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DAMASK_EICMD/python/damask/_crystal.py

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Typehints for crystal
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from typing import Union, Dict, List, Tuple
separating functionality
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import numpy as np
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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from ._typehints import FloatSequence, CrystalFamily, CrystalLattice, CrystalKinematics
separating functionality
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from . import util
simplified/separated
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from . import Rotation
separating functionality
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added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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lattice_symmetries: Dict[CrystalLattice, CrystalFamily] = {
separating functionality
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'aP': 'triclinic',
'mP': 'monoclinic',
'mS': 'monoclinic',
'oP': 'orthorhombic',
'oS': 'orthorhombic',
'oI': 'orthorhombic',
'oF': 'orthorhombic',
'tP': 'tetragonal',
'tI': 'tetragonal',
'hP': 'hexagonal',
'cP': 'cubic',
'cI': 'cubic',
'cF': 'cubic',
}
support the user
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orientation_relationships: Dict[str, Dict[CrystalLattice,np.ndarray]] = {
'KS': {
'cF': np.array([
[[-1, 0, 1],[ 1, 1, 1]],
[[-1, 0, 1],[ 1, 1, 1]],
[[ 0, 1,-1],[ 1, 1, 1]],
[[ 0, 1,-1],[ 1, 1, 1]],
[[ 1,-1, 0],[ 1, 1, 1]],
[[ 1,-1, 0],[ 1, 1, 1]],
[[ 1, 0,-1],[ 1,-1, 1]],
[[ 1, 0,-1],[ 1,-1, 1]],
[[-1,-1, 0],[ 1,-1, 1]],
[[-1,-1, 0],[ 1,-1, 1]],
[[ 0, 1, 1],[ 1,-1, 1]],
[[ 0, 1, 1],[ 1,-1, 1]],
[[ 0,-1, 1],[-1, 1, 1]],
[[ 0,-1, 1],[-1, 1, 1]],
[[-1, 0,-1],[-1, 1, 1]],
[[-1, 0,-1],[-1, 1, 1]],
[[ 1, 1, 0],[-1, 1, 1]],
[[ 1, 1, 0],[-1, 1, 1]],
[[-1, 1, 0],[ 1, 1,-1]],
[[-1, 1, 0],[ 1, 1,-1]],
[[ 0,-1,-1],[ 1, 1,-1]],
[[ 0,-1,-1],[ 1, 1,-1]],
[[ 1, 0, 1],[ 1, 1,-1]],
[[ 1, 0, 1],[ 1, 1,-1]],
],dtype=float),
'cI': np.array([
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
[[-1,-1, 1],[ 0, 1, 1]],
[[-1, 1,-1],[ 0, 1, 1]],
],dtype=float),
},
'GT': {
'cF': np.array([
[[ -5,-12, 17],[ 1, 1, 1]],
[[ 17, -5,-12],[ 1, 1, 1]],
[[-12, 17, -5],[ 1, 1, 1]],
[[ 5, 12, 17],[ -1, -1, 1]],
[[-17, 5,-12],[ -1, -1, 1]],
[[ 12,-17, -5],[ -1, -1, 1]],
[[ -5, 12,-17],[ -1, 1, 1]],
[[ 17, 5, 12],[ -1, 1, 1]],
[[-12,-17, 5],[ -1, 1, 1]],
[[ 5,-12,-17],[ 1, -1, 1]],
[[-17, -5, 12],[ 1, -1, 1]],
[[ 12, 17, 5],[ 1, -1, 1]],
[[ -5, 17,-12],[ 1, 1, 1]],
[[-12, -5, 17],[ 1, 1, 1]],
[[ 17,-12, -5],[ 1, 1, 1]],
[[ 5,-17,-12],[ -1, -1, 1]],
[[ 12, 5, 17],[ -1, -1, 1]],
[[-17, 12, -5],[ -1, -1, 1]],
[[ -5,-17, 12],[ -1, 1, 1]],
[[-12, 5,-17],[ -1, 1, 1]],
[[ 17, 12, 5],[ -1, 1, 1]],
[[ 5, 17, 12],[ 1, -1, 1]],
[[ 12, -5,-17],[ 1, -1, 1]],
[[-17,-12, 5],[ 1, -1, 1]],
],dtype=float),
'cI': np.array([
[[-17, -7, 17],[ 1, 0, 1]],
[[ 17,-17, -7],[ 1, 1, 0]],
[[ -7, 17,-17],[ 0, 1, 1]],
[[ 17, 7, 17],[ -1, 0, 1]],
[[-17, 17, -7],[ -1, -1, 0]],
[[ 7,-17,-17],[ 0, -1, 1]],
[[-17, 7,-17],[ -1, 0, 1]],
[[ 17, 17, 7],[ -1, 1, 0]],
[[ -7,-17, 17],[ 0, 1, 1]],
[[ 17, -7,-17],[ 1, 0, 1]],
[[-17,-17, 7],[ 1, -1, 0]],
[[ 7, 17, 17],[ 0, -1, 1]],
[[-17, 17, -7],[ 1, 1, 0]],
[[ -7,-17, 17],[ 0, 1, 1]],
[[ 17, -7,-17],[ 1, 0, 1]],
[[ 17,-17, -7],[ -1, -1, 0]],
[[ 7, 17, 17],[ 0, -1, 1]],
[[-17, 7,-17],[ -1, 0, 1]],
[[-17,-17, 7],[ -1, 1, 0]],
[[ -7, 17,-17],[ 0, 1, 1]],
[[ 17, 7, 17],[ -1, 0, 1]],
[[ 17, 17, 7],[ 1, -1, 0]],
[[ 7,-17,-17],[ 0, -1, 1]],
[[-17, -7, 17],[ 1, 0, 1]],
],dtype=float),
},
'GT_prime': {
'cF' : np.array([
[[ 0, 1, -1],[ 7, 17, 17]],
[[ -1, 0, 1],[ 17, 7, 17]],
[[ 1, -1, 0],[ 17, 17, 7]],
[[ 0, -1, -1],[ -7,-17, 17]],
[[ 1, 0, 1],[-17, -7, 17]],
[[ 1, -1, 0],[-17,-17, 7]],
[[ 0, 1, -1],[ 7,-17,-17]],
[[ 1, 0, 1],[ 17, -7,-17]],
[[ -1, -1, 0],[ 17,-17, -7]],
[[ 0, -1, -1],[ -7, 17,-17]],
[[ -1, 0, 1],[-17, 7,-17]],
[[ -1, -1, 0],[-17, 17, -7]],
[[ 0, -1, 1],[ 7, 17, 17]],
[[ 1, 0, -1],[ 17, 7, 17]],
[[ -1, 1, 0],[ 17, 17, 7]],
[[ 0, 1, 1],[ -7,-17, 17]],
[[ -1, 0, -1],[-17, -7, 17]],
[[ -1, 1, 0],[-17,-17, 7]],
[[ 0, -1, 1],[ 7,-17,-17]],
[[ -1, 0, -1],[ 17, -7,-17]],
[[ 1, 1, 0],[ 17,-17, -7]],
[[ 0, 1, 1],[ -7, 17,-17]],
[[ 1, 0, -1],[-17, 7,-17]],
[[ 1, 1, 0],[-17, 17, -7]],
],dtype=float),
'cI' : np.array([
[[ 1, 1, -1],[ 12, 5, 17]],
[[ -1, 1, 1],[ 17, 12, 5]],
[[ 1, -1, 1],[ 5, 17, 12]],
[[ -1, -1, -1],[-12, -5, 17]],
[[ 1, -1, 1],[-17,-12, 5]],
[[ 1, -1, -1],[ -5,-17, 12]],
[[ -1, 1, -1],[ 12, -5,-17]],
[[ 1, 1, 1],[ 17,-12, -5]],
[[ -1, -1, 1],[ 5,-17,-12]],
[[ 1, -1, -1],[-12, 5,-17]],
[[ -1, -1, 1],[-17, 12, -5]],
[[ -1, -1, -1],[ -5, 17,-12]],
[[ 1, -1, 1],[ 12, 17, 5]],
[[ 1, 1, -1],[ 5, 12, 17]],
[[ -1, 1, 1],[ 17, 5, 12]],
[[ -1, 1, 1],[-12,-17, 5]],
[[ -1, -1, -1],[ -5,-12, 17]],
[[ -1, 1, -1],[-17, -5, 12]],
[[ -1, -1, 1],[ 12,-17, -5]],
[[ -1, 1, -1],[ 5,-12,-17]],
[[ 1, 1, 1],[ 17, -5,-12]],
[[ 1, 1, 1],[-12, 17, -5]],
[[ 1, -1, -1],[ -5, 12,-17]],
[[ 1, 1, -1],[-17, 5,-12]],
],dtype=float),
},
'NW': {
'cF' : np.array([
[[ 2, -1, -1],[ 1, 1, 1]],
[[ -1, 2, -1],[ 1, 1, 1]],
[[ -1, -1, 2],[ 1, 1, 1]],
[[ -2, -1, -1],[ -1, 1, 1]],
[[ 1, 2, -1],[ -1, 1, 1]],
[[ 1, -1, 2],[ -1, 1, 1]],
[[ 2, 1, -1],[ 1, -1, 1]],
[[ -1, -2, -1],[ 1, -1, 1]],
[[ -1, 1, 2],[ 1, -1, 1]],
[[ 2, -1, 1],[ -1, -1, 1]],
[[ -1, 2, 1],[ -1, -1, 1]],
[[ -1, -1, -2],[ -1, -1, 1]],
],dtype=float),
'cI' : np.array([
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
[[ 0, -1, 1],[ 0, 1, 1]],
],dtype=float),
},
'Pitsch': {
'cF' : np.array([
[[ 1, 0, 1],[ 0, 1, 0]],
[[ 1, 1, 0],[ 0, 0, 1]],
[[ 0, 1, 1],[ 1, 0, 0]],
[[ 0, 1, -1],[ 1, 0, 0]],
[[ -1, 0, 1],[ 0, 1, 0]],
[[ 1, -1, 0],[ 0, 0, 1]],
[[ 1, 0, -1],[ 0, 1, 0]],
[[ -1, 1, 0],[ 0, 0, 1]],
[[ 0, -1, 1],[ 1, 0, 0]],
[[ 0, 1, 1],[ 1, 0, 0]],
[[ 1, 0, 1],[ 0, 1, 0]],
[[ 1, 1, 0],[ 0, 0, 1]],
],dtype=float),
'cI' : np.array([
[[ 1, -1, 1],[ -1, 0, 1]],
[[ 1, 1, -1],[ 1, -1, 0]],
[[ -1, 1, 1],[ 0, 1, -1]],
[[ -1, 1, -1],[ 0, -1, -1]],
[[ -1, -1, 1],[ -1, 0, -1]],
[[ 1, -1, -1],[ -1, -1, 0]],
[[ 1, -1, -1],[ -1, 0, -1]],
[[ -1, 1, -1],[ -1, -1, 0]],
[[ -1, -1, 1],[ 0, -1, -1]],
[[ -1, 1, 1],[ 0, -1, 1]],
[[ 1, -1, 1],[ 1, 0, -1]],
[[ 1, 1, -1],[ -1, 1, 0]],
],dtype=float),
},
'Bain': {
'cF' : np.array([
[[ 0, 1, 0],[ 1, 0, 0]],
[[ 0, 0, 1],[ 0, 1, 0]],
[[ 1, 0, 0],[ 0, 0, 1]],
],dtype=float),
'cI' : np.array([
[[ 0, 1, 1],[ 1, 0, 0]],
[[ 1, 0, 1],[ 0, 1, 0]],
[[ 1, 1, 0],[ 0, 0, 1]],
],dtype=float),
},
'Burgers' : {
'cI' : np.array([
[[ -1, 1, 1],[ 1, 1, 0]],
[[ -1, 1, -1],[ 1, 1, 0]],
[[ 1, 1, 1],[ 1, -1, 0]],
[[ 1, 1, -1],[ 1, -1, 0]],
[[ 1, 1, -1],[ 1, 0, 1]],
[[ -1, 1, 1],[ 1, 0, 1]],
[[ 1, 1, 1],[ -1, 0, 1]],
[[ 1, -1, 1],[ -1, 0, 1]],
[[ -1, 1, -1],[ 0, 1, 1]],
[[ 1, 1, -1],[ 0, 1, 1]],
[[ -1, 1, 1],[ 0, -1, 1]],
[[ 1, 1, 1],[ 0, -1, 1]],
],dtype=float),
'hP' : np.array([
[[ -1, 2, -1, 0],[ 0, 0, 0, 1]],
[[ -1, -1, 2, 0],[ 0, 0, 0, 1]],
[[ -1, 2, -1, 0],[ 0, 0, 0, 1]],
[[ -1, -1, 2, 0],[ 0, 0, 0, 1]],
[[ -1, 2, -1, 0],[ 0, 0, 0, 1]],
[[ -1, -1, 2, 0],[ 0, 0, 0, 1]],
[[ -1, 2, -1, 0],[ 0, 0, 0, 1]],
[[ -1, -1, 2, 0],[ 0, 0, 0, 1]],
[[ -1, 2, -1, 0],[ 0, 0, 0, 1]],
[[ -1, -1, 2, 0],[ 0, 0, 0, 1]],
[[ -1, 2, -1, 0],[ 0, 0, 0, 1]],
[[ -1, -1, 2, 0],[ 0, 0, 0, 1]],
],dtype=float),
},
}
separating functionality
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no need to split code over two files
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class Crystal():
some guidance for users
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"""
clarify real/reciprocal space coordinates
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Representation of a crystal as (general) crystal family or (more specific) as a scaled Bravais lattice.
some guidance for users
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Examples
--------
Cubic crystal family:
>>> import damask
>>> cubic = damask.Crystal(family='cubic')
>>> cubic
Crystal family: cubic
clarify real/reciprocal space coordinates
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Body-centered cubic Bravais lattice with parameters of iron:
some guidance for users
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>>> import damask
clarify real/reciprocal space coordinates
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>>> Fe = damask.Crystal(lattice='cI', a=287e-12)
some guidance for users
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>>> Fe
Crystal family: cubic
Bravais lattice: cI
clarify real/reciprocal space coordinates
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a=2.87e-10 m, b=2.87e-10 m, c=2.87e-10 m
some guidance for users
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α=90°, β=90°, γ=90°
"""
separating functionality
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polishing classes should return 'MyType' for inheritance without hassle
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def __init__(self, *,
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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family: CrystalFamily = None,
lattice: CrystalLattice = None,
small changes in logic for type hints
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a: float = None, b: float = None, c: float = None,
alpha: float = None, beta: float = None, gamma: float = None,
degrees: bool = False):
separating functionality
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"""
some guidance for users
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New representation of a crystal.
separating functionality
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Parameters
----------
unified help
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family : {'triclinic', 'monoclinic', 'orthorhombic', 'tetragonal', 'hexagonal', 'cubic'}, optional.
no need to split code over two files
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Name of the crystal family.
added crystal repr(); fixed typos; extended help
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Will be inferred if 'lattice' is given.
unified help
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lattice : {'aP', 'mP', 'mS', 'oP', 'oS', 'oI', 'oF', 'tP', 'tI', 'hP', 'cP', 'cI', 'cF'}, optional.
Name of the Bravais lattice in Pearson notation.
separating functionality
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a : float, optional
Length of lattice parameter 'a'.
b : float, optional
Length of lattice parameter 'b'.
c : float, optional
Length of lattice parameter 'c'.
alpha : float, optional
Angle between b and c lattice basis.
beta : float, optional
Angle between c and a lattice basis.
gamma : float, optional
Angle between a and b lattice basis.
degrees : bool, optional
Angles are given in degrees. Defaults to False.
"""
small changes in logic for type hints
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if family is not None and family not in list(lattice_symmetries.values()):
no need to split code over two files
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raise KeyError(f'invalid crystal family "{family}"')
unified help
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if lattice is not None and family is not None and family != lattice_symmetries[lattice]:
raise KeyError(f'incompatible family "{family}" for lattice "{lattice}"')
separating functionality
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no need to split code over two files
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self.family = lattice_symmetries[lattice] if family is None else family
re-introduced multiple inheritance
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self.lattice = lattice
separating functionality
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re-introduced multiple inheritance
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if self.lattice is not None:
self.a = 1 if a is None else a
self.b = b
self.c = c
self.a = float(self.a) if self.a is not None else \
(self.b / self.ratio['b'] if self.b is not None and self.ratio['b'] is not None else
self.c / self.ratio['c'] if self.c is not None and self.ratio['c'] is not None else None)
self.b = float(self.b) if self.b is not None else \
(self.a * self.ratio['b'] if self.a is not None and self.ratio['b'] is not None else
self.c / self.ratio['c'] * self.ratio['b']
if self.c is not None and self.ratio['b'] is not None and self.ratio['c'] is not None else None)
self.c = float(self.c) if self.c is not None else \
(self.a * self.ratio['c'] if self.a is not None and self.ratio['c'] is not None else
self.b / self.ratio['b'] * self.ratio['c']
if self.c is not None and self.ratio['b'] is not None and self.ratio['c'] is not None else None)
self.alpha = np.radians(alpha) if degrees and alpha is not None else alpha
self.beta = np.radians(beta) if degrees and beta is not None else beta
self.gamma = np.radians(gamma) if degrees and gamma is not None else gamma
if self.alpha is None and 'alpha' in self.immutable: self.alpha = self.immutable['alpha']
if self.beta is None and 'beta' in self.immutable: self.beta = self.immutable['beta']
if self.gamma is None and 'gamma' in self.immutable: self.gamma = self.immutable['gamma']
if \
(self.a is None) \
or (self.b is None or ('b' in self.immutable and self.b != self.immutable['b'] * self.a)) \
or (self.c is None or ('c' in self.immutable and self.c != self.immutable['c'] * self.b)) \
or (self.alpha is None or ('alpha' in self.immutable and self.alpha != self.immutable['alpha'])) \
Philip's corrections
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or (self.beta is None or ('beta' in self.immutable and self.beta != self.immutable['beta'])) \
re-introduced multiple inheritance
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or (self.gamma is None or ('gamma' in self.immutable and self.gamma != self.immutable['gamma'])):
added lattice point property; fixed edge case for angle sum
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raise ValueError (f'incompatible parameters {self.parameters} for crystal family {self.family}')
re-introduced multiple inheritance
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if np.any(np.array([self.alpha,self.beta,self.gamma]) <= 0):
added lattice point property; fixed edge case for angle sum
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raise ValueError ('lattice angles must be positive')
re-introduced multiple inheritance
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if np.any([np.roll([self.alpha,self.beta,self.gamma],r)[0]
added lattice point property; fixed edge case for angle sum
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>= np.sum(np.roll([self.alpha,self.beta,self.gamma],r)[1:]) for r in range(3)]):
raise ValueError ('each lattice angle must be less than sum of others')
separating functionality
2021-06-02 12:58:27 +05:30
added crystal repr(); fixed typos; extended help
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def __repr__(self):
it's useful for users to see standard docstrings in magic methods
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"""
Return repr(self).
Give short human-readable summary.
"""
nicer reporting
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family = f'Crystal family: {self.family}'
return family if self.lattice is None else \
clarify real/reciprocal space coordinates
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util.srepr([family,
f'Bravais lattice: {self.lattice}',
'a={:.5g} m, b={:.5g} m, c={:.5g} m'.format(*self.parameters[:3]),
'α={:.5g}°, β={:.5g}°, γ={:.5g}°'.format(*np.degrees(self.parameters[3:]))])
nicer reporting
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added crystal repr(); fixed typos; extended help
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adjusting style + documentation
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def __eq__(self,
other: object) -> bool:
equality checks note: doing this type of comparison means: - LatticeFamily('cubic') == Lattice('cF') - Lattice('cF') != LatticeFamily('cubic') we have the same behavior for comparison between Orientation and Rotation
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"""
it's useful for users to see standard docstrings in magic methods
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Return self==other.
Adding consistency to docstring structure
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Test equality of other.
equality checks note: doing this type of comparison means: - LatticeFamily('cubic') == Lattice('cF') - Lattice('cF') != LatticeFamily('cubic') we have the same behavior for comparison between Orientation and Rotation
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Parameters
----------
added crystal repr(); fixed typos; extended help
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other : Crystal
Crystal to check for equality.
equality checks note: doing this type of comparison means: - LatticeFamily('cubic') == Lattice('cF') - Lattice('cF') != LatticeFamily('cubic') we have the same behavior for comparison between Orientation and Rotation
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"""
polishing of help and style; relax to FloatSequence type where appropriate but keep doc at np.ndarray
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return NotImplemented if not isinstance(other, Crystal) else \
self.lattice == other.lattice and \
no need to split code over two files
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self.parameters == other.parameters and \
self.family == other.family
equality checks note: doing this type of comparison means: - LatticeFamily('cubic') == Lattice('cF') - Lattice('cF') != LatticeFamily('cubic') we have the same behavior for comparison between Orientation and Rotation
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separating functionality
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@property
def parameters(self):
"""Return lattice parameters a, b, c, alpha, beta, gamma."""
small changes in logic for type hints
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if hasattr(self,'a'): return (self.a,self.b,self.c,self.alpha,self.beta,self.gamma)
separating functionality
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no need to split code over two files
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@property
def immutable(self):
"""Return immutable lattice parameters."""
don't test implementation details
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_immutable = {
'cubic': {
'b': 1.0,
'c': 1.0,
'alpha': np.pi/2.,
'beta': np.pi/2.,
'gamma': np.pi/2.,
},
'hexagonal': {
'b': 1.0,
'alpha': np.pi/2.,
'beta': np.pi/2.,
'gamma': 2.*np.pi/3.,
},
'tetragonal': {
'b': 1.0,
'alpha': np.pi/2.,
'beta': np.pi/2.,
'gamma': np.pi/2.,
},
'orthorhombic': {
'alpha': np.pi/2.,
'beta': np.pi/2.,
'gamma': np.pi/2.,
},
'monoclinic': {
'alpha': np.pi/2.,
'gamma': np.pi/2.,
},
'triclinic': {}
}
return _immutable[self.family]
no need to split code over two files
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support the user
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@property
def orientation_relationships(self):
"""Return labels of orientation relationships."""
shorter code
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return [k for k,v in orientation_relationships.items() if self.lattice in v]
support the user
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no need to split code over two files
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@property
Typehints for crystal
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def standard_triangle(self) -> Union[Dict[str, np.ndarray], None]:
no need to split code over two files
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"""
Corners of the standard triangle.
keep data close to where it is used
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Notes
-----
no need to split code over two files
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Not yet defined for monoclinic.
References
----------
Bases are computed from
>>> basis = {
keep data close to where it is used
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... 'cubic' : np.linalg.inv(np.array([[0.,0.,1.], # direction of red
... [1.,0.,1.]/np.sqrt(2.), # green
... [1.,1.,1.]/np.sqrt(3.)]).T), # blue
... 'hexagonal' : np.linalg.inv(np.array([[0.,0.,1.], # direction of red
... [1.,0.,0.], # green
... [np.sqrt(3.),1.,0.]/np.sqrt(4.)]).T), # blue
... 'tetragonal' : np.linalg.inv(np.array([[0.,0.,1.], # direction of red
... [1.,0.,0.], # green
... [1.,1.,0.]/np.sqrt(2.)]).T), # blue
... 'orthorhombic': np.linalg.inv(np.array([[0.,0.,1.], # direction of red
... [1.,0.,0.], # green
... [0.,1.,0.]]).T), # blue
no need to split code over two files
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... }
"""
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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_basis: Dict[CrystalFamily, Dict[str, np.ndarray]] = {
no need to split code over two files
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'cubic': {'improper':np.array([ [-1. , 0. , 1. ],
[ np.sqrt(2.) , -np.sqrt(2.) , 0. ],
[ 0. , np.sqrt(3.) , 0. ] ]),
'proper':np.array([ [ 0. , -1. , 1. ],
[-np.sqrt(2.) , np.sqrt(2.) , 0. ],
[ np.sqrt(3.) , 0. , 0. ] ]),
},
'hexagonal':
{'improper':np.array([ [ 0. , 0. , 1. ],
[ 1. , -np.sqrt(3.) , 0. ],
[ 0. , 2. , 0. ] ]),
'proper':np.array([ [ 0. , 0. , 1. ],
[-1. , np.sqrt(3.) , 0. ],
[ np.sqrt(3.) , -1. , 0. ] ]),
},
'tetragonal':
{'improper':np.array([ [ 0. , 0. , 1. ],
[ 1. , -1. , 0. ],
[ 0. , np.sqrt(2.) , 0. ] ]),
'proper':np.array([ [ 0. , 0. , 1. ],
[-1. , 1. , 0. ],
[ np.sqrt(2.) , 0. , 0. ] ]),
},
'orthorhombic':
{'improper':np.array([ [ 0., 0., 1.],
[ 1., 0., 0.],
[ 0., 1., 0.] ]),
'proper':np.array([ [ 0., 0., 1.],
[-1., 0., 0.],
[ 0., 1., 0.] ]),
}}
Typehints for crystal
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return _basis.get(self.family, None)
no need to split code over two files
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moved symmetry_operations from Orientation to Crystal
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@property
def symmetry_operations(self) -> Rotation:
"""Symmetry operations as Rotations."""
_symmetry_operations: Dict[CrystalFamily, List] = {
'cubic': [
[ 1.0, 0.0, 0.0, 0.0 ],
[ 0.0, 1.0, 0.0, 0.0 ],
[ 0.0, 0.0, 1.0, 0.0 ],
[ 0.0, 0.0, 0.0, 1.0 ],
[ 0.0, 0.0, 0.5*np.sqrt(2), 0.5*np.sqrt(2) ],
[ 0.0, 0.0, 0.5*np.sqrt(2),-0.5*np.sqrt(2) ],
[ 0.0, 0.5*np.sqrt(2), 0.0, 0.5*np.sqrt(2) ],
[ 0.0, 0.5*np.sqrt(2), 0.0, -0.5*np.sqrt(2) ],
[ 0.0, 0.5*np.sqrt(2),-0.5*np.sqrt(2), 0.0 ],
[ 0.0, -0.5*np.sqrt(2),-0.5*np.sqrt(2), 0.0 ],
[ 0.5, 0.5, 0.5, 0.5 ],
[-0.5, 0.5, 0.5, 0.5 ],
[-0.5, 0.5, 0.5, -0.5 ],
[-0.5, 0.5, -0.5, 0.5 ],
[-0.5, -0.5, 0.5, 0.5 ],
[-0.5, -0.5, 0.5, -0.5 ],
[-0.5, -0.5, -0.5, 0.5 ],
[-0.5, 0.5, -0.5, -0.5 ],
[-0.5*np.sqrt(2), 0.0, 0.0, 0.5*np.sqrt(2) ],
[ 0.5*np.sqrt(2), 0.0, 0.0, 0.5*np.sqrt(2) ],
[-0.5*np.sqrt(2), 0.0, 0.5*np.sqrt(2), 0.0 ],
[-0.5*np.sqrt(2), 0.0, -0.5*np.sqrt(2), 0.0 ],
[-0.5*np.sqrt(2), 0.5*np.sqrt(2), 0.0, 0.0 ],
[-0.5*np.sqrt(2),-0.5*np.sqrt(2), 0.0, 0.0 ],
],
'hexagonal': [
[ 1.0, 0.0, 0.0, 0.0 ],
[-0.5*np.sqrt(3), 0.0, 0.0, -0.5 ],
[ 0.5, 0.0, 0.0, 0.5*np.sqrt(3) ],
[ 0.0, 0.0, 0.0, 1.0 ],
[-0.5, 0.0, 0.0, 0.5*np.sqrt(3) ],
[-0.5*np.sqrt(3), 0.0, 0.0, 0.5 ],
[ 0.0, 1.0, 0.0, 0.0 ],
[ 0.0, -0.5*np.sqrt(3), 0.5, 0.0 ],
[ 0.0, 0.5, -0.5*np.sqrt(3), 0.0 ],
[ 0.0, 0.0, 1.0, 0.0 ],
[ 0.0, -0.5, -0.5*np.sqrt(3), 0.0 ],
[ 0.0, 0.5*np.sqrt(3), 0.5, 0.0 ],
],
'tetragonal': [
[ 1.0, 0.0, 0.0, 0.0 ],
[ 0.0, 1.0, 0.0, 0.0 ],
[ 0.0, 0.0, 1.0, 0.0 ],
[ 0.0, 0.0, 0.0, 1.0 ],
[ 0.0, 0.5*np.sqrt(2), 0.5*np.sqrt(2), 0.0 ],
[ 0.0, -0.5*np.sqrt(2), 0.5*np.sqrt(2), 0.0 ],
[ 0.5*np.sqrt(2), 0.0, 0.0, 0.5*np.sqrt(2) ],
[-0.5*np.sqrt(2), 0.0, 0.0, 0.5*np.sqrt(2) ],
],
'orthorhombic': [
[ 1.0,0.0,0.0,0.0 ],
[ 0.0,1.0,0.0,0.0 ],
[ 0.0,0.0,1.0,0.0 ],
[ 0.0,0.0,0.0,1.0 ],
],
'monoclinic': [
[ 1.0,0.0,0.0,0.0 ],
[ 0.0,0.0,1.0,0.0 ],
],
'triclinic': [
[ 1.0,0.0,0.0,0.0 ],
]}
return Rotation.from_quaternion(_symmetry_operations[self.family],accept_homomorph=True)
separating functionality
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@property
def ratio(self):
"""Return axes ratios of own lattice."""
_ratio = { 'hexagonal': {'c': np.sqrt(8./3.)}}
return dict(b = self.immutable['b']
if 'b' in self.immutable else
_ratio[self.family]['b'] if self.family in _ratio and 'b' in _ratio[self.family] else None,
c = self.immutable['c']
if 'c' in self.immutable else
_ratio[self.family]['c'] if self.family in _ratio and 'c' in _ratio[self.family] else None,
)
@property
Typehints for crystal
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def basis_real(self) -> np.ndarray:
separating functionality
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"""
Philip's corrections
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Return orthogonal real space crystal basis.
separating functionality
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References
----------
C.T. Young and J.L. Lytton, Journal of Applied Physics 43:1408–1417, 1972
https://doi.org/10.1063/1.1661333
"""
small changes in logic for type hints
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if self.parameters is None:
separating functionality
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raise KeyError('missing crystal lattice parameters')
return np.array([
[1,0,0],
[np.cos(self.gamma),np.sin(self.gamma),0],
[np.cos(self.beta),
(np.cos(self.alpha)-np.cos(self.beta)*np.cos(self.gamma)) /np.sin(self.gamma),
np.sqrt(1 - np.cos(self.alpha)**2 - np.cos(self.beta)**2 - np.cos(self.gamma)**2
+ 2 * np.cos(self.alpha) * np.cos(self.beta) * np.cos(self.gamma))/np.sin(self.gamma)],
],dtype=float).T \
* np.array([self.a,self.b,self.c])
@property
Typehints for crystal
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def basis_reciprocal(self) -> np.ndarray:
Philip's corrections
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"""Return reciprocal (dual) crystal basis."""
separating functionality
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return np.linalg.inv(self.basis_real.T)
added lattice point property; fixed edge case for angle sum
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@property
def lattice_points(self):
"""Return lattice points."""
_lattice_points = {
'P': [
],
'S': [
[0.5,0.5,0],
],
'I': [
[0.5,0.5,0.5],
],
'F': [
[0.0,0.5,0.5],
[0.5,0.0,0.5],
[0.5,0.5,0.0],
],
'hP': [
[2./3.,1./3.,0.5],
],
}
if self.lattice is None: raise KeyError('no lattice type specified')
simplified lattice point data; added test
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return np.array([[0,0,0]]
+ _lattice_points.get(self.lattice if self.lattice == 'hP' else \
self.lattice[-1],None),dtype=float)
added lattice point property; fixed edge case for angle sum
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[skip ci] adjusted function argument alignment with asterisk
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def to_lattice(self, *,
polishing of help and style; relax to FloatSequence type where appropriate but keep doc at np.ndarray
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direction: FloatSequence = None,
plane: FloatSequence = None) -> np.ndarray:
separating functionality
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"""
Calculate lattice vector corresponding to crystal frame direction or plane normal.
Parameters
----------
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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direction|plane : numpy.ndarray, shape (...,3)
clarify real/reciprocal space coordinates
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Real space vector along direction or
reciprocal space vector along plane normal.
separating functionality
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Returns
-------
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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Miller : numpy.ndarray, shape (...,3)
Philip's corrections
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Lattice vector of direction or plane.
separating functionality
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Use util.scale_to_coprime to convert to (integer) Miller indices.
"""
if (direction is not None) ^ (plane is None):
added lattice point property; fixed edge case for angle sum
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raise KeyError('specify either "direction" or "plane"')
better readable
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basis,axis = (self.basis_reciprocal,np.array(direction)) \
if plane is None else \
(self.basis_real,np.array(plane))
return np.einsum('li,...l',basis,axis)
separating functionality
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[skip ci] adjusted function argument alignment with asterisk
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def to_frame(self, *,
adjustments to follow de-facto standard in other parts of the python library
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uvw: FloatSequence = None,
hkl: FloatSequence = None) -> np.ndarray:
separating functionality
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"""
clarify real/reciprocal space coordinates
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Calculate crystal frame vector corresponding to lattice direction [uvw] or plane normal (hkl).
separating functionality
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Parameters
----------
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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uvw|hkl : numpy.ndarray, shape (...,3)
separating functionality
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Miller indices of crystallographic direction or plane normal.
Returns
-------
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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vector : numpy.ndarray, shape (...,3)
clarify real/reciprocal space coordinates
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Crystal frame vector in real space along [uvw] direction or
in reciprocal space along (hkl) plane normal.
separating functionality
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some guidance for users
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Examples
--------
clarify real/reciprocal space coordinates
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Crystal frame vector (real space) of Magnesium corresponding to [1,1,0] direction:
some guidance for users
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>>> import damask
clarify real/reciprocal space coordinates
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>>> Mg = damask.Crystal(lattice='hP', a=321e-12, c=521e-12)
>>> Mg.to_frame(uvw=[1, 1, 0])
array([1.60500000e-10, 2.77994155e-10, 0.00000000e+00])
some guidance for users
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clarify real/reciprocal space coordinates
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Crystal frame vector (reciprocal space) of Titanium along (1,0,0) plane normal:
some guidance for users
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>>> import damask
>>> Ti = damask.Crystal(lattice='hP', a=0.295e-9, c=0.469e-9)
>>> Ti.to_frame(hkl=(1, 0, 0))
array([ 3.38983051e+09, 1.95711956e+09, -4.15134508e-07])
separating functionality
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"""
if (uvw is not None) ^ (hkl is None):
added lattice point property; fixed edge case for angle sum
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raise KeyError('specify either "uvw" or "hkl"')
better readable
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basis,axis = (self.basis_real,np.array(uvw)) \
if hkl is None else \
(self.basis_reciprocal,np.array(hkl))
separating functionality
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return np.einsum('il,...l',basis,axis)
[skip ci] changed function definition to multiline layout for crystal, seeds and tensor module
2022-01-27 15:15:14 +05:30
def kinematics(self,
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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mode: CrystalKinematics) -> Dict[str, List[np.ndarray]]:
documenting
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"""
added crystal repr(); fixed typos; extended help
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Return crystal kinematics systems.
documenting
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Parameters
----------
mode : {'slip','twin'}
Deformation mode.
Returns
-------
direction_plane : dictionary
added crystal repr(); fixed typos; extended help
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Directions and planes of deformation mode families.
documenting
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"""
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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_kinematics: Dict[CrystalLattice, Dict[CrystalKinematics, List[np.ndarray]]] = {
keep data close to where it is used
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'cF': {
slip systems for tI (bct) simple test. Not the best, but allows easy comparison with - grep NTWINSYSTEM\ = src/lattice.f90 - grep NSLIPSYSTEM\ = src/lattice.f90
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'slip': [np.array([
structured according to family
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[+0,+1,-1, +1,+1,+1],
[-1,+0,+1, +1,+1,+1],
[+1,-1,+0, +1,+1,+1],
[+0,-1,-1, -1,-1,+1],
[+1,+0,+1, -1,-1,+1],
[-1,+1,+0, -1,-1,+1],
[+0,-1,+1, +1,-1,-1],
[-1,+0,-1, +1,-1,-1],
[+1,+1,+0, +1,-1,-1],
[+0,+1,+1, -1,+1,-1],
[+1,+0,-1, -1,+1,-1],
[-1,-1,+0, -1,+1,-1]]),
np.array([
[+1,+1,+0, +1,-1,+0],
[+1,-1,+0, +1,+1,+0],
[+1,+0,+1, +1,+0,-1],
[+1,+0,-1, +1,+0,+1],
[+0,+1,+1, +0,+1,-1],
[+0,+1,-1, +0,+1,+1]])],
slip systems for tI (bct) simple test. Not the best, but allows easy comparison with - grep NTWINSYSTEM\ = src/lattice.f90 - grep NSLIPSYSTEM\ = src/lattice.f90
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'twin': [np.array([
structured according to family
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[-2, 1, 1, 1, 1, 1],
[ 1,-2, 1, 1, 1, 1],
[ 1, 1,-2, 1, 1, 1],
[ 2,-1, 1, -1,-1, 1],
[-1, 2, 1, -1,-1, 1],
[-1,-1,-2, -1,-1, 1],
[-2,-1,-1, 1,-1,-1],
[ 1, 2,-1, 1,-1,-1],
[ 1,-1, 2, 1,-1,-1],
[ 2, 1,-1, -1, 1,-1],
[-1,-2,-1, -1, 1,-1],
[-1, 1, 2, -1, 1,-1]])]
keep data close to where it is used
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},
'cI': {
slip systems for tI (bct) simple test. Not the best, but allows easy comparison with - grep NTWINSYSTEM\ = src/lattice.f90 - grep NSLIPSYSTEM\ = src/lattice.f90
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'slip': [np.array([
structured according to family
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[+1,-1,+1, +0,+1,+1],
[-1,-1,+1, +0,+1,+1],
[+1,+1,+1, +0,-1,+1],
[-1,+1,+1, +0,-1,+1],
[-1,+1,+1, +1,+0,+1],
[-1,-1,+1, +1,+0,+1],
[+1,+1,+1, -1,+0,+1],
[+1,-1,+1, -1,+0,+1],
[-1,+1,+1, +1,+1,+0],
[-1,+1,-1, +1,+1,+0],
[+1,+1,+1, -1,+1,+0],
[+1,+1,-1, -1,+1,+0]]),
np.array([
[-1,+1,+1, +2,+1,+1],
[+1,+1,+1, -2,+1,+1],
[+1,+1,-1, +2,-1,+1],
[+1,-1,+1, +2,+1,-1],
[+1,-1,+1, +1,+2,+1],
[+1,+1,-1, -1,+2,+1],
[+1,+1,+1, +1,-2,+1],
[-1,+1,+1, +1,+2,-1],
[+1,+1,-1, +1,+1,+2],
[+1,-1,+1, -1,+1,+2],
[-1,+1,+1, +1,-1,+2],
[+1,+1,+1, +1,+1,-2]]),
np.array([
[+1,+1,-1, +1,+2,+3],
[+1,-1,+1, -1,+2,+3],
[-1,+1,+1, +1,-2,+3],
[+1,+1,+1, +1,+2,-3],
[+1,-1,+1, +1,+3,+2],
[+1,+1,-1, -1,+3,+2],
[+1,+1,+1, +1,-3,+2],
[-1,+1,+1, +1,+3,-2],
[+1,+1,-1, +2,+1,+3],
[+1,-1,+1, -2,+1,+3],
[-1,+1,+1, +2,-1,+3],
[+1,+1,+1, +2,+1,-3],
[+1,-1,+1, +2,+3,+1],
[+1,+1,-1, -2,+3,+1],
[+1,+1,+1, +2,-3,+1],
[-1,+1,+1, +2,+3,-1],
[-1,+1,+1, +3,+1,+2],
[+1,+1,+1, -3,+1,+2],
[+1,+1,-1, +3,-1,+2],
[+1,-1,+1, +3,+1,-2],
[-1,+1,+1, +3,+2,+1],
[+1,+1,+1, -3,+2,+1],
[+1,+1,-1, +3,-2,+1],
[+1,-1,+1, +3,+2,-1]])],
slip systems for tI (bct) simple test. Not the best, but allows easy comparison with - grep NTWINSYSTEM\ = src/lattice.f90 - grep NSLIPSYSTEM\ = src/lattice.f90
2022-01-05 12:38:10 +05:30
'twin': [np.array([
structured according to family
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[-1, 1, 1, 2, 1, 1],
[ 1, 1, 1, -2, 1, 1],
[ 1, 1,-1, 2,-1, 1],
[ 1,-1, 1, 2, 1,-1],
[ 1,-1, 1, 1, 2, 1],
[ 1, 1,-1, -1, 2, 1],
[ 1, 1, 1, 1,-2, 1],
[-1, 1, 1, 1, 2,-1],
[ 1, 1,-1, 1, 1, 2],
[ 1,-1, 1, -1, 1, 2],
[-1, 1, 1, 1,-1, 2],
[ 1, 1, 1, 1, 1,-2]])]
keep data close to where it is used
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},
'hP': {
slip systems for tI (bct) simple test. Not the best, but allows easy comparison with - grep NTWINSYSTEM\ = src/lattice.f90 - grep NSLIPSYSTEM\ = src/lattice.f90
2022-01-05 12:38:10 +05:30
'slip': [np.array([
structured according to family
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[+2,-1,-1,+0, +0,+0,+0,+1],
[-1,+2,-1,+0, +0,+0,+0,+1],
[-1,-1,+2,+0, +0,+0,+0,+1]]),
np.array([
[+2,-1,-1,+0, +0,+1,-1,+0],
[-1,+2,-1,+0, -1,+0,+1,+0],
[-1,-1,+2,+0, +1,-1,+0,+0]]),
np.array([
[-1,+2,-1,+0, +1,+0,-1,+1],
[-2,+1,+1,+0, +0,+1,-1,+1],
[-1,-1,+2,+0, -1,+1,+0,+1],
[+1,-2,+1,+0, -1,+0,+1,+1],
[+2,-1,-1,+0, +0,-1,+1,+1],
[+1,+1,-2,+0, +1,-1,+0,+1]]),
np.array([
[-2,+1,+1,+3, +1,+0,-1,+1],
[-1,-1,+2,+3, +1,+0,-1,+1],
[-1,-1,+2,+3, +0,+1,-1,+1],
[+1,-2,+1,+3, +0,+1,-1,+1],
[+1,-2,+1,+3, -1,+1,+0,+1],
[+2,-1,-1,+3, -1,+1,+0,+1],
[+2,-1,-1,+3, -1,+0,+1,+1],
[+1,+1,-2,+3, -1,+0,+1,+1],
[+1,+1,-2,+3, +0,-1,+1,+1],
[-1,+2,-1,+3, +0,-1,+1,+1],
[-1,+2,-1,+3, +1,-1,+0,+1],
[-2,+1,+1,+3, +1,-1,+0,+1]]),
np.array([
[-1,-1,+2,+3, +1,+1,-2,+2],
[+1,-2,+1,+3, -1,+2,-1,+2],
[+2,-1,-1,+3, -2,+1,+1,+2],
[+1,+1,-2,+3, -1,-1,+2,+2],
[-1,+2,-1,+3, +1,-2,+1,+2],
[-2,+1,+1,+3, +2,-1,-1,+2]])],
slip systems for tI (bct) simple test. Not the best, but allows easy comparison with - grep NTWINSYSTEM\ = src/lattice.f90 - grep NSLIPSYSTEM\ = src/lattice.f90
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'twin': [np.array([
structured according to family
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[-1, 0, 1, 1, 1, 0,-1, 2], # shear = (3-(c/a)^2)/(sqrt(3) c/a) <-10.1>{10.2}
[ 0,-1, 1, 1, 0, 1,-1, 2],
[ 1,-1, 0, 1, -1, 1, 0, 2],
[ 1, 0,-1, 1, -1, 0, 1, 2],
[ 0, 1,-1, 1, 0,-1, 1, 2],
[-1, 1, 0, 1, 1,-1, 0, 2]]),
np.array([
[-1,-1, 2, 6, 1, 1,-2, 1], # shear = 1/(c/a) <11.6>{-1-1.1}
[ 1,-2, 1, 6, -1, 2,-1, 1],
[ 2,-1,-1, 6, -2, 1, 1, 1],
[ 1, 1,-2, 6, -1,-1, 2, 1],
[-1, 2,-1, 6, 1,-2, 1, 1],
[-2, 1, 1, 6, 2,-1,-1, 1]]),
np.array([
[ 1, 0,-1,-2, 1, 0,-1, 1], # shear = (4(c/a)^2-9)/(4 sqrt(3) c/a) <10.-2>{10.1}
[ 0, 1,-1,-2, 0, 1,-1, 1],
[-1, 1, 0,-2, -1, 1, 0, 1],
[-1, 0, 1,-2, -1, 0, 1, 1],
[ 0,-1, 1,-2, 0,-1, 1, 1],
[ 1,-1, 0,-2, 1,-1, 0, 1]]),
np.array([
[ 1, 1,-2,-3, 1, 1,-2, 2], # shear = 2((c/a)^2-2)/(3 c/a) <11.-3>{11.2}
[-1, 2,-1,-3, -1, 2,-1, 2],
[-2, 1, 1,-3, -2, 1, 1, 2],
[-1,-1, 2,-3, -1,-1, 2, 2],
[ 1,-2, 1,-3, 1,-2, 1, 2],
[ 2,-1,-1,-3, 2,-1,-1, 2]])]
slip systems for tI (bct) simple test. Not the best, but allows easy comparison with - grep NTWINSYSTEM\ = src/lattice.f90 - grep NSLIPSYSTEM\ = src/lattice.f90
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},
'tI': {
'slip': [np.array([
[+0,+0,+1, +1,+0,+0],
[+0,+0,+1, +0,+1,+0]]),
np.array([
[+0,+0,+1, +1,+1,+0],
[+0,+0,+1, -1,+1,+0]]),
np.array([
[+0,+1,+0, +1,+0,+0],
[+1,+0,+0, +0,+1,+0]]),
np.array([
[+1,-1,+1, +1,+1,+0],
[+1,-1,-1, +1,+1,+0],
[-1,-1,-1, -1,+1,+0],
[-1,-1,+1, -1,+1,+0]]),
np.array([
[+1,-1,+0, +1,+1,+0],
[+1,+1,+0, +1,-1,+0]]),
np.array([
[+0,+1,+1, +1,+0,+0],
[+0,-1,+1, +1,+0,+0],
[-1,+0,+1, +0,+1,+0],
[+1,+0,+1, +0,+1,+0]]),
np.array([
[+0,+1,+0, +0,+0,+1],
[+1,+0,+0, +0,+0,+1]]),
np.array([
[+1,+1,+0, +0,+0,+1],
[-1,+1,+0, +0,+0,+1]]),
np.array([
[+0,+1,-1, +0,+1,+1],
[+0,-1,-1, +0,-1,+1],
[-1,+0,-1, -1,+0,+1],
[+1,+0,-1, +1,+0,+1]]),
np.array([
[+1,-1,+1, +0,+1,+1],
[+1,+1,-1, +0,+1,+1],
[+1,+1,+1, +0,+1,-1],
[-1,+1,+1, +0,+1,-1],
[+1,-1,-1, +1,+0,+1],
[-1,-1,+1, +1,+0,+1],
[+1,+1,+1, +1,+0,-1],
[+1,-1,+1, +1,+0,-1]]),
np.array([
[+1,+0,+0, +0,+1,+1],
[+1,+0,+0, +0,+1,-1],
[+0,+1,+0, +1,+0,+1],
[+0,+1,+0, +1,+0,-1]]),
np.array([
[+0,+1,-1, +2,+1,+1],
[+0,-1,-1, +2,-1,+1],
[+1,+0,-1, +1,+2,+1],
[-1,+0,-1, -1,+2,+1],
[+0,+1,-1, -2,+1,+1],
[+0,-1,-1, -2,-1,+1],
[-1,+0,-1, -1,-2,+1],
[+1,+0,-1, +1,-2,+1]]),
np.array([
[-1,+1,+1, +2,+1,+1],
[-1,-1,+1, +2,-1,+1],
[+1,-1,+1, +1,+2,+1],
[-1,-1,+1, -1,+2,+1],
[+1,+1,+1, -2,+1,+1],
[+1,-1,+1, -2,-1,+1],
[-1,+1,+1, -1,-2,+1],
[+1,+1,+1, +1,-2,+1]])]
}
keep data close to where it is used
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}
master = _kinematics[self.lattice][mode]
shorter code
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return {'direction':[util.Bravais_to_Miller(uvtw=m[:,0:4]) if self.lattice == 'hP'
else m[:,0:3] for m in master],
'plane': [util.Bravais_to_Miller(hkil=m[:,4:8]) if self.lattice == 'hP'
else m[:,3:6] for m in master]}
separating functionality
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[skip ci] changed function definition to multiline layout for crystal, seeds and tensor module
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def relation_operations(self,
added CrystalFamily, CrystalLattice, CrystalKinematics typehints
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model: str) -> Tuple[CrystalLattice, Rotation]:
simplified/separated
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"""
Crystallographic orientation relationships for phase transformations.
Parameters
----------
model : str
Name of orientation relationship.
Returns
-------
operations : (string, damask.Rotation)
added crystal repr(); fixed typos; extended help
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Resulting lattice and rotations characterizing the orientation relationship.
simplified/separated
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References
----------
S. Morito et al., Journal of Alloys and Compounds 577:s587-s592, 2013
https://doi.org/10.1016/j.jallcom.2012.02.004
K. Kitahara et al., Acta Materialia 54(5):1279-1288, 2006
https://doi.org/10.1016/j.actamat.2005.11.001
Y. He et al., Journal of Applied Crystallography 39:72-81, 2006
https://doi.org/10.1107/S0021889805038276
H. Kitahara et al., Materials Characterization 54(4-5):378-386, 2005
https://doi.org/10.1016/j.matchar.2004.12.015
Y. He et al., Acta Materialia 53(4):1179-1190, 2005
https://doi.org/10.1016/j.actamat.2004.11.021
"""
support the user
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my_relationships = {k:v for k,v in orientation_relationships.items() if self.lattice in v}
if model not in my_relationships:
simplified/separated
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raise KeyError(f'unknown orientation relationship "{model}"')
support the user
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r = my_relationships[model]
simplified/separated
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sl = self.lattice
ol = (set(r)-{sl}).pop()
m = r[sl]
o = r[ol]
p_,_p = np.zeros(m.shape[:-1]+(3,)),np.zeros(o.shape[:-1]+(3,))
p_[...,0,:] = m[...,0,:] if m.shape[-1] == 3 else util.Bravais_to_Miller(uvtw=m[...,0,0:4])
p_[...,1,:] = m[...,1,:] if m.shape[-1] == 3 else util.Bravais_to_Miller(hkil=m[...,1,0:4])
_p[...,0,:] = o[...,0,:] if o.shape[-1] == 3 else util.Bravais_to_Miller(uvtw=o[...,0,0:4])
_p[...,1,:] = o[...,1,:] if o.shape[-1] == 3 else util.Bravais_to_Miller(hkil=o[...,1,0:4])
return (ol,Rotation.from_parallel(p_,_p))