753d71965e
data structure file for HDF5
2016-10-07 15:31:29 -04:00
e148ecc3e3
quick hack to locate the HDF5 data structure def file
2016-10-07 10:46:07 -04:00
2cbec97eab
update xml definition of data structure in HDF5
2016-10-07 10:45:31 -04:00
7262ed9a17
use xml file showing the data structure in HDF5
2016-10-07 10:00:03 -04:00
aae2bcf6f9
add new interface class to HDF5
2016-10-07 09:47:15 -04:00
e20623845a
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-22 16:14:07 +02:00
6fade15323
no blank lines after docstring
2016-09-21 17:46:53 +02:00
9e3c54b0e3
a few comments and adjusted calculation
2016-09-21 17:06:50 +02:00
7291c20cd4
added reference
2016-09-21 17:06:50 +02:00
e5ba508080
added funtionality to run selected test only and functionality to show available tests
2016-09-20 07:10:07 +02:00
fbacdd8e6d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-09-11 19:17:35 +02:00
9d7cad1fa4
python3 compatible solutions that still work on python2
2016-09-11 19:03:32 +02:00
0b4e75c201
update function was not working due to name clash for self.update
2016-09-10 20:44:46 +02:00
590f42cdb6
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-09-09 22:35:44 +02:00
1e16ebe2ef
not used any more
2016-09-08 08:45:46 +02:00
4bbd69309d
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-05 01:29:09 +02:00
6f843ce85b
Merge remote-tracking branch 'refs/remotes/origin/development'
...
Conflicts:
lib/damask/test/test.py
2016-09-04 18:55:13 -04:00
cde7de4e9f
improved superclass handling and compare_Tables
2016-09-04 18:46:53 -04:00
221d3753f0
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-04 19:07:15 +02:00
6ea7eeee08
bugfix when restoring old behavior
2016-09-04 07:34:58 +02:00
d94db61534
update only supported by minority of the tests
2016-09-03 17:01:10 +02:00
c05307a273
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-09-03 14:35:53 +02:00
d41ac4e463
remove white space in docstring
2016-09-02 14:35:23 -04:00
4c6b8c490f
change one-line docstring to fit in one line.
2016-09-02 14:34:35 -04:00
b16046fd43
remove unused import for test.py
2016-09-02 14:31:00 -04:00
2b3faf204c
make table compare normalize data by type (scaler, vector, tensor)
2016-09-02 14:30:08 -04:00
32c4a20a46
clean up, added --debug to base class, renamed testPossible to feasible
2016-09-01 15:37:49 -04:00
f9c3d335fc
two new methods to convey deemphasis and deletion
2016-08-25 11:59:04 -04:00
c2b1499d84
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements
2016-08-16 12:46:03 +02:00
6bdce9b332
fixed error for completely empty label list in read_array
2016-08-11 14:22:07 -04:00
0219a5f0e3
regex match
2016-08-01 17:01:13 +02:00
0056f05b9d
all functions using angles now feature logical "degrees"
2016-07-31 19:33:26 -04:00
b02bbc77d8
correctly handling whitespace
2016-07-31 15:20:44 +02:00
bb5070b52f
util.report without mandatory arguments
...
reporting can now omit either "who" or "what". cleaner output in case of no "who"...
2016-07-18 10:20:39 -04:00
9441ee7326
removed obsolete root relation
2016-07-16 09:36:15 +02:00
7f67ff05fd
used in both functions
2016-07-15 16:53:57 +02:00
0b145826a6
unicode docstring does not work for abaqus, but if using ö pyflakes wants to have a unicode docstring
2016-07-15 16:51:49 +02:00
ade6db3f9c
uses version string from CONFIG file
2016-07-14 16:12:05 +02:00
787a8da1c3
removed remainders of Corientation compilation
2016-07-14 16:10:59 +02:00
9e3f4b1ec4
unicode string caused trouble with Abaqus' IronPython
2016-07-14 16:09:04 +02:00
3314e5f051
updated symlinking, removed unused "rootRelation"
2016-07-14 15:11:49 +02:00
83e1970f71
now working with tcsh
2016-07-14 12:24:55 +02:00
0fbb56a6ef
python env reads from $DAMASK_ROOT/CONFIG
2016-07-14 10:42:22 +02:00
be02300d38
print statement disturbs shell piping
2016-07-04 21:44:59 +02:00
4f683d1974
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-07-03 11:47:56 +02:00
759126b906
compatible to python3
2016-07-03 11:44:01 +02:00
af4307ea72
Merge branch 'NoCoreModule' into development
2016-07-01 15:08:47 +02:00
fa13aa30b0
python 3 at least imports the damask module now
2016-07-01 15:03:25 +02:00
259ee072a6
Merge branch 'development' into NoCoreModule
2016-06-27 15:35:46 +02:00
d669cfb024
removed obsolete importing of sys
2016-05-17 11:15:04 -04:00
0c1657693f
dirty (but working) fix to adopt table.labels now being table.tags: table.labels --> table.labels(raw = True)
2016-05-17 10:52:21 -04:00
9103ee544b
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-05-17 09:52:18 -04:00
8d6c601a45
fixed python flake complaints.
2016-05-16 20:17:17 -04:00
1c36380a8a
fixed typo...
2016-05-16 20:05:57 -04:00
dc6260be58
changed "labels" property to "tags". added method to inquire about (abstract) labels, i.e. interpreting the tag list to distill underlying label "meaning".
2016-05-16 19:54:00 -04:00
280076e7ef
removed (probably obsolete) warning about missing h5py module.
2016-05-11 10:04:01 -04:00
d3ee2c05b9
=removed remaining IDs
2016-05-11 11:43:21 +02:00
7f24fe15ed
removed svn ID from python files
2016-05-11 11:37:59 +02:00
a21e8cd863
usind explicitly python2 to run in environments with python 3 as default
2016-05-11 11:01:39 +02:00
5d4d78b079
expanded functionality to treat (white space-containing) strings and empty ("") data.
2016-04-28 23:11:06 -04:00
7ce208019c
Merge branch 'development' into miscImprovements
2016-04-25 12:36:02 +02:00
ea24becdd4
added "report_geom" shortcut to croak geometry info
2016-04-24 11:20:55 -05:00
45e237058b
fixed malfunctioning table.label_indexrange(listOfLabels). can now be used as numpy slice.
2016-04-24 10:07:37 -05:00
54dec3ea2a
remove CR and LF from labels and info lines. Can happen if multiline shell input is parsed...
2016-04-20 15:46:39 -04:00
72639d174b
fortran code was translated by philip
2016-04-15 00:25:12 +02:00
0632dc1308
pyflakes complained
2016-04-15 00:22:41 +02:00
573d10f1e1
Merge branch 'development' into NoCoreModule
2016-04-15 00:05:38 +02:00
82063494fd
adopted to new json format of paraview
...
introduced "standard" colormaps for stress, strain, and orientation
file is now implicit the first argument without key (in line with other scripts)
2016-04-11 19:47:07 +02:00
da29b1a361
removed line continuation characters (not needed within parentheses)
2016-04-05 13:29:36 -04:00
73640587d5
fixed buggy query-by-label-index
2016-03-27 16:26:51 -04:00
3824b683bc
removed extra cython file, symlink to standard orientation instead
2016-03-24 15:06:04 +01:00
c73382e51f
further cleaning
2016-03-24 14:36:24 +01:00
d765282165
save fortran code
2016-03-24 14:20:18 +01:00
143a868dad
files resulting from compilation should not be part of the repository
2016-03-23 11:05:00 +01:00
fafedd5cd6
Merge branch 'LargeFiles' into development
2016-03-22 15:45:42 +01:00
1b22b6e4ee
replaced variable interpolation into strings by "%" with .format() method
2016-03-21 10:26:30 -04:00
8cd1f027b3
bug fixing.
2016-03-21 08:51:56 -04:00
01a5343ca2
added another backgroundMessage animation. generally cleaned code a slight bit.
2016-03-20 20:58:10 -04:00
a41cd3df40
added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid.
2016-03-20 16:46:35 -04:00
d42f8d5fd4
added possibility to read real numbers as microstructure indices (not only integers)
2016-03-17 17:42:05 -04:00
7a4e9856c5
Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development
2016-03-14 18:47:54 +01:00
fdd4ab483e
core.so is not part of the repo
2016-03-14 05:51:52 +01:00
2dbdf9a72f
all symbols need to be representable in unicode
2016-03-13 18:21:25 +01:00
efde4d363d
changed encoding
2016-03-07 09:56:14 +01:00
a4bbdd5ecb
further commenting, removing not used variables and code (marc2vtk)
2016-03-04 19:06:36 +01:00
d1e8f69857
added docstrings etc
2016-03-04 17:55:11 +01:00
24391b5398
checked with prospector, adopted mainly docstrings
2016-03-04 17:53:55 +01:00
9a405ef41b
using more stable way of handling unicode printing, cleaning unicode delete from output of execute
2016-03-04 17:23:38 +01:00
75480bc677
modified background threading because using it in postResults led to an dead lock.
...
rest modifications are just style
2016-03-04 15:22:01 +01:00
4d8aad36f1
first round of libraries
2016-03-01 23:02:47 +01:00
2a3e42a906
prevent import errors (e.g. when using Abaqus, having it's own python without scipy)
2016-02-02 23:24:44 +01:00
4fa2a58a19
needed to adopt to new test env (not perfect yet, but keeps things going)
2016-01-29 19:21:04 +01:00
f2c7eea161
git compatible way of version handling for Fortran and Python
2016-01-27 16:48:27 +00:00
81a8b2c4ed
color lib for output
2016-01-05 18:17:55 +00:00
120b2b8bd2
added test for hybridIA
2015-12-22 22:17:15 +00:00
0cfe35dfe6
consistently removing leading and trailing whitespace
2015-12-22 15:59:01 +00:00
bbb00b30e8
using numpy random
2015-12-17 21:26:59 +00:00
37aa559bd4
fixed missing structure type in material.config, small changes in the other code
2015-12-15 14:30:17 +00:00
97b96f13b2
updated installation for testing
2015-12-14 21:31:47 +00:00
1f08d0fbf6
verbose option for compareTables, new option to filter (now before and after normalizing)
2015-12-11 17:23:36 +00:00
c3dc05c53a
continued work on test class and adopted some tests
2015-12-04 22:40:39 +00:00
a18a1066e2
started to rework test class. Martin probably needs to check and continue improving on this.
2015-12-03 21:52:03 +00:00
fc2d79e17b
added more animations…
2015-12-02 23:08:18 +00:00
0e76ef85c1
checking return code in util.exececute, cleaning makefile, deleted dummy docs
2015-12-02 13:21:17 +00:00
0ffcb7fdaf
cleaning
2015-12-01 16:37:20 +00:00
161e637ba6
not needed any more (at more usefull position in damask.util)
2015-11-30 16:30:35 +00:00
38c536b6b7
improved unicode handling.
...
background message is now stoppable.
background message not “jumping” (multiplying) anymore.
2015-11-20 16:15:34 +00:00
30a481f152
fixed forgotten symmetry property for average orientation.
2015-11-14 04:36:46 +00:00
2b5cb08c4d
new method “head_putGeom” translates info-array into geom-description
2015-11-14 01:48:16 +00:00
6211a9faad
symQuats-related functions can take optional argument to downselect return values.
...
“getAverageOrientations” —> “average” and takes optional multiplicities of orientations in list.
2015-11-14 01:46:44 +00:00
b700721905
comment on literature
2015-11-08 11:44:46 +00:00
519484233c
can now deal with “empty” header line.
...
example:
# some comment
# further stuff
1_dim 2_dim
34 33
1 22
would work with “labeled”=True and stores the first two lines as “info”.
2015-11-03 21:14:45 +00:00
4ac9ef602e
still trying to find a stable solution on all machines
2015-10-29 21:51:57 +00:00
9ea0898cd9
corrected the convention added yesterday; “proper” and ‘improper” was the wrong way around. “proper = True ” considers the bigger (2 adjacent) SST. In general, an improper rotation is implicitly assumed when projecting a pole into the (single) SST, hence this is termed “improper” now.
2015-10-23 20:16:01 +00:00
15963391aa
inSST and inversePole now can consider the secondary SST related to improper rotations. Secondary SST is immediately neighboring (positively rotated around Z).
2015-10-22 21:15:15 +00:00
31579b3f88
tolerances caused problems, introduced new funtionality based on np.allclose
2015-10-22 05:59:11 +00:00
b676ed0085
support for Marc 2010 was dropped a long time ago
2015-10-20 13:32:48 +00:00
a087eedd54
added support for Marc2014.2 (so far installed on maws14 only)
2015-10-20 13:25:59 +00:00
e72ae63873
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
2015-10-14 21:35:56 +00:00
7df8d95cd0
slightly cleaner way of dealing with disorientation calculation when axis not required to fall into SST.
2015-10-09 13:03:10 +00:00
26f8f74310
undone np.unique of columns since this would introduce the unwanted side-effect of (messily) sorting columns. user expects to get sorting as provided through command line.
2015-10-09 12:55:30 +00:00
4c46d155ec
line continuation not needed
2015-10-09 10:24:17 +00:00
61090c955d
removed code doubling
2015-10-09 05:51:58 +00:00
851d2e1b2c
prevent to load columns more than once\n @Philip: OK?
2015-10-08 17:47:00 +00:00
3b0dc374bb
now using ‘emph’ in reporting function instead of code doubling.
2015-10-07 01:07:56 +00:00
801d57af4c
fixed buggy behavior caused by assigning string instead of single-item list to readBuffer.
2015-10-07 01:03:26 +00:00
6e05082133
might be needed in multicore env
2015-10-06 18:01:31 +00:00
95a8b54996
buggy behavior when read buffer contained string (len > 0, but no pop() method)
...
@Philip: please check if intended behavior
2015-10-06 16:19:37 +00:00
e089e60202
transparently deal with one-dimensional array output
2015-09-30 18:44:54 +00:00
b2243ae3c1
small polishing
2015-09-29 22:25:57 +00:00
948aa0c544
was missing in last commit
2015-09-24 10:01:15 +00:00
2aa1073949
relocated “croak” and “report” functionality to here. needs to be altered in all scripts that still use the ASCIItable class for those…
2015-09-22 21:00:18 +00:00
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
24bd3a6eee
added “non-strict” version to find disorientation, neglecting the search for axis falling into SST (has linear instead of quadratic effort).
2015-09-16 17:07:02 +00:00
8a05584924
bg.message does not require symbol selection anymore—will pick random if nothing specified…
2015-09-15 19:02:00 +00:00
5f9fae1b75
simplified reporting using "emph"
2015-09-11 12:55:43 +00:00
31bb27268c
removed dangerous property overload (.asQuaternion() —> .quaternion)
2015-09-09 22:37:18 +00:00
7495b33b68
label_dimension dropped indices >9 due to buggy string comparison…
2015-09-08 23:12:45 +00:00
ba418a5c97
reflect recent changes in orientation class
2015-09-03 16:50:49 +00:00
eb5ad7528f
fixed bug in asEulers() output in degrees
2015-08-29 23:22:32 +00:00
6848d83d13
behavior of IO_stringPos was unsafe in some situations, also took the chance to rename the variables used in its context to a more meaningful name.
...
functions in the core module are not used, including kdTree
2015-08-28 07:38:48 +00:00
f4145dd505
add numpy header location in the setup script.
2015-08-25 18:06:36 +00:00
636eb8a087
multiple fixes and improvements.
...
1) asAngleAxis got “degrees” switch, fixed buggy output for negative angles, now angles are always non-negative.
2) removed rotateBys.
3) asEulers corrected for cases w==z or x==y.
4) added method symmetryQuats.
5) calculation of disorientation (finally) fixed, returns tuple (disorientation quaternion, index symA, index symB, boolean whether A—>B or B—>A).
2015-08-24 13:39:09 +00:00
858fe7e897
prevent closing sys.stdin or sys.stdout
2015-08-24 00:40:52 +00:00
7ceb7f7614
fixed problem when reading single label through data_readArray
2015-08-23 23:18:34 +00:00
681b7f0831
added ‘emph’ method.
...
additional background message animations.
2015-08-22 17:02:49 +00:00
6ba76c3832
introduced public line object holding currently read data line as string.
...
label_append now has option to overwrite (reset=True) labels that were read originally.
data_writeArray maintains full significant digit representation as default.
2015-08-20 19:38:06 +00:00
22c52fbd32
cleaned core module
2015-08-12 18:48:09 +00:00
93dd9f5c09
bug fix regarding self.tmpext.
...
added check for access rights when overwriting original file.
2015-08-12 18:41:44 +00:00
a29240242b
standard name for numpy is np
2015-08-12 18:32:28 +00:00
chen