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DAMASK_EICMD
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1301 Commits

Author SHA1 Message Date
Philip Eisenlohr d3a7ceff15 fixed serious bug regarding wrong reshaping order (was 'C' now 'F') of 3dim to 1dim and back. 2016-04-28 13:25:46 -04:00
Philip Eisenlohr 426658eb36 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-04-27 09:28:51 -04:00
Philip Eisenlohr b3e9877058 changed from "coords" to "pos" 
remind user about (creating a new) nodal output file
 2016-04-27 09:28:43 -04:00
Martin Diehl d497503411 renamed options.coords/options.coordinates consistently to options.pos 2016-04-26 22:49:58 +02:00
Philip Eisenlohr 0f0ca8cd71 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-04-25 10:24:30 -05:00
Philip Eisenlohr 36f41341ec Merge branch 'SimplifiedvtkRectilinear' into development 2016-04-25 10:23:50 -05:00
Philip Eisenlohr c67fbe7653 distinguished between singular and plural in remark 2016-04-25 10:23:08 -05:00
zhangc43 7ed4ce859a remove obsolete geom_frombarucentric script for microstructure reconstruction 2016-04-25 09:24:05 -04:00
Martin Diehl c30c7714ad hickup, probably from merge 2016-04-25 14:11:27 +02:00
Martin Diehl 26e5f97ff3 missing comma 2016-04-25 13:22:34 +02:00
Martin Diehl 2eb7ad7432 polishing 2016-04-25 12:59:15 +02:00
Martin Diehl 7ce208019c Merge branch 'development' into miscImprovements 2016-04-25 12:36:02 +02:00
Martin Diehl 469ec4b00e Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-04-25 12:33:06 +02:00
Martin Diehl d6002bdb10 removed remaining argument line 2016-04-25 09:08:24 +02:00
Martin Diehl e8afd57536 seems to work 2016-04-25 08:40:36 +02:00
Martin Diehl 26f437b507 fixed pointcloud issues for vtk < 7.0 (going back to old, non-XML format) 2016-04-25 08:28:00 +02:00
Martin Diehl 34aa11f197 finishing half-done renaming 2016-04-24 22:50:41 +02:00
Philip Eisenlohr db7c4bba45 same functionality can be accomplished with existing scripts. 
addEuclideanDistance + geom_fromTable
(reLabel) + specify grid and size
 2016-04-24 14:18:29 -05:00
Philip Eisenlohr 2daa162da2 renamed option "position" to "seedposition". now uses util.report_geom. 2016-04-24 14:12:10 -05:00
Philip Eisenlohr 4b7b473d2b superseded by more modern vtk_* machinery 2016-04-24 13:46:25 -05:00
Philip Eisenlohr 478acb96ce exchanged by more modern vtk_* machinery... 2016-04-24 13:38:36 -05:00
Philip Eisenlohr 88548cbb87 accidentally copied wrong writerType. now rectilinear... 2016-04-24 13:22:06 -05:00
Philip Eisenlohr 8c0b0351cd renamed "coordinates" option to "position". small additional polishing. 2016-04-24 13:12:18 -05:00
Philip Eisenlohr 10e31e489a new script to add arbitrary lines to ASCIItable header 2016-04-24 13:10:25 -05:00
Philip Eisenlohr b2b5f6b68c removed useless check for croaking 2016-04-24 13:00:57 -05:00
Philip Eisenlohr 219d489df4 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-04-24 12:35:17 -05:00
Philip Eisenlohr 94933514a1 removed "legacy" option. STDOUT reports most modern format available (ASCII XML for point cloud, VTK for rectilinear grid). 2016-04-24 12:34:01 -05:00
Martin Diehl bd23f979f4 also not needed anymore 2016-04-24 19:27:19 +02:00
Martin Diehl 33391fcf5b Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-04-24 18:58:32 +02:00
Martin Diehl ac9a9cb6ac scripts deemed useless 2016-04-24 18:56:13 +02:00
Philip Eisenlohr f1b5d40bac now uses util.report_geometry. some additional modernizing on the fly. 2016-04-24 11:24:00 -05:00
Philip Eisenlohr c37c0a8ed9 added awareness for Laguerre weights 2016-04-24 11:22:54 -05:00
Philip Eisenlohr f42c316aa2 updated help 2016-04-24 10:14:16 -05:00
Philip Eisenlohr 9e5a8d2391 modernized string formatting, updated help strings, using label_indexrange for data-slicing. 2016-04-24 10:09:28 -05:00
Philip Eisenlohr 648c2dd1d3 Only read position coordinates for grid detection. Needs data_rewind before writing of (condensed due to readArray) head. 2016-04-24 09:22:07 -05:00
Philip Eisenlohr 3b53d1bc82 polished option help messages 2016-04-22 14:20:36 -05:00
Philip Eisenlohr dffa119724 Added explicit option to force geom input format. 
Added option to output legacy format.
Possible bug in VTK presently prevents XML output to STDOUT... (Have filed issue to VTK developers.)
 2016-04-22 14:02:07 -05:00
Philip Eisenlohr 57acaba63e Missed out on putting the if..else statement as a bracketed group in a former commit. Next try of getting rid of {True: a,False: b}[choice] style... 2016-04-22 13:19:32 -05:00
Philip Eisenlohr 382727f2d6 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-04-22 13:13:42 -05:00
Philip Eisenlohr a1927f84c4 renamed "coordinates" option to "position". 
added explicit choice to write out as legacy format.
 2016-04-22 13:09:23 -05:00
Martin Diehl a3da663931 piping was broken 2016-04-22 17:59:50 +02:00
Martin Diehl c57c76085f missing labels 2016-04-21 15:41:35 +02:00
Martin Diehl 28423d4b45 increment information got lost 2016-04-21 11:31:02 +02:00
Martin Diehl 8ec9243016 new label name 2016-04-21 11:06:39 +02:00
Philip Eisenlohr 13e214fe18 added support for legacy VTK format 2016-04-18 15:08:29 -04:00
Philip Eisenlohr 0bc7f36ee5 added (transparent) capability to deal with geom files. 2016-04-18 14:49:11 -04:00
Philip Eisenlohr 24d029c7ed speed up (x 5 to 10) identification of most frequent microstructure index 2016-04-15 18:54:09 -04:00
Philip Eisenlohr 81f6530f52 changed default label of coordinates to "pos" 2016-04-15 18:27:23 -04:00
Philip Eisenlohr 7567aae7c0 now deals with 1D, 2D, 3D. speed up of grid detection. "pos" as default coordinate label. 2016-04-15 18:25:56 -04:00
Philip Eisenlohr 8ac40ced5a coordinates of nodal or cell-centered values are always labelled "pos" 2016-04-15 18:23:35 -04:00
Philip Eisenlohr cbe9afb2b3 removed --mode option. script figures on its own. 2016-04-15 14:06:01 -04:00
Philip Eisenlohr 3474800db1 switched coordinates default from "ipinitialcoords" (ugh) to "pos" 2016-04-15 14:04:10 -04:00
Philip Eisenlohr f040842ed4 superseded by addDisplacements 2016-04-15 07:41:55 -04:00
Philip Eisenlohr 01ba11448c small polishing of remark output regarding <3D vectors 2016-04-15 07:41:24 -04:00
Martin Diehl 91753d5322 more style related changes 2016-04-15 00:35:21 +02:00
Martin Diehl 5682d8f627 also not needed 2016-04-15 00:11:03 +02:00
Martin Diehl 6aa6b418ea not needed (Philip has different names) 2016-04-15 00:08:01 +02:00
Martin Diehl 573d10f1e1 Merge branch 'development' into NoCoreModule 2016-04-15 00:05:38 +02:00
Philip Eisenlohr dbfd107b48 Add deformed configuration of given initial coordinates. 
Operates on periodic three-dimensional x,y,z-ordered data sets.
Replaces 3Dvisualize..!
 2016-04-14 17:53:48 -04:00
Philip Eisenlohr 170d377092 much improved algorithm to speed up grain identification. 2016-04-13 19:36:24 -04:00
Philip Eisenlohr 1994b5a4c1 removed debug messages 2016-04-13 19:29:04 -04:00
Philip Eisenlohr ea0bc80af9 modernized to reflect rectilinearGrid processing. Now supports vector data and in-place adding. 2016-04-13 18:03:40 -04:00
Philip Eisenlohr 0b09ce31db changed coordinate option to be consistent with rectilinearGrid. 2016-04-13 17:49:48 -04:00
Philip Eisenlohr feae2164fc polishing and now explicitly closing input table. 2016-04-13 17:48:49 -04:00
Philip Eisenlohr 6e2ca7d595 Removed hard requirement of 3D dataset. Fills in necessary dimensions. 2016-04-13 17:48:17 -04:00
Martin Diehl 70afa462b2 should work now with odd resolution as well 2016-04-11 20:25:24 +02:00
Martin Diehl 18f18aa4b9 detabbing 2016-04-11 19:55:55 +02:00
Martin Diehl 82063494fd adopted to new json format of paraview 
introduced "standard" colormaps for stress, strain, and orientation
file is now implicit the first argument without key (in line with other scripts)
 2016-04-11 19:47:07 +02:00
Martin Diehl f483c6a404 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-04-11 16:06:00 +02:00
Martin Diehl d278d86f9d long line 2016-04-11 13:24:43 +02:00
Martin Diehl b1d714581c Merge branch 'development' of magit1.mpie.de:damask/DAMASK into miscImprovements 2016-04-10 15:40:52 +02:00
Philip Eisenlohr b0496f20ca grouped command line options. 
removed functionality to add random second phase.
 2016-04-08 17:47:02 -04:00
Philip Eisenlohr 2354cd609a small polishing of help. 
added option to change output number format.
 2016-04-08 17:46:06 -04:00
Philip Eisenlohr 3e6d2710a3 added option to report probability density 2016-04-05 16:18:34 -04:00
Philip Eisenlohr e9ec497da6 fixed bug preventing files specified with full path to be treated properly 2016-04-05 16:17:55 -04:00
Philip Eisenlohr fcddf9345e added option for non-uniform weights 2016-03-27 17:54:49 -04:00
Philip Eisenlohr 7c72ede29d now works properly for labels specified as index (instead of string) 2016-03-27 16:29:45 -04:00
Philip Eisenlohr 0d93a47c71 Generate histogram of N bins in given data range. 2016-03-27 13:34:19 -04:00
Martin Diehl 97314619cc corrections 2016-03-26 19:59:05 +01:00
Martin Diehl 7423c1a06a not needed anymore 2016-03-24 18:47:11 +01:00
Martin Diehl 04d2148e61 will replace geom_fromAng (in combination with geom_fromTable) 2016-03-24 17:55:15 +01:00
Martin Diehl ea28bc8f06 restored script for calculation of nodal positions 2016-03-24 16:19:49 +01:00
Martin Diehl 8b89063113 less core module 2016-03-24 14:19:00 +01:00
Martin Diehl 60a3ac5b04 copied fortran code 2016-03-24 12:35:33 +01:00
Martin Diehl 022b089fa7 cleaned core module related stuff 2016-03-24 11:49:23 +01:00
Martin Diehl 4592db8dfb added python based geometry reconstruction 2016-03-24 10:37:15 +01:00
Martin Diehl 809f03bef5 new printing for python3 and corrected help 2016-03-23 17:02:51 +01:00
Martin Diehl 466178cfc7 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-03-23 11:06:11 +01:00
Martin Diehl 900d2f7bf2 output follows damask.croak syntax 2016-03-23 11:05:36 +01:00
Philip Eisenlohr 0840a5f42e modernized orientation treatment and adopted slip systems from lattice.f90 2016-03-22 20:52:02 -04:00
Martin Diehl fafedd5cd6 Merge branch 'LargeFiles' into development 2016-03-22 15:45:42 +01:00
Philip Eisenlohr a41cd3df40 added "strict" option to reading microstructure from geom file. will now complain if data mismatches with grid. 2016-03-20 16:46:35 -04:00
Philip Eisenlohr 6865987ea7 restored option to output microstructure indices as one-dimensional list (not clear why that got lost!) 2016-03-20 15:01:47 -04:00
Philip Eisenlohr e39441f36b corrected usage message to tell about string comparison in filter condition 2016-03-17 19:02:30 -04:00
Aritra Chakraborty 0f78f1c747 possibility to treat floating point numbers as microstructure indices 2016-03-17 18:09:22 -04:00
Aritra Chakraborty 36c703ecd3 shortened excessively long lines 2016-03-16 15:20:31 -04:00
Aritra Chakraborty 3a267dc7ff FFT-based gradient calculation of scalar or vector field data (sibling of addCurl and addDivergence) 2016-03-16 15:02:38 -04:00
Aritra Chakraborty ce26ad06da polishing and introduction of locally derived grid in FFT subroutine 2016-03-16 15:01:22 -04:00
Philip Eisenlohr 6197e839c9 fixed missing file extension when adding in-place 2016-03-15 14:52:10 -04:00
Martin Diehl f857353e16 Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-03-11 12:49:47 +01:00
Martin Diehl b0dedb8cbd =addOrientation can do the same (and more) 2016-03-09 19:02:28 +01:00
Philip Eisenlohr e9338200eb Merge branch 'development' of magit1.mpie.de:damask/DAMASK into development 2016-03-09 12:28:52 -05:00
Philip Eisenlohr b933359f17 clarified text of error message complaining about wrong input dimension 2016-03-09 12:28:36 -05:00
Philip Eisenlohr 4dfd59a9e2 output complete microstructure and texture info instead of limiting to grainIDs used in geometry 2016-03-07 22:15:40 -05:00
Martin Diehl f13ba71f6e fixed typo 2016-03-04 17:24:13 +01:00
Martin Diehl 48233d2767 missing variable 2016-03-03 14:58:04 +01:00
Martin Diehl a51f2a29f6 cleaning 2016-03-03 14:53:55 +01:00
Martin Diehl 76a0a93c42 removed unneeded variables, fixed docstrings. missing variable jc in Barlat1989 from 46c33b0 2016-03-03 14:52:47 +01:00
Martin Diehl 3ff3bb1a5b pre processing finished 2016-03-03 14:44:51 +01:00
Martin Diehl 93d7643875 no long lines anymore and prospector is also happy 2016-03-03 14:44:29 +01:00
Martin Diehl 9fa49b8584 vtk files, mainly removed from vtk import * 2016-03-02 13:52:33 +01:00
Martin Diehl f7fedc4744 next bunch of accepted scripts 2016-03-02 13:50:57 +01:00
Martin Diehl 3ed3073eff more... 2016-03-02 11:29:07 +01:00
Martin Diehl e89923d6d3 next round 2016-03-02 11:11:20 +01:00
Martin Diehl 5d7e138a9b long line 2016-03-02 10:55:21 +01:00
Martin Diehl f77de7ac6e adjusting style (mainly long lines an "== None") 2016-03-02 10:52:24 +01:00
Martin Diehl c1dd5febd5 some more scripts passed 2016-03-01 22:27:21 +01:00
Martin Diehl 974b8cde41 some more syntax improvements 2016-03-01 22:13:57 +01:00
Martin Diehl 043f2faeb3 line too long 2016-03-01 21:59:59 +01:00
Martin Diehl 98476ea29c more improved scripts 2016-03-01 21:35:59 +01:00
Martin Diehl 9cfc27d295 line too long (132 lines max code, like Fortran, 159 including comments, Python standard) 2016-03-01 21:18:32 +01:00
Martin Diehl 80dc23d93d following "prospector -t pep8 -t pyflakes -t dodgy -t profile-validator -t pep257" 2016-03-01 21:11:43 +01:00
Martin Diehl e55d0ae3ca further attemps to make it conform with best python practice 2016-03-01 20:44:43 +01:00
Martin Diehl 6eb170bc07 still struggling with prospector 2016-03-01 19:37:31 +01:00
Martin Diehl 3b33d320b1 getting pyflakes to ignore 2016-03-01 19:06:00 +01:00
Martin Diehl 2a50c6bf86 using prospector --tool=dodgy --tool=pyflakes -M to find python flaws 2016-03-01 18:25:14 +01:00
Martin Diehl 7c9d344601 python files now report their version depending on VERSION file in $DAMASK_ROOT 2016-01-27 17:06:00 +00:00
Martin Diehl f693ead989 adding material.config to header 2015-12-28 16:36:26 +00:00
Martin Diehl c710709b1a example Makefile typically does not work, deleted 2015-12-15 14:34:03 +00:00
Martin Diehl 19ddbc9b21 fixed typo and simplified 2015-12-15 06:16:47 +00:00
Philip Eisenlohr 6de6b8b87f fixed wrong variable name when using pre-existing microstructures from table. 
added switch to skip effort for tolerance == 0.
 2015-12-09 14:13:19 +00:00
Martin Diehl d76fcb4be8 was giving wrong results 2015-12-05 21:34:39 +00:00
Martin Diehl 7eb7a4e8cd changed to use routine for symmetric matrices as ascii table cannot handle complex number anyway. further advantage: eigvals and eigvectors will be odered 2015-12-04 22:34:19 +00:00
Philip Eisenlohr 35202494c2 fixed issue caused by using -r twice as option label. 2015-12-04 04:33:23 +00:00
Philip Eisenlohr 784c78a3b0 removed defunct option to output labels as column vector. 2015-12-04 04:31:53 +00:00
Philip Eisenlohr 937634d703 added group shuffling (i.e. exchanging unique values) 2015-12-04 01:17:45 +00:00
Philip Eisenlohr 08014a7030 small polishing 2015-12-04 01:16:49 +00:00
Philip Eisenlohr 3fb1f02382 forgot $Id$ and line endings… 2015-12-03 22:33:38 +00:00
Philip Eisenlohr 2efc602854 Smooth geometry by selecting most frequent microstructure index within given stencil at each location. 2015-12-03 22:32:28 +00:00
Philip Eisenlohr 8f5c3b9ad7 small polishing. 2015-12-02 23:13:10 +00:00
Philip Eisenlohr 55b33e5597 added option “inplace” to directly modify VTK file instead of creating copy_added. 2015-12-02 23:10:14 +00:00
Martin Diehl f49091c952 addDeformedConfiguration without core module 2015-12-02 20:53:02 +00:00
Martin Diehl 6ecbd3ae56 makefile had problems with static flag, mentat spectral Box was still using table.croak 2015-12-02 20:02:19 +00:00
Martin Diehl 0ffcb7fdaf cleaning 2015-12-01 16:37:20 +00:00
Martin Diehl f61f87e6d0 updated reference results (visual impression much better now) for geom_fromTable and silenced verbose debug output per default since it's causing problems when piping to file 2015-11-30 16:22:59 +00:00
Philip Eisenlohr cee9a345b7 added option to label microstructure. 
updated to most recent asciitable/damask.util infrastructure.
 2015-11-20 16:30:55 +00:00
Philip Eisenlohr 0db4a7fad0 added debug messages. 
added background message for estimated time (+ grain info).
fixed functionality—finally works as intended (lump orientations within threshold).
 2015-11-20 16:27:57 +00:00
Martin Diehl 40c2a5dd6d differentiate name for undeformed and deformed coordinates makes sense. Still not happy with the naming though 2015-11-20 15:58:32 +00:00
Martin Diehl 24382ed827 unified options to enable automated parsing for documentation 2015-11-16 10:52:56 +00:00
Martin Diehl 1336c8d0e6 now using default 2D output for geometry 2015-11-16 09:54:39 +00:00