Philip Eisenlohr
a41cd3df40
added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid.
2016-03-20 16:46:35 -04:00
Philip Eisenlohr
6865987ea7
restored option to output microstructure indices as one-dimensional list (not clear why that got lost!)
2016-03-20 15:01:47 -04:00
Aritra Chakraborty
0f78f1c747
possibility to treat floating point numbers as microstructure indices
2016-03-17 18:09:22 -04:00
Philip Eisenlohr
4dfd59a9e2
output complete microstructure and texture info instead of limiting to grainIDs used in geometry
2016-03-07 22:15:40 -05:00
Martin Diehl
f13ba71f6e
fixed typo
2016-03-04 17:24:13 +01:00
Martin Diehl
48233d2767
missing variable
2016-03-03 14:58:04 +01:00
Martin Diehl
3ff3bb1a5b
pre processing finished
2016-03-03 14:44:51 +01:00
Martin Diehl
f7fedc4744
next bunch of accepted scripts
2016-03-02 13:50:57 +01:00
Martin Diehl
3ed3073eff
more...
2016-03-02 11:29:07 +01:00
Martin Diehl
c1dd5febd5
some more scripts passed
2016-03-01 22:27:21 +01:00
Martin Diehl
974b8cde41
some more syntax improvements
2016-03-01 22:13:57 +01:00
Martin Diehl
7c9d344601
python files now report their version depending on VERSION file in $DAMASK_ROOT
2016-01-27 17:06:00 +00:00
Martin Diehl
f693ead989
adding material.config to header
2015-12-28 16:36:26 +00:00
Philip Eisenlohr
6de6b8b87f
fixed wrong variable name when using pre-existing microstructures from table.
...
added switch to skip effort for tolerance == 0.
2015-12-09 14:13:19 +00:00
Philip Eisenlohr
08014a7030
small polishing
2015-12-04 01:16:49 +00:00
Philip Eisenlohr
3fb1f02382
forgot $Id$ and line endings…
2015-12-03 22:33:38 +00:00
Philip Eisenlohr
2efc602854
Smooth geometry by selecting most frequent microstructure index within given stencil at each location.
2015-12-03 22:32:28 +00:00
Philip Eisenlohr
8f5c3b9ad7
small polishing.
2015-12-02 23:13:10 +00:00
Martin Diehl
6ecbd3ae56
makefile had problems with static flag, mentat spectral Box was still using table.croak
2015-12-02 20:02:19 +00:00
Martin Diehl
f61f87e6d0
updated reference results (visual impression much better now) for geom_fromTable and silenced verbose debug output per default since it's causing problems when piping to file
2015-11-30 16:22:59 +00:00
Philip Eisenlohr
cee9a345b7
added option to label microstructure.
...
updated to most recent asciitable/damask.util infrastructure.
2015-11-20 16:30:55 +00:00
Philip Eisenlohr
0db4a7fad0
added debug messages.
...
added background message for estimated time (+ grain info).
fixed functionality—finally works as intended (lump orientations within threshold).
2015-11-20 16:27:57 +00:00
Martin Diehl
24382ed827
unified options to enable automated parsing for documentation
2015-11-16 10:52:56 +00:00
Martin Diehl
1336c8d0e6
now using default 2D output for geometry
2015-11-16 09:54:39 +00:00
Martin Diehl
302178ebb4
some trouble since clean was already in PETSc rules
2015-11-14 09:47:18 +00:00
Martin Diehl
4b85941a94
some comments
2015-11-11 19:51:34 +00:00
Martin Diehl
4ca566efa8
geom_rotate: rotates a geometry
2015-11-11 19:51:17 +00:00
Philip Eisenlohr
434bf2413e
simplified if—else with a = b if c else d
2015-11-10 01:35:26 +00:00
Martin Diehl
072be9c1bb
help now working if no mentat release present.
...
improved style
2015-10-26 19:34:44 +00:00
Martin Diehl
41f1994569
new style and test for grain growth
2015-10-26 17:59:36 +00:00
Martin Diehl
ebf20f2ebc
unified style and other minor improvements
2015-10-15 19:51:27 +00:00
Martin Diehl
e72ae63873
geom canvas crashed for some parameters, now giving error message. table class now handles dismiss correctly
2015-10-14 21:35:56 +00:00
Martin Diehl
8fac635c15
made hybridIA stuff working again
2015-10-13 17:02:07 +00:00
Martin Diehl
f1482a2af4
fixed buggy behavior in case of non unit-sized geometry
2015-10-12 18:10:26 +00:00
Martin Diehl
8fe443d068
clearer naming
2015-10-09 06:26:18 +00:00
Martin Diehl
61090c955d
removed code doubling
2015-10-09 05:51:58 +00:00
Martin Diehl
6d74cbf374
simpliefied scripts for vtk generation and introduce simple test to check if they run
2015-10-08 21:30:33 +00:00
Martin Diehl
fd04e0763b
legacy code geom... can be achieved by combining voronoi tesselation and geom_rescale, for ipfs can be plotted from ascii table with matlab
2015-10-08 17:41:35 +00:00
Martin Diehl
127c03c525
unneeded module
2015-10-06 19:29:32 +00:00
Martin Diehl
f014cef043
improved performance for non-weighted Voronoi Tessellation
2015-10-06 18:03:06 +00:00
Philip Eisenlohr
2c6a6f6530
fixed bug.
...
introduced possibility for poke bounding box in all dimensions.
2015-10-02 00:21:23 +00:00
Philip Eisenlohr
a2a7664e8e
default to 0–1 for z range
2015-09-29 22:35:57 +00:00
Philip Eisenlohr
21bcafe3e4
seeds coordinates now rescaled to proper box size.
2015-09-29 22:27:46 +00:00
Martin Diehl
4ead24a134
more tests
2015-09-24 16:52:58 +00:00
Martin Diehl
f4c53e0be8
removed warnings by pyflakes, implemented new croak functionality
2015-09-24 15:34:27 +00:00
Martin Diehl
e1157126bc
cleaned with pyflakes, added test for seed generation
2015-09-24 13:21:44 +00:00
Chen Zhang
3fa0312087
update usage of asciitable to new interface
2015-09-23 19:20:18 +00:00
Martin Diehl
42ac7902f7
indents wrong in fortran, seeds_fromDistribution bugfix and using ASCII table facilities
2015-09-20 21:03:10 +00:00
Martin Diehl
666b438e6a
using ASCII table
2015-09-18 16:12:27 +00:00
Martin Diehl
6a3a0f3859
allow asciitable to use file handle instead of string (following e.g. numpy.genfromtxt)
2015-09-16 19:44:11 +00:00
Martin Diehl
0c7f4e690a
fixed reference, still not 100% sure if everything is correct, but apparently the test never run
2015-09-12 16:30:28 +00:00
Martin Diehl
c53bf02fea
changed back to old behavior
2015-09-11 15:38:03 +00:00
Philip Eisenlohr
c69e7ec149
switched conjugation to apply to symmetric equivalents instead of incoming quaternion.
...
passing-down of degree option handled directly.
2015-09-09 22:43:56 +00:00
Martin Diehl
1c164574ac
more fixes following new possibilities of ascii table
2015-09-08 19:42:14 +00:00
Martin Diehl
4e9b27b0ce
failure in last commit, using standard keyword eulerangles instead of eulers
2015-09-08 18:48:58 +00:00
Martin Diehl
dad0fdfb85
still needed
2015-09-05 14:59:52 +00:00
Martin Diehl
45a3568b40
bugfix for last commit
2015-09-05 14:46:57 +00:00
Chen Zhang
b4768013a0
fix output error in output geom file.
2015-08-26 16:39:33 +00:00
Philip Eisenlohr
00b8660203
redundant.
...
functionality available in “geom_fromTable”…
2015-08-20 19:46:11 +00:00
Philip Eisenlohr
c85306257d
redundant.
...
improved functionality now via “ang_toTable” and “geom_fromTable”…
2015-08-20 19:44:17 +00:00
Philip Eisenlohr
63d5506388
adopting further simplifications provided through ASCIItable class.
2015-08-20 19:42:05 +00:00
Philip Eisenlohr
05a8124d82
simplified rescaling interpretation
2015-08-19 18:30:50 +00:00
Martin Diehl
324c5b36d3
restructured to get help even without mentat release
2015-08-18 16:39:47 +00:00
Tias Maiti
befd6aa7ff
fixed stderr output (croaking..) as per new ASCII table style
2015-08-18 04:33:45 +00:00
Tias Maiti
419a612d0e
updated to new ASCII table style
2015-08-18 04:32:19 +00:00
Philip Eisenlohr
1976cf44c1
fixed os.path.splitext bug when using STDIN input
2015-08-12 21:56:37 +00:00
Philip Eisenlohr
dfbd2fd013
fixed bug for STDIN processing
2015-08-12 21:28:07 +00:00
Philip Eisenlohr
9ee49b2c3b
adopted recent changes to API in ASCIItable.
...
removed Voronoi method from core module.
fixed buggy Laguerre tessellation (wrong seed scaling, wrong x,y,z order)
2015-08-12 20:55:53 +00:00
Philip Eisenlohr
8217fdb115
adopted recent changes to API in ASCIItable.
2015-08-12 18:56:40 +00:00
Martin Diehl
31a6ac328d
adjusted to new ASCII table style and bugfix
2015-08-12 18:53:39 +00:00
Philip Eisenlohr
cd70ec5a38
adopted recent changes to API in ASCIItable.
2015-08-12 18:43:11 +00:00
Philip Eisenlohr
cd9a802a2b
adoption of recent API change in ASCIItable.
2015-08-12 18:09:40 +00:00
Philip Eisenlohr
5dad5df588
adoption of recent API change in ASCIItable.
2015-08-12 17:47:38 +00:00
Philip Eisenlohr
3097c87bea
adoption of recent API change in ASCIItable.
2015-08-12 17:43:49 +00:00
Philip Eisenlohr
57dfa6a87e
added fall-back to non-multithreading execution when using only single CPU.
2015-08-08 21:43:21 +00:00
Philip Eisenlohr
31f6d22d89
added option (force) to override selective seeding check.
2015-08-08 20:20:53 +00:00
Philip Eisenlohr
889a5807bb
more conservative (and probably appropriate) variance default for Laguerre tessellations: 1.0 —> 0.1
2015-08-08 20:12:26 +00:00
Philip Eisenlohr
bbeb210708
functionality now provided by more general “geom_fromImage”
2015-08-07 22:16:40 +00:00
Philip Eisenlohr
9729c03c00
removed obsolete code. added croak about number of cpus used.
2015-08-07 22:15:24 +00:00
Tias Maiti
4ed56a8ba6
removed debugging print statements
2015-08-07 20:52:57 +00:00
Philip Eisenlohr
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
...
changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
Tias Maiti
de90a04374
assign indices from microstructure column if present for laguerre tessellation
2015-07-30 04:42:00 +00:00
Tias Maiti
599bb768ef
index microstructure from 1 instead of zero for laguerre tessellation
2015-07-28 22:15:32 +00:00
Haiming Zhang
b69a422529
Generate the geometry description of a directional non-equiaxed grain structure, e.g., RVE cutted from a cold-rolling sheet. '--reduct' specifies the thickness reduction after rolling, and '-n' specified the number of samples cutted, e.g., n=5, then five samples will be cutted from the sheet along theta = 0 (the rolling direction), theta = 22.5, theta = 45, theta = 67.5, and theta = 90 (the transversal direction).
2015-07-24 14:12:10 +00:00
Philip Eisenlohr
fc0e29c45b
removed erroneous rescaling of Laguerre weights.
2015-07-22 22:34:40 +00:00
Haiming Zhang
b15f68905f
fig a bug.
2015-07-21 15:38:12 +00:00
Haiming Zhang
331a4c5775
add the number of the re-constructed orientation into the name of output files.
2015-07-18 17:25:05 +00:00
Philip Eisenlohr
d676fdc1ce
fixed default behavior of symmetry. used to advertise having cubic symmetry but was using [].
2015-07-10 16:58:30 +00:00
Philip Eisenlohr
fcdd80bba3
switched order of command line options to make consequence of “degrees” switch more clear, i.e., it affects both the tolerance and Euler angles…
2015-06-29 09:40:44 +00:00
Philip Eisenlohr
129026662c
fixed small bugs.
...
modernized file treatment.
improved Laguerre speed by a factor of 2 due to precalculating the squared weights.
2015-06-27 08:41:08 +00:00
Philip Eisenlohr
e310763c52
Novel script to generate geometry description and material configuration from position, phase, and orientation data in an ASCIItable.
...
Can deal with phase-specific lattice symmetry, condenses orientations within a given angular threshold, and might be used in lieu of geom_fromANG when replacing the ANG header.
2015-06-21 11:56:05 +00:00
Tias Maiti
acad1246f3
fixed wrong variable name for quaternions as rotation options
2015-06-19 04:38:00 +00:00
Philip Eisenlohr
d57c7568dd
simplified processing of ASCIItables by utilizing the improved class methods.
...
modernized file looping.
updated help.
2015-06-16 05:42:11 +00:00
Luv Sharma
a5b3e9d64c
typos fixed
2015-06-14 05:51:53 +00:00
Haiming Zhang
c7f59c6482
change angle into radian.
2015-06-11 17:57:23 +00:00
Haiming Zhang
bfe76794af
add the output of ".ang" file
2015-06-11 16:50:29 +00:00
Yannick Naunheim
c45a0ce55e
improved stability for geom_fromAng. no longer depends on correct header information.
...
geom_fromVPSC with correct size determination now
2015-06-11 10:06:53 +00:00
Philip Eisenlohr
b7f98c00d6
input file handling now save for large file count.
...
streamlining of input column detection.
fixed bug iterating through “grainIDs” instead of “grain”.
proper closing and dismissal of output table file.
2015-06-05 11:50:15 +00:00
Philip Eisenlohr
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
Philip Eisenlohr
f50927b99f
Create seeds file by poking at 45 degree through given geom file.
...
Mimics APS Beamline 34-ID-E DAXM poking.
2015-06-05 11:41:44 +00:00