44e5d25274
now aware of $DAMASK_BIN and guessing if environment missing
2011-11-09 17:51:00 +00:00
41b8232695
setup_shellrc now adds $DAMASK_ROOT/bin to the $PATH
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in setup/setup_processing.py uncomment 3 lines to remove the links from your ~/bin
2011-11-09 16:20:52 +00:00
06176873e4
after a somewhat lengthy discussion with Philip about usability and developability and general file-naming philosophy we think that we found a compromise on the "to-dot-py or not-to-dot-py" issue:
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symlinks in DAMASK_ROOT/bin do not carry the extension, but the source files do.
Hope that results in the maximum number of happy developers and users.
2011-11-09 15:37:45 +00:00
98513a4e0d
2011-11-07 18:27:33 +00:00
de96e99bca
corrected determination of restartRead from commandline (now done by FEsolving instead of DAMASK_spectral_interface)
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recompiled fftw libraries with --enable-shared to make them work with f2py
added draft for compilation test of spectral solver
2011-11-07 18:25:10 +00:00
ba63d3231f
fixed string include
2011-11-04 10:27:41 +00:00
9e3d7d7d6c
made $DAMASK_ROOT definition optional
2011-11-03 13:51:54 +00:00
b9647b2584
moved parts into new "lib" folder
2011-11-03 13:21:11 +00:00
aba7937845
now uses msc_tools method to figure out Mentat path
2011-11-03 13:16:00 +00:00
edb8c0cd1e
no part of "lib/pathinfo"
2011-11-03 13:00:39 +00:00
b5e6b754fb
starting "lib" subfolder for shared goodies.
2011-11-03 12:19:26 +00:00
db12869c16
shifted back to main folder. small polish.
2011-11-03 12:18:07 +00:00
b847db969a
changed "texture" to more correct "structure"
2011-11-03 12:07:41 +00:00
4e8f36a133
remove $ID$ from first line (I am wondering how this could work...)
2011-11-02 18:49:53 +00:00
680ba9082f
removed deadlock when calling IO_warning(33)
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polished IO_error and IO_warning
checked OpenMP critical statements in DAMASK_spectral.f90
corrected writing of headed in DAMASK_spectral.f90
2011-11-02 14:38:42 +00:00
447e69019c
Introduced environment variable DAMASK_ROOT.
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It is set in the DAMASK root folder by running damask_env.sh
Much needed in the testing routines so far (try ./testing/run_tests.py)
damask_env.sh could also trigger other scripts to get to a working setup after fresh checkout. For example it could run
./processing/setup/setup_processing.py
./code/setup/setup_code.py
if it finds that we have a fresh checkout.
2011-10-27 17:55:42 +00:00
7642509a47
first working draft of automated code testing, run_tests.py assumes DAMASK is located under ~/DAMASK/
2011-10-24 16:24:15 +00:00
e7a60988a1
modified exit number extraction
2011-10-24 13:02:08 +00:00
93b2160c2f
extract exit number from MSC out-file. Other MSC utility functions can also go into MSC_TOOLS class.
2011-10-24 12:59:46 +00:00
414bacb096
deleted unused vars. changed linking library info/path
2011-10-20 12:47:57 +00:00
ed08dfc2be
added option to select between cell-centered (as before) or vertex-centered data
2011-10-20 12:29:59 +00:00
c78227cec1
added option to skip data points along x,y,z in case they are periodic images. relevant for vertex-centered data for which outer surface data is doubled, i.e. data(0,0,0) == data(Nx,Ny,Nz)
2011-10-20 12:28:39 +00:00
3a0911ca89
added option to output RGB palette on terminal
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number of colors is now variable (default 32)
warning issued if MSC path not valid
new "redblue" sym colormap
2011-10-20 11:59:15 +00:00
96223ddf39
corrected for-loop index bug. two-dim output is now optional.
2011-10-14 23:43:45 +00:00
708b4d2eca
seed-file header format corrected, setup script now contains minimalSurface and vicinityOffset. removed .exe from compile output
2011-10-14 22:39:58 +00:00
ba0488638b
alter a spectral geom file such that any voxel that sees within a given vicinity a different microstructure than itself gets offset by a given value. this allows to identify/isolate grain boundary regions...
2011-10-11 17:35:53 +00:00
98c9bf9c15
generates spectral geom file for (currently) gyroid or diamond minimal surfaces. Inside and outside of a given threshold value are distinguished by microstructure 1 and 2.
2011-10-11 17:30:55 +00:00
ffc6442098
can now deal with arbitrarily long lines for microstructure definition. useful for 2D ASCII representation of grain morphology in the geom file.
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additional internal code reworking.
2011-10-11 17:25:22 +00:00
c7c541f393
corrected typos and such
2011-09-13 15:57:58 +00:00
d235de1aa5
added two small (quick and dirty) tools to convert data from EBSD to input files for spectral method, put them together with patchFromReconstructedBoundaries into new folder.
2011-09-13 15:46:44 +00:00
b412239d9f
reflects new output format of DAMASK_spectral to find
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*** Loadcase...
lines.
2011-09-05 13:39:44 +00:00
48ac3956ce
added '\n' escaping of ID string in VTK header
2011-09-05 13:38:10 +00:00
f458f026db
forgot to include string module, too
2011-09-05 08:54:29 +00:00
0ac5109c94
forgot to include string module
2011-09-05 08:50:36 +00:00
4eb8e25b6d
no fitting recent file renames
2011-08-26 12:25:11 +00:00
f3c2547fba
name change to better reflect what happens: comparison between local deformation field and a (necessarily compatbile) geometry reconstructed from the whole deformation field.
2011-08-26 07:17:35 +00:00
eb0ce3992b
debugging of addDebugInformation (now working, but not tested in detail)
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Added Id to postprocessingMath
2011-08-25 18:18:38 +00:00
7aba05ed9f
reworked to match former script layouts and logics. (not yet tested, use at your own risk)
2011-08-25 17:55:36 +00:00
282d2d7b97
corrected wrong Id tag
2011-08-25 16:47:12 +00:00
bbee6c4658
forget to check in addDebugInformation
2011-08-25 16:44:36 +00:00
a5f176cf18
put divergence calculation using FDM to postprocessingMath, added divergence calculation using differentation in Fourier space to postprocessingMath
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added functions to calculate the shape and volume mismatch of compatible and non-compatible geometry reconstruction to postprocessingMath. They can be accessed using addDebugInformation
2011-08-25 15:31:05 +00:00
cc3bc4a216
made handling of unknown dimension (i.e. resolution ==1) the same as for preprocessing (last commit)
2011-08-25 15:28:33 +00:00
272f7cc655
added auto scaling of dimension to voronoi_tessellation.f90. If dimension(i) == 0, it will get the smallest step of the remaining dimensions in that direction. Same is now done by patchFromReconstructedBoundaries
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setup_processing.py now gives executables the extension *.exe and removes the old executables before compiling
2011-08-25 12:16:06 +00:00
39b97f7b67
added new script "spectral_scaleGeom"
2011-08-19 13:32:27 +00:00
2dd8a353bb
now also works for single stepped loadcases, too
2011-08-19 10:03:42 +00:00
483234047c
renamed to be consistent with other file names
2011-08-19 07:53:35 +00:00
878ea443d6
added options to control written output (mesh(default), box, points) and to control reconstruction. --undeformed does not calculate average deformation of ve, --scaling controls the scaling of the fluctuation. Default is 1.0, with 0.0 no fluctuations are shown
2011-08-19 07:33:22 +00:00
589666d19e
added python script to simply (without antialising) scale a given *.geom file
2011-08-19 07:29:50 +00:00
def056f30f
added $Id$ escaping
2011-08-18 08:00:19 +00:00
10493ea8b0
added $Id$ login name escaping
2011-08-18 07:53:07 +00:00
164da22730
added some warnings if Mentat or PIL cabability missing
2011-08-18 07:52:07 +00:00
ff3bac2496
does not double size of 2D data for spectral method any more
2011-08-17 16:06:50 +00:00
3298e6821b
added forgotten "averageDown" script to list of shortcuts
2011-08-16 18:20:52 +00:00
bedce496a8
deleted unused option "dimension" since this is figured out by parsing the respective spectral or geom input files anyway.
2011-08-15 08:34:55 +00:00
e851c934ee
interrogate output from DAMASK_spectral for "error divergence:" evolution.
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results in an ASCII datafile containing the increment counter with corresponding divergence value. the evolution within an increment i is stretched between i and i+1 (and likely jumps then for the next increment i+1 at the value i+1)
2011-08-14 10:44:15 +00:00
a58158fc7c
bug fix related to hash key error when requesting --increments range
2011-07-25 12:53:54 +00:00
8cb8637d41
fixed running with default --range & using --separation options.
2011-07-22 11:59:03 +00:00
105a09f3df
only consider increments actually present in (spectral) result
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added switch to change from range of positions to range of increments
polished help output
2011-07-21 15:45:41 +00:00
cb96559d99
mappings should rather be called "sumabs" and "avgabs" than "abssum" and "absavg"
2011-07-15 11:27:47 +00:00
63451f6edf
added "absavg" (=average of the absolute values) to the predefined mappings
2011-07-15 08:07:33 +00:00
b252b467e8
moved useful ASCII post processing scripts from my Code repository into the DAMASK post-proc.
2011-06-21 16:25:48 +00:00
daa45306f2
fixed a nasty bug in reading the header of spectral files
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file type is guessed from extension
script tries to gracefully continue when data is missing but not crucial
ASCII file splitting now has correct increment (not position) in its name: poop_inc123.txt refers to true increment 123 not to position 123 in the result file anymore...
2011-06-21 12:38:58 +00:00
b6b02f6cf9
now reports over all loadcases present in the output file, not just a selected one...
2011-06-15 18:14:05 +00:00
dd11ef3072
added capability to deal with (Marc, spectral) output files that have less than every increment stored.
2011-06-15 17:49:59 +00:00
4d2f6782e7
removed "error" msg about missing /msc directory. if not present, now silently ignored (together with any requests for Mentat interaction).
2011-06-09 12:52:54 +00:00
d52fb1666e
"step" header is modified to "inc" to be consistent with postResults outputs.
2011-06-09 12:39:08 +00:00
a72a97f0ba
added nodalScalar capability.
...
--ns 'elements' reports the nodal connectivity (list of elements touching a node)
--prefix allows to prefix the output filename
2011-06-08 16:54:46 +00:00
f2c41aac83
do not use pwd library as it is unix only
...
due to the above path to subroutine is no longer set in mentat
spectral output uses different "grain numbers" for x-margin, y-margin, and margin edge
2011-06-08 15:06:37 +00:00
5740e13485
added new predefined mapping "abssum", which returns the sum of all absolute values
2011-06-08 14:07:15 +00:00
2cbfb69235
user defined mapping didn't work because of misspelled variable in "mapIncremental"
2011-06-08 13:56:21 +00:00
7aed307bfc
removed obsolet option --frame
...
renamed texture component frame to margin
2011-06-08 06:47:23 +00:00
8921f29dce
merged imaging, Mentat, and spectral versions of generating a patch of grains from a reconstructed boundary file into one script.
2011-06-07 19:15:34 +00:00
9370d9a049
added 'spectral_geomCheck' to symlink table
2011-06-06 15:29:14 +00:00
9f5c9142e5
generate ParaView mesh from spectral geometry (*.geom) description file to check for correct grain assignment
2011-06-01 08:44:14 +00:00
4a2078e965
produces two-column data of step | iteration at which convergence was reached (or aborted). Source file is the redirected STDOUT of DAMASK_spectral
2011-05-31 12:31:35 +00:00
ac3a2ee4e1
alll grain have the same phase now
...
corrected small bug when Image library is not available
2011-05-28 09:48:39 +00:00
5e6de13962
removed useless grain selection option (--grain)
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escaped MPIE\n.... in $ID$
fixed problem when writing output files into subdirectories
2011-05-26 09:44:10 +00:00
96a4d83b9b
fixed bug in user mapping function.
...
corrected examples and added incremental mapping explanation to usage hint.
2011-05-26 09:41:53 +00:00
3ae8b0f732
dropped grain index from output header (did not work anyhow)
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introduced string escape for the likes of MPIE\n.jia to prevent newline literal
2011-05-24 17:23:22 +00:00
73b1dbc5f7
corrected printing bug
2011-05-23 15:11:01 +00:00
6daa8b710b
shortened output header to contain only one description line that includes the command line switches passed to postResults
2011-05-23 07:13:28 +00:00
2a8dc1bff1
Fixed a bug introduced in the last revision. Datatype keywords (SCALARS, VECTORS, ...) were not written in plural form into VTK file, thus had not been recognized by ParaView.
2011-05-22 14:01:18 +00:00
8879e03a60
better reporting and fixed a bug when requesting non-existing data
2011-05-21 21:43:40 +00:00
25e3c4baf8
nicer STDOUTput and can now properly deal with resolutions of 1
2011-05-13 16:53:27 +00:00
4658190951
now reports command line switches used in generating output files
2011-05-12 09:53:44 +00:00
25bf6bf7dd
reports command line switches used in generating output files
2011-05-12 08:25:34 +00:00
0a5e151699
extension to make content clear
2011-05-11 17:10:12 +00:00
1928fa816c
output now contains both node and ip number
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relation between node and ip numbering is given in new function ipIDs
2011-05-06 10:00:27 +00:00
56b2b3e572
* quick fix in order to make it work for elements of type 57 (quadratic with reduced integration)
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* length for results of type "elemental tensor" is exactly 7
2011-05-05 09:16:29 +00:00
2fa4a344b9
added sloppy option to circumvent increment range check. that is useful to reach the last inc in former FFT sim results, which have a wrong inc count in their header
2011-05-02 16:10:18 +00:00
97185fb30b
removed debug printing...
2011-04-14 14:03:06 +00:00
f598e3b6ed
corrected mixup of Fortran (1,2,3,...) indexing to Python (0,1,2,...) style.
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fixed erroneous array indexing in neighborhood calculation.
2011-04-14 10:11:23 +00:00
2a04bfdbba
fixed error concerning mixed-up index starts (0 vs 1)
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"illegal" mapping functions are not checked anymore, i.e., if you want to average Euler angles you get it..!
sorting is now "natural", i.e., separating or sorting for "x,y,z" returns x varying fast and z slow. "--sort" overrides "--separate" in terms of output sorting (as expected...)
2011-04-13 16:31:44 +00:00
482be626e0
major recoding.
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now with tiny memory footprint and better guessing of remaining time.
2011-04-12 17:46:35 +00:00
e4cbdc5743
now also works for 2D quadratic triangular element type 125
2011-04-06 13:11:25 +00:00
a989aa979e
corrected increment offsetting for spectral file type. should now be consistent with new (0+N) mpie_spectral output scheme
2011-04-06 10:00:19 +00:00
fffff202b0
2D mesh option now also alters corresponding job option
2011-04-04 15:47:09 +00:00
73accf79b6
added option for 2D mesh (3D extrusion step is skipped)
2011-04-04 12:12:01 +00:00
a546f8dbd2
changed wording of input queries to (hopefully) clearer statements
2011-03-30 15:48:18 +00:00
8467c91dab
moved setup scripts back to subdirs where they are needed
2011-03-22 15:42:53 +00:00
Philip Eisenlohr