py to make it more consitent
2011-12-15 14:53:10 +00:00
2fcbc1ff13
started solver sub package
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improved guessing of DAMASK_ROOT
2011-12-15 08:51:16 +00:00
4faded6297
started DAMASK Python package...
2011-12-13 20:02:26 +00:00
031a00237f
improved makefile, no directly linking to files of acml
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corrected default pathinfo
improved test for intel compiler
2011-12-09 16:34:53 +00:00
7d1d2b6229
corrected small mistake in setup_code and makefile
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test no. 1500, spectral compile test with intel compiler is now working. adjusted run_test and tamask_test
2011-12-09 15:13:27 +00:00
2ceb78c337
introduced new damask_tools method "relPath" and adopted it in setup_processing.py and setup_code.py
2011-12-06 18:38:03 +00:00
b752becbea
added functions in DAMASK_TOOLS to get pathInfo, root and bin directory
2011-12-05 13:05:42 +00:00
81e9607316
tests which define variants in test_variants() generator can be handled
2011-11-23 18:32:22 +00:00
99b7dcf7b5
polishing and changed to comply with PEP 8 style guide
2011-11-23 15:42:18 +00:00
205bb49b34
now all methods use generic add_data
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added change_value method
2011-11-23 15:21:16 +00:00
21bcfc2986
added class ASCII_TABLE for easier processing of those...
2011-11-23 14:54:05 +00:00
e8f5996a96
renamed MSC_TOOLS.library_paths to libraryPath, since only single string is returned
2011-11-23 08:25:52 +00:00
5a1e73b53d
added set_timelimit functionality to fortran-wrapper of FFTW and introcudec it to DAMASK_spectral.f90
2011-11-21 18:48:38 +00:00
b67b5f9ef9
improvements!
2011-11-21 18:01:08 +00:00
ddc2b04661
material_config reads and writes files, adds or changes existing parts; still needs some polishing...
2011-11-21 16:40:23 +00:00
3c7ebc7a30
introduced material.config parsing and self representation, i.e. printing of class object.
2011-11-18 19:59:20 +00:00
cf8b60986e
response to Philip's comments. Interesting, chat via SVN :)
2011-11-17 21:19:08 +00:00
ac8b5f0708
added short comment for discussion...
2011-11-17 18:39:09 +00:00
ae73172ba7
python syntax
2011-11-17 16:17:56 +00:00
ddb68eee7c
new module damask_test, set compile=false as default in msc_tools, added first draft of material.config generator to damask_tools
2011-11-17 14:05:39 +00:00
795e3d070b
polishing on test 2000_hex_elastic
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postprocessing commands are refactored out into file postprocessing.cmd, one command per line
2011-11-10 10:42:59 +00:00
bfd6d4831f
tests 2000 and 2001 updated
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use damask_tools to check whether DAMASK_ROOT is set
2011-11-09 12:09:54 +00:00
de96e99bca
corrected determination of restartRead from commandline (now done by FEsolving instead of DAMASK_spectral_interface)
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recompiled fftw libraries with --enable-shared to make them work with f2py
added draft for compilation test of spectral solver
2011-11-07 18:25:10 +00:00
313cd2edb3
ACML path example now more realistic.
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corrected dangerous overwriting of LD_LIBRARY_PATH and PYTHONPATH.
2011-11-04 15:42:52 +00:00
4966231e5b
use return instead of two nested breaks that do not even work correctly like it is used here
2011-11-04 11:30:29 +00:00
7af1249298
made string comparison fool-proof with lower-casing.
2011-11-03 17:34:44 +00:00
cac203939b
$DAMASK_ROOT takes precedence if defined in environment.
2011-11-03 13:55:17 +00:00
9e3d7d7d6c
made $DAMASK_ROOT definition optional
2011-11-03 13:51:54 +00:00
b9647b2584
moved parts into new "lib" folder
2011-11-03 13:21:11 +00:00
4cac885bd0
added function to find out shared library path of most recent Mentat release
2011-11-03 12:59:51 +00:00
b5e6b754fb
starting "lib" subfolder for shared goodies.
2011-11-03 12:19:26 +00:00
Philip Eisenlohr