d426be49d0
fixed linker error for some ifort/f2py combinations
2014-05-21 10:07:10 +00:00
89c896678b
added printing of cli arguments to seeds_fromRandom, fixed regression in compile_CoreModule and DAMASK_spectral_doxygen
2014-05-15 09:58:31 +00:00
142a72335e
small changes on the deploy me / documentation scripts
2014-05-14 10:07:10 +00:00
6df66c6349
updated Marc run_damask scripts, linking against BLAS is done by Marc anyway, removed. renamed extension of original files from org to more explicit original
2014-05-07 14:29:53 +00:00
5dedad1392
fixed typo in last commit
2014-04-30 05:05:41 +00:00
6bce04df48
changed linker command slightly to ensure dynamic linking and link now agains non-parallel (but threadsafe) versions of LAPACK
...
(compile_CoreModule.py, Makefile, abaqus_v6.env, mod_MarcMentat)
openmp is not working for Abaqus exp, probably because the ifort 14 is not supported.
Test is now using a version without openmp
2014-04-29 16:43:59 +00:00
2346a0841e
improved symbolic linking and replace deprecated print syntax
2014-04-29 14:43:04 +00:00
3f5d92b9a4
polishing and shortening
2014-04-10 19:25:23 +00:00
6550729b49
now symlinking only to know extensions (cause trouble for temp files like *.py~ and the like)
2014-04-09 10:40:10 +00:00
342ca0be47
tested new scripts to update shebang, all files got same shebang (and for python files encoding)
2014-04-01 18:41:14 +00:00
188002f16e
more LF, Id, and executable status changes
2014-04-01 16:58:54 +00:00
5c3e2f49d7
simplified symlinking, using python list dir method, no need to update this script anymore
2014-03-26 13:11:12 +00:00
943349fdbb
bunch of new scripts:
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gwyddion_filter tries to smoothen out Gwyddion data sets.
vtk_fromGwyddion produces vtk mesh from Gwyddion data set.
geom_addPrimitive allows to add box, cylinder, or ellipsoidal blobs to geom file.
2014-03-04 03:34:34 +00:00
f146359c04
added --prefix option to configure script to specify symlink location
2014-02-28 07:47:11 +00:00
7245e38327
like for IMKL, we probably should link ACML also against the omp version
2014-02-14 20:14:44 +00:00
8ec38e8476
corrected linker options for blas
2014-02-14 15:59:25 +00:00
368de2f565
small fix on installation with imkl, need to try it out
2014-02-11 17:05:20 +00:00
25ee49ea78
fixed Abaqus test to run with new installation scheme
2014-02-05 06:38:31 +00:00
986591682c
remove equals sign in rpath definition to work with mac, changed linker options in compile_CoreModule to work with linux again, please let me know if mac doesn't work anymore (it should)
2014-01-30 13:07:44 +00:00
eeca9ed349
solved error: Undefined symbols for architecture x86_64: "_PyArg_ParseTupleAndKeywords" by adding arguments to LDFLAGS
2014-01-29 20:06:57 +00:00
34663daa99
rpath=argument syntax unfortunately not working on OS X, hence changed back to rpath,argument
2014-01-29 19:52:31 +00:00
f82e5ec26e
some small changes on the installation scripts, IMKL now works with gfortran, more verbosity and more sanity checks
2014-01-29 12:20:56 +00:00
ee99216edc
polishing compile_CoreModule, bug fix for Makefile
2014-01-28 07:34:13 +00:00
4648da1f32
small changes, tests still not running
2014-01-27 22:06:39 +00:00
b11c64d310
polishing
2014-01-27 16:24:07 +00:00
861dc76700
fixed test for compilation of core module
2014-01-27 16:07:52 +00:00
36812cd6ea
fixed some testing scripts to run with the new installation
2014-01-27 15:09:38 +00:00
02441bef0f
introduced rpath to tell executable where libraries are located
2014-01-27 14:10:49 +00:00
656e3cc6ca
some more small changes, including bug fix in configure + relative linking in Makefile for spectral solver
2014-01-27 10:12:29 +00:00
081d4da768
fixed path
2014-01-24 13:47:46 +00:00
554a6ab738
fixed typos and missing include
2014-01-24 13:17:54 +00:00
a6dac1eceb
fixed lib to use new config file
2014-01-24 13:15:01 +00:00
d66b41c686
fixed installation, will test now
2014-01-24 12:30:27 +00:00
c9c6588f7c
renamed seeds file related scripts in a (hopefully) consistent manner
2014-01-23 20:48:33 +00:00
3e697e006a
added (again) Intel OpenMP library to linker flag list (-liomp5). Why was that dropped..?
2014-01-22 23:57:08 +00:00
380f6e1ec5
fixed syntax bugs
2014-01-22 16:03:27 +00:00
e81b798662
corrected shell extension for apply_DAMASK_modifications.sh (was py)
2014-01-18 18:00:28 +00:00
fc7fd80e9c
following convention of ".py" extension for Python scripts (now also compatible with new Makefile)
2014-01-16 21:53:14 +00:00
278f854e41
introduced functionality to get output results by point from the HDF5 file
2014-01-15 22:17:32 +00:00
cf318f4392
fixed bug in lapack
2014-01-14 22:50:57 +00:00
449c66c70f
did some testing...
2014-01-14 19:32:55 +00:00
01c8c434f7
finished work on the new installation scheme (if no bugs are found ;))
2014-01-14 19:03:41 +00:00
3d69d9b927
moved DAMASK_NUM_THREADS to options, DAMASK_env.sh gets it from there
2014-01-13 10:56:54 +00:00
aab0208c65
more modifications, only configure needs modifications
2014-01-12 17:29:00 +00:00
80da1c529e
some more work on the consistent installation scheme, fixed bug in Makefile
2014-01-11 19:13:02 +00:00
4271f65d05
textfile containing options (like pathinfo, but extended and will be directly used by the Makefile)
2014-01-11 17:16:51 +00:00
2262098ed4
more work on new installation
2014-01-11 14:28:07 +00:00
e025ac5952
fixed DAMASK_env.sh to work with linux and Mac, started to reorganize installation to be consistent for all solvers
2014-01-11 12:46:30 +00:00
9a2ad45f7a
probably(?) fixed bug with Windows: comparison string should be 'Windows' not 'Windos' , I suppose
2014-01-02 15:08:09 +00:00
65de581f72
new script setup_env.py to modify DAMASK_env files, will replace setup_shellrc.py
2013-12-21 11:57:02 +00:00
543639bb8f
added support for Marc/Mentat2013.1
2013-12-19 13:37:35 +00:00
bb0b35e466
made compilation_info.f90 windows compatible and added abaqus_v6_windows.env as a template for using DAMASK with windows.
...
Deleted old fftw and ACML installation instruction (can be found on damask.mpie.de)
2013-10-10 09:38:31 +00:00
1593daea97
exchanged order of asking for BLASDIR and BLASTYPE. now type comes first (otherwise you may not know your options...)
2013-09-23 19:27:34 +00:00
5bb9c95245
removed compiler option '-diag-enable sc3' from openMP compiler calls as it does not work together
2013-08-08 14:47:04 +00:00
7415c934c5
fixed too long lines in Fortran commands with openMP
2013-08-08 07:53:51 +00:00
1c933bd39a
added possibility to create damsk symlinks in /usr/local/bin, that's where also marc mentat links are placed by default
2013-08-02 13:55:06 +00:00
f896b4a01e
updated Marc/Mentat integration once more to minimze interference with original instal
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added support for Marc2013, which is now default in apply_DAMASK_modifications
2013-07-24 08:41:58 +00:00
a7b6093edc
fixed bug in include_linux64 for Marc 2012, tests should run again after updating the copy in /msc/....
...
polished two other versions of this file
unified output format for /echo/ in material.f90
2013-06-11 07:28:08 +00:00
6b7a69fea6
Layout compromise between classic and new Mentat
2013-04-29 14:27:25 +00:00
29a6d4f901
new Mentat integration; thre is a DAMASK menu now in jobs/run
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our installations will be updated one by one, so watch out for the new menu!
2013-04-26 13:43:10 +00:00
8da7544978
marc doesn't need error prone setup_code any more, moved Marc includes from code/include to lib/includeMarc
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DAMASK_marcXXXX.f90 now is not a copy any more but contains one definition and an include statement
setup_code of spectral solver is now replaced by the standard 1) configure 2) make 3) make install
2013-04-22 14:41:33 +00:00
2a6f66d504
Abaqus explicit now with correct interface, seems to work now
2013-03-21 17:24:58 +00:00
48e57fc3cb
removed -save option from all compiler calls using openMP
2013-03-06 07:45:45 +00:00
80a20d5ea9
continuation of last commit
2013-02-01 13:22:40 +00:00
3ffd6499b1
change bash-only "let" to "`expr`", abaqus_v6.env now suppresses warnings about long lines (there are only comments anyway)
2013-01-28 15:30:51 +00:00
41c5e43377
reduced optimization level to 01 as O2 gives the following runtime error:
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/abaqus/6.12-2/code/bin/standard.exe: symbol lookup error: /tmp/f.roters_input_hbc_29668/libstandardU.so: undefined symbol: for_simd_random_number
2012-12-21 15:09:34 +00:00
93a5a0be50
updated Marc/Mentat scripts
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submit1 now usese O1 optimization
submit2 now usese O2 optimization
submit3 now usese O1 optimization plus openMP
added posibility to choose preferred editor in apply_DAMASK_modifications
2012-11-13 15:27:06 +00:00
339205c890
added missing quotes
2012-10-25 07:56:58 +00:00
0e33725395
switched to general logic that branches locally depending on shell type.
...
now bash and csh derivatives should work.
2012-10-18 09:55:54 +00:00
71e1d4d5bb
substituted old patched FFTW with new, now unpatched, version
2012-10-05 17:27:40 +00:00
48a9104b7e
corrected fortran compile command and added comments on the compiler switches
2012-10-05 17:22:45 +00:00
73349d02f5
merged precision info into the file prec.f90 and removed prec_single.f90
...
precision information is now parsed as a makro, defined by the compiler, eg. -DFLOAT=8 for 8 byte long floats or -- in case no values is given -- for the FEM wrapper by the interface files.
Please don't forget to run setup_code.py !!!!!!!!!!!
abaqus_v6.env is adjusted to specify the standard precision (float=8, int=4) and got some extra compilation options, some deprecated warning supressors are removed
Optional Marc modification will follow that allow automatic selection of suitable precision
2012-08-28 16:08:17 +00:00
beda30302a
setup_shellrc.py now creates .bashrc if no file for login startup information is found
2012-06-22 14:18:42 +00:00
5923d6b413
changed default Marc version to 2012
2012-06-20 06:40:34 +00:00
15c8a6b0ac
FFTW is no longer needed for the FEM subroutine
2012-06-19 08:05:47 +00:00
976564b74e
modifications for Marc/Mentat2012
2012-06-13 07:32:20 +00:00
1a96a9fbad
now based on abq6111
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now using ifort in $PATH
2012-05-16 06:57:37 +00:00
93f311f2b9
now skips environment variables in comments, i.e. after '#'
2012-01-31 15:43:39 +00:00
0b5a1a8925
removed some no longer used defaults
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added library path for fftw
2012-01-17 08:37:09 +00:00
37807ff6ca
added reporting of files altered by the script
2012-01-11 17:30:27 +00:00
7827364908
improved subtitution/deletion handling
2012-01-11 16:38:23 +00:00
c052e3d5d2
path to fftw3 lib is now set (hopefully, mandatory) with LD_LIBRARY_PATH (via setup_shellrc.py...)
2011-12-22 10:41:17 +00:00
8535421429
killed obsolete "--heap-arrays" comment
2011-12-22 10:21:50 +00:00
b12c6672d6
corrected LD_LIBRARY_PATH processing of LAPACK and added FFTW to it.
2011-12-21 13:13:11 +00:00
8bf3cc3a3f
exchanged fftw3.3 source with patched one (now containing set_timelimit wrapper in api/f77funcs.h)
2011-12-21 12:48:20 +00:00
0695bfd315
updated instructions
2011-12-21 09:35:47 +00:00
fcfc8d9402
corrected small syntax error
2011-12-20 13:58:30 +00:00
34d56548ad
corrected librarypath for fftw
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removed fftw3_threads
2011-12-20 13:52:19 +00:00
ee3049b761
corrected syntax errors
2011-12-20 12:53:19 +00:00
485ed3742c
now aware of empty lines
2011-12-20 11:04:29 +00:00
7dff3ba12c
reworked script...
2011-12-20 10:52:58 +00:00
2b42896ef6
added parsing of comments (# comment here...)
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added "lib64" as possible location (sub-directory) for liblapack.a
2011-12-20 10:19:48 +00:00
2b6cb3bd84
added linking option for FFTW.
...
which LAPACK installation is used can now be selected by switching on IKML, ACML, or LAPACK path (in that order of preference)
(multiuser environments now need to have system-wide installation locations for those libraries, since run_*_marc scripts are set once and for all to use them.)
2011-12-20 09:47:27 +00:00
c4a4c5cdca
corrected error in apply_DAMASK_modifications
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added support for Marc/Mentat2011 (classic)
2011-12-19 16:06:03 +00:00
031a00237f
improved makefile, no directly linking to files of acml
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corrected default pathinfo
improved test for intel compiler
2011-12-09 16:34:53 +00:00
1f1046ecc5
removed option -heap arrays from all compiler calls use 'ulimit -s unlimited' on the command line instead
2011-12-01 08:54:26 +00:00
4137d1f9af
fixed stupid lower case typo in pathInfo assignment
2011-11-29 17:40:11 +00:00
12bf99c2f9
removed option -extend_source from compile_fortran command definition as it also seems to influence allowed line length for free format files
2011-11-28 08:19:55 +00:00
db09a8b17a
removed ACML from public part and adjusted install instructions accordingly.
2011-11-14 15:21:12 +00:00
413805e589
now aware of ACMLpathinfo
2011-11-14 14:59:16 +00:00
Martin Diehl