889a5807bb
more conservative (and probably appropriate) variance default for Laguerre tessellations: 1.0 —> 0.1
2015-08-08 20:12:26 +00:00
bbeb210708
functionality now provided by more general “geom_fromImage”
2015-08-07 22:16:40 +00:00
9729c03c00
removed obsolete code. added croak about number of cpus used.
2015-08-07 22:15:24 +00:00
a4772343b0
adopted new ASCIItable API. some polishing.
2015-08-07 22:08:54 +00:00
4ed56a8ba6
removed debugging print statements
2015-08-07 20:52:57 +00:00
d4e748b654
outsourced multiple repetitive functions into ASCIItable class.
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changed ASCIItable API from file-handles to filenames.
adopted these changes in pre and post processing scripts.
unified behavior and look.
fixed bugs here and there.
improved functionality.
2015-08-07 19:03:26 +00:00
de90a04374
assign indices from microstructure column if present for laguerre tessellation
2015-07-30 04:42:00 +00:00
599bb768ef
index microstructure from 1 instead of zero for laguerre tessellation
2015-07-28 22:15:32 +00:00
020a3e2634
superfluous since same can be (even more flexibly) accomplished with:
...
reLabel -l old -s old+tag
2015-07-26 00:41:42 +00:00
0db33f21b5
superfluous since same can be accomplished with:
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showTable -l -d (labels and data)
2015-07-26 00:39:32 +00:00
b69a422529
Generate the geometry description of a directional non-equiaxed grain structure, e.g., RVE cutted from a cold-rolling sheet. '--reduct' specifies the thickness reduction after rolling, and '-n' specified the number of samples cutted, e.g., n=5, then five samples will be cutted from the sheet along theta = 0 (the rolling direction), theta = 22.5, theta = 45, theta = 67.5, and theta = 90 (the transversal direction).
2015-07-24 14:12:10 +00:00
657ed7ed35
group voxels/pts by orientation and position, require spicy.
2015-07-24 13:30:33 +00:00
fc0e29c45b
removed erroneous rescaling of Laguerre weights.
2015-07-22 22:34:40 +00:00
b15f68905f
fig a bug.
2015-07-21 15:38:12 +00:00
331a4c5775
add the number of the re-constructed orientation into the name of output files.
2015-07-18 17:25:05 +00:00
e08b7bd02e
forgot to rescale transparency mask by pixelsizes.
2015-07-16 22:34:26 +00:00
3c9d6df889
fixed typo in last commit
2015-07-15 18:15:39 +00:00
6ebc490207
fixed broken functionality by adopting new ASCIItable class output for data_readArray().
2015-07-15 16:57:03 +00:00
d676fdc1ce
fixed default behavior of symmetry. used to advertise having cubic symmetry but was using [].
2015-07-10 16:58:30 +00:00
dce0501358
script to rename labels in an ASCIItable
2015-07-10 16:28:01 +00:00
f8658ffea1
added “gap” value to render pieces of resulting image transparent.
2015-07-07 14:53:55 +00:00
812d17f91c
streamlined column processing based on recently introduced asciitable functionality.
2015-07-01 15:48:34 +00:00
ef243d3e19
added references
2015-06-30 14:52:48 +00:00
61e3987bfa
extract the deformation anisotropic coefficients (r values) and strength anisotropic coefficients (normalized yield stress) automatically.
2015-06-29 15:57:31 +00:00
47249bb52a
added possibility to scale deformation fluctuation field.
2015-06-29 09:44:49 +00:00
fcdd80bba3
switched order of command line options to make consequence of “degrees” switch more clear, i.e., it affects both the tolerance and Euler angles…
2015-06-29 09:40:44 +00:00
129026662c
fixed small bugs.
...
modernized file treatment.
improved Laguerre speed by a factor of 2 due to precalculating the squared weights.
2015-06-27 08:41:08 +00:00
088299daf2
fix the bug in the calculation of RMSD, replace N with sqrt(N).
2015-06-25 12:41:26 +00:00
e310763c52
Novel script to generate geometry description and material configuration from position, phase, and orientation data in an ASCIItable.
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Can deal with phase-specific lattice symmetry, condenses orientations within a given angular threshold, and might be used in lieu of geom_fromANG when replacing the ANG header.
2015-06-21 11:56:05 +00:00
9b1f16e99e
report data range.
...
gracefully deal with constant field (below 1e-8 noise).
2015-06-19 11:36:21 +00:00
acad1246f3
fixed wrong variable name for quaternions as rotation options
2015-06-19 04:38:00 +00:00
94423cc7ac
added scriptID line “ removed during last commit”
2015-06-17 19:47:50 +00:00
012c830eff
removed writing of debugging statement to final output
2015-06-17 19:44:01 +00:00
e440305532
streamlined ASCIItable error checking.
2015-06-17 06:52:43 +00:00
5cc7b60a88
simplified processing of ASCIItables by utilizing the improved class methods.
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modernized file looping.
2015-06-16 17:21:24 +00:00
d57c7568dd
simplified processing of ASCIItables by utilizing the improved class methods.
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modernized file looping.
updated help.
2015-06-16 05:42:11 +00:00
c089ff9256
now with $ID$ and correct line endings…
2015-06-15 18:13:06 +00:00
6086baba52
Generate PNG image from scalar data on grid deformed by (periodic) deformation gradient.
2015-06-15 18:12:38 +00:00
a5b3e9d64c
typos fixed
2015-06-14 05:51:53 +00:00
37792f67df
automatically figure dimension of labels to tag.
2015-06-13 11:55:20 +00:00
c7f59c6482
change angle into radian.
2015-06-11 17:57:23 +00:00
bfe76794af
add the output of ".ang" file
2015-06-11 16:50:29 +00:00
c45a0ce55e
improved stability for geom_fromAng. no longer depends on correct header information.
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geom_fromVPSC with correct size determination now
2015-06-11 10:06:53 +00:00
e243632eb5
simplifications by adopting functionality provided by new asciitable class methods.
2015-06-08 05:07:14 +00:00
d99e34d870
typo caused problems with more than one tensor
2015-06-06 15:42:29 +00:00
129446e687
simplified script. deals now only with single format at a time. result is printed to STDOUT unless “basename” option specified.
2015-06-06 11:12:07 +00:00
b7f98c00d6
input file handling now save for large file count.
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streamlining of input column detection.
fixed bug iterating through “grainIDs” instead of “grain”.
proper closing and dismissal of output table file.
2015-06-05 11:50:15 +00:00
bb9e080790
input file handling now save for large file count.
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reshape input rotation matrix to (3,3).
2015-06-05 11:47:27 +00:00
5adbe74b10
changed library function name table.labels_index() to table.label_index()
2015-06-05 11:44:17 +00:00
f50927b99f
Create seeds file by poking at 45 degree through given geom file.
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Mimics APS Beamline 34-ID-E DAXM poking.
2015-06-05 11:41:44 +00:00
6eb83530b8
streamlining
2015-06-05 11:34:41 +00:00
2877066a6c
removed debug statement and simplified
2015-06-04 08:51:10 +00:00
bb677a26aa
added interface for predefined colormaps
2015-05-29 18:50:54 +00:00
92654dc2cd
fixed syntax bug, instantiating of Color object, and file closure.
2015-05-29 18:36:09 +00:00
54746c85d3
fixed bug for only blacklisting.
2015-05-28 22:31:32 +00:00
147cc91496
some polishing to laguerre tessellation
2015-05-28 20:57:03 +00:00
c327735c0d
order of whitelist is maintained in output (only if no blacklist is specified). allows to rearrange column order in tables.
2015-05-27 23:02:11 +00:00
c5349ab041
some polishing for option parser
2015-05-26 20:22:11 +00:00
73c6bd767f
added options for selective seed picking based on Mitchell’s best candidate algorithm for more uniformly distributed (spatially) seeds points
2015-05-26 20:13:35 +00:00
4107d5d1d2
Script to calculate Quaternion from input orientation matrix
2015-05-26 06:38:48 +00:00
5900fa4bf5
corrected defaults and simplified loops
2015-05-25 10:49:20 +00:00
1f160dfd72
FFT was at single precision only
2015-05-24 16:35:37 +00:00
e8fb49edc6
missing bracket
2015-05-22 06:17:35 +00:00
737e474cea
consistent handling of random number per file and always reporting as comment, fix for permuteData needed because of new asciitable behavior
2015-05-22 05:56:49 +00:00
fbfa55e910
adjusted to new table style and naming of output
2015-05-22 04:57:05 +00:00
f363d81de5
simplified column parsing
2015-05-21 21:54:47 +00:00
2349e6c79c
standard way of reporting
2015-05-21 16:04:19 +00:00
7af176d13f
introduced option to set microstructure starting index
2015-05-21 10:04:52 +00:00
14b921f6d5
corrected help text.
2015-05-21 00:13:50 +00:00
df5dd98576
simplified boolean dictionaries to “if else” constructs.
2015-05-21 00:13:11 +00:00
acc2cb656b
simplifications due to better functionality available through asciitable.py
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output filename format has slightly changed: binned-X-Y_weighted-W_
2015-05-21 00:08:32 +00:00
439d778cc0
simplified column check.
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fixed typos and improved help.
2015-05-20 23:21:35 +00:00
d70b903d1b
output follows standard way, test need to ignore header
2015-05-20 21:26:49 +00:00
056ba0f2e4
reverted back to hard-to-read but working if else statement
2015-05-20 19:40:11 +00:00
d99f13a49f
now operating on file, only on stdout if input comes from stdin
2015-05-20 19:07:52 +00:00
973f092fd9
similar to imageData but uses RGB triplet as color value instead of mapping a scalar.
...
Can only use columnar data and not 2D arrays, though.
2015-05-19 21:15:15 +00:00
ee65b269ad
simplified data column determination.
2015-05-19 21:14:19 +00:00
f7faa3eeca
finally fixed the bug in the transformation and incorporated rotation to conform to TSL convention
2015-05-18 22:28:24 +00:00
cd94469ea0
VPSC file format not used, if needed convert first to geom
2015-05-18 18:59:41 +00:00
76d456ee49
fixed rename
2015-05-18 14:48:25 +00:00
7775b254bd
updated tests to follow new addStrainTensors syntax, check in seeds_fromTable.py was wrong with simplified default
2015-05-18 08:42:14 +00:00
cddbd53789
reads better
2015-05-16 14:32:32 +00:00
03fef5fd6e
simplified option parsing
2015-05-15 13:49:16 +00:00
e45dcb7948
more readable if-else oneliner
2015-05-15 13:38:27 +00:00
6a38b4396f
simplified help
2015-05-15 13:34:52 +00:00
a3bed5cc42
short options conflicting with typical use
2015-05-15 10:33:32 +00:00
a451a69c2c
corrected default type (only list for 'extend')
2015-05-14 18:48:15 +00:00
fa1368204d
fixed bug in asciitable when updating labels for readArray, fixed checking for euler angels presence in tessellation, improved help
2015-05-14 17:07:50 +00:00
7ea350b90e
corrected default for multiple arguments of fixed length (tuple, not list)
2015-05-14 10:00:56 +00:00
3e8f16c515
range parameter is now autoscaled to account for -log option, i.e. range is always given as bounds of original data
2015-05-13 13:45:26 +00:00
b0a37497a1
fixed buggy coordinate transform.
2015-05-12 15:30:00 +00:00
6a98c7efad
simplified option parsing
2015-05-11 20:12:31 +00:00
4899b3df0a
found some unused (forgotten debug) statements
2015-05-11 20:09:49 +00:00
2102fadfc7
improved help for automatic documentation
2015-05-11 19:47:52 +00:00
537c42d146
script to transform coordinate system at APS beam line 34-ID-E from X,Y,Z,F to strain x,y,z
2015-05-11 14:15:50 +00:00
eff71b418b
now working with corrected asciitable
2015-05-10 20:59:23 +00:00
6f112b46b5
can be done with TSL OIM in current versions
2015-05-10 15:56:59 +00:00
b60f868a76
renumbering asciitable when readArray for selected columns only
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test no longer for deleteColumn
2015-05-10 11:29:11 +00:00
8bf7a7ef6a
some beautifications
2015-05-10 10:58:32 +00:00
c0a9141c8f
updated help to enable automated documentation
2015-05-10 10:56:02 +00:00
Philip Eisenlohr